BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479428
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 4... 2606 0.0
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 4... 968 0.0
> AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein
47B | chr3:6611198-6614044 REVERSE LENGTH=1729
Length=1729
Score = 2606 bits (1411), Expect = 0.0
Identities = 1623/1723 (94%), Gaps = 24/1723 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctctccgcctccttttaagaccaactctctctctaatccatctctctct 60
||||||||||||||||||||||||||||||||||| ||||||||| | || ||| |||||
Sbjct 9 TCTCTCTCTCTCTCTCCGCCTCCTTTTAAGACCAAATCTCTCTCT-A-CC-TCTATCTCT 65
Query 61 ctctcCGCCATTTCCAGAGCTCAACGAGCTCTCACTTTCTTTACG--CACTTCTTGGAAC 118
|||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 66 CTCTCCGCCATTACCAGAGCTCAACGAGCTCTCACTTTCTTTACGCACACTTGTTGGAAC 125
Query 119 GAAAGATATTCAGAGAGAAGAAGAGGAATCTTGAAGTTCTTGAATCTAATACAACTCGGT 178
|||| ||||||| ||||||| | | |||||| ||| |||||||||||| |||||||||
Sbjct 126 GAAATATATTCATAGAGAAG-A-A-GAATCTCGAAACTCTTGAATCTAAAACAACTCGGA 182
Query 179 GACTCTG-TTTCCCATTTCCGGAGATCAGATCGGATCAAGATGCAGACAACCAACGGCTC 237
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GACTCTGTTTTCCC-TTTCCGGAGATCAGATCGGATCAAGATGCAGACAACCAACGGCTC 241
Query 238 AGATTCAACGTTGGCAACTTCCGGAGCCACGCCGCCGAATCAACAAACCCCTCCTCCACC 297
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 242 AGATTCGACGTTGGCAACTTCCGGAGCCACACCGCCGAATCAACAAACCCCTCCTCCACC 301
Query 298 TCACCAGTGGCAGCAACAACCACCGCAGCAGCAGCAACAGTGGATGGCTGCGGCCATGCA 357
||| ||||||||||| | | || ||||| |||||||||||||||||| ||||||||
Sbjct 302 TCAGCAGTGGCAGCAGC-AGCA--ACAGCAACAGCAACAGTGGATGGCT---GCCATGCA 355
Query 358 ATAT---CCAGCGGCGGCGATGATGATGATGCAGCAGCAACAGATGATGATGTATCCTCA 414
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 356 ATATCCACCAGCGGCGGCGATGATGATGATGCAGCAGCAACAGATGCTGATGTATCCTCA 415
Query 415 CCAATACGTTCCGTATAATCAAGGTCCTTATCAGCATCATCATCCTCAGCTTCACCAATA 474
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 TCAATATGTTCCGTATAATCAAGGTCCTTATCAGCAGCATCATCCTCAGCTTCACCAATA 475
Query 475 CGGGTCTTATCAACAGCACCAG---CAGCAACACAAGCCTCTTGACCGTGGATCTGGAGA 531
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 476 CGGGTCTTATCAACAGCACCAGCACCAGCAACACAAGGCTATTGACCGTGGATCTGGAGA 535
Query 532 TGATGTCAAGACTCTCTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCA 591
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TGATGTCAAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCA 595
Query 592 CTCTTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCAC 651
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 TTCTTGCTTTTCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCAC 655
Query 652 TTCTCAATCAGAAGGGTATGGGTTTATTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGT 711
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 656 TTCTCAATCAGAAGGGTATGGGTTTGTTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGT 715
Query 712 TCTTCAGAACTATAGTGGTTCGGTGATGCCAAACTCAGACCAGCCCTTCCGTATAAACTG 771
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 716 TCTTCAGAACTATAGTGGTTCAGTGATGCCAAACTCGGACCAACCCTTCCGTATAAACTG 775
Query 772 GGCATCTTTTAGTACTGGTGAAAAAAGAGCAGTGGAAAATGGTCCAGATCTATCCATATT 831
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 776 GGCATCTTTTAGTACTGGTGAAAAAAGAGCAGTGGAAAATGGTCCAGACCTATCTGTTTT 835
Query 832 TGTTGGAGATTTGTCTCCAGATGTCACTGATGCTTTATTGCATGAGACCTTTTTTGATAG 891
||| ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 836 TGTGGGAGACTTGTCTCCAGATGTCACTGACGTTTTATTGCATGAGACCTTTTCTGATAG 895
Query 892 ATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACTGGCCGGTCCAAAGG 951
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 896 ATATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACCGGCCGGTCCAAAGG 955
Query 952 TTACGGTTTTGTGAGGTTTGGTGATGAAAATGAGAGATCAAGGGCTTTGACAGAAATGAA 1011
||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 956 TTATGGTTTTGTGAGGTTCGGTGATGAAAATGAGAGGTCAAGGGCTTTGACAGAAATGAA 1015
Query 1012 TGGAGCTTACTGTTCGAACAGGCAAATGCGTGTAGGTGTTGCAACTCCCAAAAGAGCGAT 1071
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1016 TGGAGCTTACTGTTCGAACAGGCAAATGCGTGTAGGTATTGCAACTCCCAAAAGAGCGAT 1075
Query 1072 TGCTAATCAGCAGCAACATTCTTCACAAGCTCTGATACTGGCTGGTGGACATGGAGCAAA 1131
|||||||||||| |||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1076 TGCTAATCAGCAACAACATTCTTCACAAGCTGTGATTCTGGCTGGTGGACATGGATCAAA 1135
Query 1132 TGGTTCCATGGCTCATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTTGT 1191
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TGGTTCCATGGGTTATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATTTGT 1195
Query 1192 TGGCGGCATTGACGCTGATGTTACTGACGAAGACCTCAGACAACCTTTTTCCCAGTTTGG 1251
||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1196 TGGCGGCATTGACCCTGATGTTATTGATGAAGACCTCAGACAACCTTTTTCCCAGTTTGG 1255
Query 1252 CGAGGTTGTTTCAGTGAAGATACCAGTAGGCAAAGGATGTGGATTTGTCCAATTTGCTGA 1311
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1256 AGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGATTTGTCCAATTTGCTGA 1315
Query 1312 CAGGAAGAGTGCTGAAGATGCTATCGAGACTTTGAATGGGACAGTCATCGGCAAGAACAC 1371
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1316 CAGGAAGAGTGCTGAAGATGCTATCGAGAGTTTGAACGGGACAGTCATCGGCAAGAACAC 1375
Query 1372 TGTCAGACTCTCTTGGGGACGAAGCCCGAACAAACAGTGGAGAGGAGACTCAGGACAGCA 1431
|||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1376 TGTCAGACTCTCCTGGGGACGAAGCCCAAACAAGCAGTGGAGAGGAGACTCAGGGCAGCA 1435
Query 1432 GTGGAATGGAGGATACTCACGAGGACAAGGTTACAACAGTGGAGGAGGATATGCTAACCA 1491
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1436 GTGGAATGGAGGATACTCACGAGGACATGGTTACAACAATGGAGGAGGATATGCTAACCA 1495
Query 1492 CCACGACTCCAACAACTATCATGGGGAAAATTGAAGAGACTCATCAAGTGATCATCATCA 1551
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1496 CCACGACTCCAACAACTATCATGGGGAGAATTGAAGAGACTCATCAAGTGATCATCTTCA 1555
Query 1552 TCATGGTTTCACACATCAAAGCTAAAACTTGTAGTGGAAAGGAGAATTTTGTTAGATGGA 1611
||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||||||
Sbjct 1556 TCATGGTTTCACATATCAAAGCTAAAACCTGTAGTCGAAAGAAGAATTTTGTTAGATGGA 1615
Query 1612 TTTGATTTTGATAAACTTGTTGTTTGAAGAAGGATTCGAAAATTTTGGTTACTGGTTTGT 1671
||||||||||||| |||||||||||| || || |||| ||||||||||||||||||||||
Sbjct 1616 TTTGATTTTGATAGACTTGTTGTTTGGAGGAG-ATTCAAAAATTTTGGTTACTGGTTTGT 1674
Query 1672 CTCAGACTAATATAA-TGGTTGTGACTTGTTGGATCAAAATTC 1713
||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1675 CTCAGACTAATATAAATGGTTGCAACTTGTTGGATCAAAATTC 1717
> AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein
47A | chr1:18356886-18360150 REVERSE LENGTH=1688
Length=1688
Score = 968 bits (524), Expect = 0.0
Identities = 982/1191 (82%), Gaps = 79/1191 (7%)
Strand=Plus/Plus
Query 322 GCAGCAGCAGCAACAGTGGATGGCTGCG--GCCATGCAATATCCAGCGGCGGCGAT-GAT 378
||| || || ||||| |||||||||||| | || |||||| || || || || || | |
Sbjct 126 GCAACAACAACAACAATGGATGGCTGCGATG-CA-GCAATACCCTGCAGCTGCTATGGCT 183
Query 379 GATGATGCAGCAGCAACAGATGATGATGTATCCTCA--C-CAATACGTTCCGTATAATCA 435
|||||||| || ||||||||||||||||||||||| | ||||||| ||| || |||||
Sbjct 184 -ATGATGCAACAACAACAGATGATGATGTATCCTCACCCTCAATACGCTCCTTACAATCA 242
Query 436 AGGTCCTTATCAGCATCATCATCCTCAGCTTCACCAATACGGGT-CTTATCAACAGCACC 494
|| | ||||||| | || ||||||||| || |||||| | | ||||||||||||| |
Sbjct 243 AGCTGCTTATCA--A-CAGCATCCTCAG-TT--TCAATAC-GCTGCTTATCAACAGCAGC 295
Query 495 AGCAGC-A-A-CA-CA-AG-C--C-TCTTG--AC-C-GTGGATC---TGGAGATGATGTC 538
|||||| | | || || || | | | | || | ||||||| ||| |||||||||
Sbjct 296 AGCAGCAACATCACCAGAGTCAGCAGC-AGCCACGCGGTGGATCTGGTGGTGATGATGTC 354
Query 539 AAGACTCTCTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCACT-CTTG 597
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 355 AAGACTCTTTGGGTTGGTGATCTTCTTCATTGGATGGATGAGACTTATCTCCA-TACCTG 413
Query 598 CTTT-TCTCACACCGGCGAGGTTTCTTCTGTGAAAGTTATACGTAACAAGCTCACTTCTC 656
||| ||||||||| |||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 414 -TTTCTCTCACACCAATGAGGTTTCTTCTGTGAAAGTTATACGCAACAAGCAAACTTGTC 472
Query 657 AATCAGAAGGGTATGGGTTTATTGAGTTTCTTTCACGTGCTGCAGCTGAAGAAGTTCTTC 716
|||| ||||| ||||||||| ||||||||||||||||| | |||||||| |||| |||||
Sbjct 473 AATCTGAAGGATATGGGTTTGTTGAGTTTCTTTCACGTTCAGCAGCTGAGGAAGCTCTTC 532
Query 717 AGAACTATAGTGGTTCGGTG-A-TGCCAAACTCAGACCAGCCCTTCCGTATAAACTGGGC 774
||| || ||| ||| | | | |||| ||| | || ||||| |||||| ||||||||||
Sbjct 533 AGAGCTTTAGCGGT--GTTACAATGCCGAACGCGGAACAGCCTTTCCGTTTAAACTGGGC 590
Query 775 ATCTTTTAGTACTGGTGAAAAAAGAGCAGTG-GAAAATGGTCCAGATCTATCCATATTTG 833
|||||| ||||||||||| ||||||||| | || |||||||| || |||||||||||||
Sbjct 591 ATCTTTCAGTACTGGTGAGAAAAGAGCA-TCAGAGAATGGTCCTGACCTATCCATATTTG 649
Query 834 TTGGAGATTTGTCTCCAGATGTCACTGATGCTTTATTGCATGAGACCTTTTT-TGATAGA 892
||||||||||| |||||||||| | ||||||| | |||| |||||| |||| || ||||
Sbjct 650 TTGGAGATTTGGCTCCAGATGTGAGTGATGCTGTCTTGCTTGAGAC-TTTTGCTGGTAGA 708
Query 893 TATCCTTCTGTCAAAAGCGCCAAAGTTGTGATTGATTCCAACACTGGCCGGTCCAAAGGT 952
||||| ||||||||| | || |||||||||||||||||||||||||| || |||||||||
Sbjct 709 TATCCATCTGTCAAAGGTGCTAAAGTTGTGATTGATTCCAACACTGGGCGTTCCAAAGGT 768
Query 953 TACGGTTTTGTGAGGTTTGGTGATGAAAATGAGAGATCAAGGGCTTTGACAGAAATGAAT 1012
||||| ||||| |||||||||||||| |||||| ||||||| ||| ||||||||||||||
Sbjct 769 TACGGGTTTGTTAGGTTTGGTGATGAGAATGAGCGATCAAGAGCTATGACAGAAATGAAT 828
Query 1013 GGAGCTTACTGTTCGAA-CAGGCAAATGCGTGTAGGTGTTGCAACTCCC-AAAAGAGC-G 1069
|| |||| |||||| || ||||||||||||||| ||| | ||||| ||| ||||| || |
Sbjct 829 GGTGCTTTCTGTTC-AAGCAGGCAAATGCGTGTTGGTATCGCAAC-CCCGAAAAGGGCTG 886
Query 1070 ATTGCTAATCAGC-AGCAACATTCTTCACAAGCTCTGATACTGGCTGGTGGACATGGAGC 1128
| ||| | | || | ||| || |||||||||||| | ||| ||||||||||||||||
Sbjct 887 CT-GCTTA-CGGCCAACAAAATGGTTCACAAGCTCTTACACTTGCTGGTGGACATGGAGG 944
Query 1129 AAATGGTTCCATGGCTCATGGCTCGCAGTCTGATGGCGAATCAACTAACGCAACAATATT 1188
|||||||| | ||| || | ||||| ||||||| |||| ||||||||||
Sbjct 945 GAATGGTTC-A------ATG--TC----T--GATGGAGAATCAAATAACTCAACAATATT 989
Query 1189 TGTTGGCGG-CATTGACGCTGATGTTACTGACGAAGACCTCA-GACAACCTTTTTCCCAG 1246
||||||||| | |||| |||||||||||||| |||||||||| | |||||||||||| |
Sbjct 990 TGTTGGCGGTC-TTGATGCTGATGTTACTGAAGAAGACCTCATG-CAACCTTTTTCCGAT 1047
Query 1247 TTTGGCGAGGTTGTTTCAGTGAAGATACCAGTAGGCAAAGGATGTGGATTTGTCCAATTT 1306
||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 1048 TTTGGGGAGGTTGTTTCAGTGAAGATCCCAGTAGGGAAAGGATGTGGCTTTGTCCAATTT 1107
Query 1307 GCTGACAGG-AAGAGTGCTGAAGATGCTATCGAGA-CTTTGAATGGGACAGTCATCGGCA 1364
||| ||||| || |||||||| || || |||| || ||| ||| ||||||||||| || |
Sbjct 1108 GCTAACAGGCAA-AGTGCTGAGGAAGCCATCGGGAACTT-GAACGGGACAGTCATTGGGA 1165
Query 1365 AGAACACTGTCAGACTCTCTTGGGGACGAAGCCCGAACAAACAGTGGAGAGGAGACTCAG 1424
||||||||||| | || || |||||| ||||||| ||||||||||||||| | ||||| |
Sbjct 1166 AGAACACTGTCCGCCTTTCATGGGGAAGAAGCCCCAACAAACAGTGGAGAAGTGACTCTG 1225
Query 1425 GACAGC-AGTGGAATGGAGGATACTCACGAGGACAAGGTTACAACAGTGGA 1474
| || | | |||||||||||||| ||| |||| ||||| ||||||| ||||
Sbjct 1226 G-CAACCAATGGAATGGAGGATATTCAAGAGGTCAAGGATACAACAATGGA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84688319415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5