BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479433
Length=1132
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19184.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1018 0.0
> AT3G19184.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:6637443-6639278 FORWARD LENGTH=1189
Length=1189
Score = 1018 bits (551), Expect = 0.0
Identities = 744/829 (90%), Gaps = 45/829 (5%)
Strand=Plus/Plus
Query 75 AAATGGTGGAATCAGAGCTAAGCTATGAGCAGATTCGTTTGAAAAGGGTGGAAGAGAACA 134
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 111 AAATGGTGGAATCGGAGCTAAGCTATGAACAGATTCGTTTGAATAGGGTGGAAGAGAACA 170
Query 135 AGAAGAGAATGGGGGAGCTTAATCTCAACAAGCTTGCTCAATCTCTTCGTG--------T 186
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 171 AGAAGAGAATGGGGGAGCTTAATCTCAACAAGCTTGCTCAATCTCTTCGTGTCTCTTCTT 230
Query 187 C-TCTTCTTCTTCTTCCAAGCCCTCTCCAGCAAAGCCAAGGACGATGCGTATTCCGGTGG 245
| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 231 CTTCTTCTTCTTCTTCCAAGCCCTCACCAGCAAAGCCAAGAACGATGCGTATTCCAGTGG 290
Query 246 ATTTCTCGGAGGTCAGGAGATCAAGCCGTGCCAAGGGTCCACCTCCAAGTTACAAAGAGT 305
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 291 ATTTCTCGGAGGTCAGGAGATCAAGCCGTGCCAAAGGTCCACCTCCAAGTTATAAAGAGT 350
Query 306 TTGGGCTAGAACCACTGGAGAGGAGGCCAAGAAGGAGCTCTCAAAGAAGAGATCTGCTGA 365
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 351 TTGGGCTAGAACCACTGGAGAGGAGGCCAAGAAGGAGCTCTCGAAGAAGAGATTTGCTGA 410
Query 366 ACCGGGTATATGCTTCAGACGACGCAAGAATGTACGCATTCGACAGGGCAGAGAAGCTTC 425
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 411 ATCGGGTATATGCTTCGGACGACGCAAGAATGTACGCATTCGACAGGGCAGAGAAGCTCC 470
Query 426 AGTCAAGCTTAGATCCAGAAT-TCCCAAGCTTTACCAAACCAATGCTCCAATCACACGTG 484
|||||||||||||| |||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 471 AGTCAAGCTTAGATTCAGAATATGC-AAGCTTTACCAAACCAATGCTCCAATCACACGTG 529
Query 485 ACCGGAGGATTTTGGTTGGGCTTGCCACTTCCTTTTTGCAAGGCACATATGCCAAAACGT 544
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 530 ACCGGAGGATTTTGGTTGGGTTTGCCGCTTCCTTTTTGCAAGGCACATATGCCAAAACGT 589
Query 545 GATGAAATGATGACTTTGGTTGACGAGGAAGATGAGGAATCT-ATGGTGAAATACCTTGC 603
|||| ||| ||||||||||||||||| ||||| ||||||||| | || ||||||||||||
Sbjct 590 GATGTAATAATGACTTTGGTTGACGAAGAAGAGGAGGAATCTCA-GGCGAAATACCTTGC 648
Query 604 TGAGAAGAACGGTCTTAGCGGAGGCTGGAGAGGTTTCGCCATCGATCATCAGTTAGTCGA 663
| |||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||||||
Sbjct 649 TCAGAAGAACGGTCTTAGTGGAGGCTGGCGAGGTTTCGCCATTGATCACCAGTTAGTCGA 708
Query 664 TGGAGATGCTGTCGTGTTTCAACTTATCACCCGAACAATGTTTAAGGTGTATATCATTAG 723
|||||||||||| |||||||| |||||| | ||||||| ||| |||||||||||||||||
Sbjct 709 TGGAGATGCTGTAGTGTTTCACCTTATCGCTCGAACAACGTTCAAGGTGTATATCATTAG 768
Query 724 GGTAAATGAAGATGCAAACAAAGATTCAGATGGGAATGAAG-AA--GATGAAGAT--A-A 777
||||||||| ||||||||||| ||||||||||||||||| | || ||||| ||| | |
Sbjct 769 GGTAAATGATGATGCAAACAATGATTCAGATGGGAATGAGGTAAATGATGATGATTCAGA 828
Query 778 TG--A-T-AA-----T-GA-AT--T-A-AA-----CAA--GA-AA-CAGAAGGAGAA-TG 812
|| | | || | || || | | || ||| || || |||||||| || ||
Sbjct 829 TGGGAATGAAGAAGATCGAGATAATGATAATGAATCAAACGAGAAACAGAAGGA-AACTG 887
Query 813 TTTCAGAAGTTAGACAGTTGAGAAGCAGTGGTAAAAGGAAAAGAGGAGG 861
||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 888 TTTCAGAAGGTAGACAGTTGAGAAGCAGTGGTAAGAGGAAAAGACGAGG 936
Score = 224 bits (121), Expect = 1e-57
Identities = 177/201 (88%), Gaps = 16/201 (8%)
Strand=Plus/Plus
Query 903 AGGAAGAAAGTAGAGTTTCAAGGTTGAAATGGGAC-T-T-G---TACGGAAGGAGTGGGA 956
|||||||||||||||||| |||||| ||||||||| | | | || |||||||||||||
Sbjct 934 AGGAAGAAAGTAGAGTTTGAAGGTTTAAATGGGACTTCTAGTTCTATGGAAGGAGTGGGA 993
Query 957 A-AAGAACTAAAAC-TAACATAAACAGAGCTTTTTGCGA-TTATTTTGGCTGAGCAGTGA 1013
| | |||||||||| |||||| ||| |||||||||||| || |||||||||| ||||||
Sbjct 994 AGATGAACTAAAACTTAACAT-AAC--AGCTTTTTGCGAGTT-TTTTGGCTGAACAGTGA 1049
Query 1014 AGTTATGTAAT--GGGGATTTGTTTTTGTGTCTTGTAATGGAGACAAACATGGAACGTTA 1071
|||| || ||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1050 AGTTGTGCAATGAGGGGA-TTGTTTTTGTGTCTTGTTATGGAGACAAACATGGAACGTTA 1108
Query 1072 CGGCTAAATATTTTGATTTTG 1092
|||||||||||||||||||||
Sbjct 1109 CGGCTAAATATTTTGATTTTG 1129
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1097 TTTATGATTTGGATAAGGGAAAGAGAAACAAACTTT 1132
||||||||||||||||||||||||||||||||||||
Sbjct 1154 TTTATGATTTGGATAAGGGAAAGAGAAACAAACTTT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55521802770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5