BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479421

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19030.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   676    0.0  


> AT3G19030.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: pyridoxine biosynthetic 
process, homoserine biosynthetic process; LOCATED IN: endomembrane 
system; EXPRESSED IN: 19 plant structures; EXPRESSED 
DURING: 9 growth stages; BEST Arabidopsis thaliana protein 
match is: unknown protein (TAIR:AT1G49500.1); Has 22 Blast hits 
to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:6563979-6564424 REVERSE 
LENGTH=446
Length=446

 Score =  676 bits (366),  Expect = 0.0
 Identities = 426/454 (94%), Gaps = 8/454 (2%)
 Strand=Plus/Plus

Query  1    GACTCACAAAGACAAGAGTTCTCTAGACGCGgaaaacatagagaaaacaaaaaaccctca  60
            |||||||||||||||||||||||||||||||||||||||||| || | |||||| ||| |
Sbjct  1    GACTCACAAAGACAAGAGTTCTCTAGACGCGGAAAACATAGA-AAGA-AAAAAA-CCTAA  57

Query  61   aaagcgcaaaacacgaaacaagaagaaaagtaaaacaTTTTTAGTTCTCTCCTACGAATT  120
            |||||||||||||||||||||||||||||| ||||||  |||   ||| |||||||||||
Sbjct  58   AAAGCGCAAAACACGAAACAAGAAGAAAAGAAAAACA--TTT--CTCT-TCCTACGAATT  112

Query  121  AAGTACGTACAACATGGTGTCTCAAAAGCTAGAGATTTGCATCGAATTGGTGAAAATAGC  180
            ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  113  AAGCACAAACAACATGGTGTCTCAAAAGCTAGAGATTTGCATCGAATTGGTGAAAATTGC  172

Query  181  TGTTGTTTTCGTCGCCACCGTTGCTGAATCAATAGAAGAAGCTTTCCGTAAGCCTCCACC  240
            ||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct  173  TGTTGTTTTCGTCACCACCGTGGCTGAATCAGTAGAAGAAGCTTTCCGTAAGCCTCCACC  232

Query  241  GTCGCTTCCAACAGTTCACGGTGGTCGCCGGAATAATTACGCCGCCGTTCCCATTCCTCT  300
            ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  GTCTCTTCCAGCAGTTCACGGTGGTCGCCGGAATAATTACGCCGCCGTTCCCATTCCTCT  292

Query  301  TGTTGGATTCATGTGATGAGCtttttagttttttttttttttttGGTTTTGGCCTCGTTA  360
            ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct  293  TGTTGGATTCATGTGATGAGCTTCTTAGTTTTTTATTTTTTTTTGGTTTTGGCCTCATTA  352

Query  361  AAGTTAGTAGTTCTCGTGCCTTGTGGCGTTTTGGATGTTGTTGATTTGTGTATAAAGTAT  420
            ||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  353  AAGTTAGTAGTTCCCGTGCCTTGTGGCGTTTTGGATATTGTTTATTTGTGTATAAAGTAT  412

Query  421  AACCAAAAGATAATGAAGAGTTTACAGATGAATC  454
            |||||||| |||||||||||||||||||||||||
Sbjct  413  AACCAAAACATAATGAAGAGTTTACAGATGAATC  446



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5