BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479433 Length=1132 Score E Sequences producing significant alignments: (Bits) Value AT3G19184.1 | Symbols: | AP2/B3-like transcriptional factor fa... 1018 0.0 > AT3G19184.1 | Symbols: | AP2/B3-like transcriptional factor family protein | chr3:6637443-6639278 FORWARD LENGTH=1189 Length=1189 Score = 1018 bits (551), Expect = 0.0 Identities = 744/829 (90%), Gaps = 45/829 (5%) Strand=Plus/Plus Query 75 AAATGGTGGAATCAGAGCTAAGCTATGAGCAGATTCGTTTGAAAAGGGTGGAAGAGAACA 134 ||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 111 AAATGGTGGAATCGGAGCTAAGCTATGAACAGATTCGTTTGAATAGGGTGGAAGAGAACA 170 Query 135 AGAAGAGAATGGGGGAGCTTAATCTCAACAAGCTTGCTCAATCTCTTCGTG--------T 186 ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 171 AGAAGAGAATGGGGGAGCTTAATCTCAACAAGCTTGCTCAATCTCTTCGTGTCTCTTCTT 230 Query 187 C-TCTTCTTCTTCTTCCAAGCCCTCTCCAGCAAAGCCAAGGACGATGCGTATTCCGGTGG 245 | ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct 231 CTTCTTCTTCTTCTTCCAAGCCCTCACCAGCAAAGCCAAGAACGATGCGTATTCCAGTGG 290 Query 246 ATTTCTCGGAGGTCAGGAGATCAAGCCGTGCCAAGGGTCCACCTCCAAGTTACAAAGAGT 305 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 291 ATTTCTCGGAGGTCAGGAGATCAAGCCGTGCCAAAGGTCCACCTCCAAGTTATAAAGAGT 350 Query 306 TTGGGCTAGAACCACTGGAGAGGAGGCCAAGAAGGAGCTCTCAAAGAAGAGATCTGCTGA 365 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 351 TTGGGCTAGAACCACTGGAGAGGAGGCCAAGAAGGAGCTCTCGAAGAAGAGATTTGCTGA 410 Query 366 ACCGGGTATATGCTTCAGACGACGCAAGAATGTACGCATTCGACAGGGCAGAGAAGCTTC 425 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 411 ATCGGGTATATGCTTCGGACGACGCAAGAATGTACGCATTCGACAGGGCAGAGAAGCTCC 470 Query 426 AGTCAAGCTTAGATCCAGAAT-TCCCAAGCTTTACCAAACCAATGCTCCAATCACACGTG 484 |||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||| Sbjct 471 AGTCAAGCTTAGATTCAGAATATGC-AAGCTTTACCAAACCAATGCTCCAATCACACGTG 529 Query 485 ACCGGAGGATTTTGGTTGGGCTTGCCACTTCCTTTTTGCAAGGCACATATGCCAAAACGT 544 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 530 ACCGGAGGATTTTGGTTGGGTTTGCCGCTTCCTTTTTGCAAGGCACATATGCCAAAACGT 589 Query 545 GATGAAATGATGACTTTGGTTGACGAGGAAGATGAGGAATCT-ATGGTGAAATACCTTGC 603 |||| ||| ||||||||||||||||| ||||| ||||||||| | || |||||||||||| Sbjct 590 GATGTAATAATGACTTTGGTTGACGAAGAAGAGGAGGAATCTCA-GGCGAAATACCTTGC 648 Query 604 TGAGAAGAACGGTCTTAGCGGAGGCTGGAGAGGTTTCGCCATCGATCATCAGTTAGTCGA 663 | |||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||| Sbjct 649 TCAGAAGAACGGTCTTAGTGGAGGCTGGCGAGGTTTCGCCATTGATCACCAGTTAGTCGA 708 Query 664 TGGAGATGCTGTCGTGTTTCAACTTATCACCCGAACAATGTTTAAGGTGTATATCATTAG 723 |||||||||||| |||||||| |||||| | ||||||| ||| ||||||||||||||||| Sbjct 709 TGGAGATGCTGTAGTGTTTCACCTTATCGCTCGAACAACGTTCAAGGTGTATATCATTAG 768 Query 724 GGTAAATGAAGATGCAAACAAAGATTCAGATGGGAATGAAG-AA--GATGAAGAT--A-A 777 ||||||||| ||||||||||| ||||||||||||||||| | || ||||| ||| | | Sbjct 769 GGTAAATGATGATGCAAACAATGATTCAGATGGGAATGAGGTAAATGATGATGATTCAGA 828 Query 778 TG--A-T-AA-----T-GA-AT--T-A-AA-----CAA--GA-AA-CAGAAGGAGAA-TG 812 || | | || | || || | | || ||| || || |||||||| || || Sbjct 829 TGGGAATGAAGAAGATCGAGATAATGATAATGAATCAAACGAGAAACAGAAGGA-AACTG 887 Query 813 TTTCAGAAGTTAGACAGTTGAGAAGCAGTGGTAAAAGGAAAAGAGGAGG 861 ||||||||| |||||||||||||||||||||||| ||||||||| |||| Sbjct 888 TTTCAGAAGGTAGACAGTTGAGAAGCAGTGGTAAGAGGAAAAGACGAGG 936 Score = 224 bits (121), Expect = 1e-57 Identities = 177/201 (88%), Gaps = 16/201 (8%) Strand=Plus/Plus Query 903 AGGAAGAAAGTAGAGTTTCAAGGTTGAAATGGGAC-T-T-G---TACGGAAGGAGTGGGA 956 |||||||||||||||||| |||||| ||||||||| | | | || ||||||||||||| Sbjct 934 AGGAAGAAAGTAGAGTTTGAAGGTTTAAATGGGACTTCTAGTTCTATGGAAGGAGTGGGA 993 Query 957 A-AAGAACTAAAAC-TAACATAAACAGAGCTTTTTGCGA-TTATTTTGGCTGAGCAGTGA 1013 | | |||||||||| |||||| ||| |||||||||||| || |||||||||| |||||| Sbjct 994 AGATGAACTAAAACTTAACAT-AAC--AGCTTTTTGCGAGTT-TTTTGGCTGAACAGTGA 1049 Query 1014 AGTTATGTAAT--GGGGATTTGTTTTTGTGTCTTGTAATGGAGACAAACATGGAACGTTA 1071 |||| || ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1050 AGTTGTGCAATGAGGGGA-TTGTTTTTGTGTCTTGTTATGGAGACAAACATGGAACGTTA 1108 Query 1072 CGGCTAAATATTTTGATTTTG 1092 ||||||||||||||||||||| Sbjct 1109 CGGCTAAATATTTTGATTTTG 1129 Score = 67.6 bits (36), Expect = 2e-10 Identities = 36/36 (100%), Gaps = 0/36 (0%) Strand=Plus/Plus Query 1097 TTTATGATTTGGATAAGGGAAAGAGAAACAAACTTT 1132 |||||||||||||||||||||||||||||||||||| Sbjct 1154 TTTATGATTTGGATAAGGGAAAGAGAAACAAACTTT 1189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55521802770 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5