BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479439
Length=2103
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19240.1 | Symbols: | Vacuolar import/degradation, Vid27-re... 3286 0.0
AT4G33400.1 | Symbols: | Vacuolar import/degradation, Vid27-re... 250 4e-65
AT3G19250.1 | Symbols: | Protein of unknown function (DUF677) ... 84.2 5e-15
> AT3G19240.1 | Symbols: | Vacuolar import/degradation, Vid27-related
protein | chr3:6664250-6666558 FORWARD LENGTH=2215
Length=2215
Score = 3286 bits (1779), Expect = 0.0
Identities = 1992/2095 (95%), Gaps = 13/2095 (1%)
Strand=Plus/Plus
Query 1 TTTT-GCTACTTCTCTCCGTTTCCGTTCTTCTTCTAGTAGCTGATCGAATTCCATGGGTA 59
|||| |||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 81 TTTTGGCTACTTCTCTCCGATTCTGTTCTTCTTGTAGTAGCTGATCGCATTCCATGGGTA 140
Query 60 CTTCTCAAAGTCGCGAAGATCGAATCACCGAATCGGATACGGATTCCGATTCTGATTACT 119
||||||| ||||| ||||||||||||| |||||||||||| || |||||||| |||||||
Sbjct 141 CTTCTCAGAGTCGTGAAGATCGAATCAGCGAATCGGATACAGAATCCGATTCAGATTACT 200
Query 120 ATGACGAAGAAGACGAAGATCAATACGATGACGCGAAGAAGCAAGGATCGTCGTCTGTTT 179
|||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 201 ATGAAGAAGAAGACGAGGATCAATACGATGACGCGAAGAAGCAAGGATCATCATCTGTTT 260
Query 180 CTGGTTCAGGACCGTCTGA---TTCTTCTTCTTCAGGACCATCTGATTCATCGTCTCTCG 236
||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 261 CTGGTACAAGACCGTCTGATTCTTCTTCTTCTTCAGGACCAACTGATTCATCGTCTCTCG 320
Query 237 ATATTGAGGAGAAGCTAAAAGCCTTGAAGTTGAAATACCCATCTTCTTCTTCCGTAACGC 296
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 321 ATATTGAGCAGAAGCTAAAAGCCTTGAAGTTGAAATACCCATCTTCTTCTTCCGTAACAC 380
Query 297 TCAAGATGAAGAACGCGGTTAAGCTTTACCGCCATATCGGTGGAAACACACCCAAAGCGA 356
||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 381 CCAAGATGAAGAACGCTGTGAAGCTTTACCGCCATATCGGGGGAAACACACCCAAAGCGA 440
Query 357 AATGGATCATCACTGATAAAATGACATCGTACAAGTTTGTGAAAACTTCGACGGCT-GAT 415
|||||||| | | ||||| |||||||| ||||||||||||||||||||| | | | |||
Sbjct 441 AATGGATCGTTTCGGATAAGATGACATCATACAAGTTTGTGAAAACTTCGTCAG-TGGAT 499
Query 416 GGAGAAGATATTGGTGATTATGATGATTGTGAAGAATCAGGTGAAGGAGGTGAGTCTTTT 475
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 GGAGAAGATATTGATGATTATGATGATTGTGAAGAATCAGGTGAAGGAGGTGAGTCTTTT 559
Query 476 TGGTTTCTGGGTGTTGGTTCTAAGGTTAAAGCTAGGGTTTCCACGGATATGCAGTTGAAA 535
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 560 TGGTTTCTGGGTGTTGGTACTAAGGTTAAAGCTAGGGTTTCTACGGATATGCAGTTGAAA 619
Query 536 ATGTTTGGGGATCAGCGTAGAGTTGATTTTGTGAGTAATGGTGTTTGGGCTTTGAAGTTC 595
|||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 620 ATGTTTGGGGATCAACGTAGGGTTGACTTTGTTAGTAATGGTGTTTGGGCTTTGAAGTTC 679
Query 596 TTGACGGATGAGGACTATAGGAAGTTTGTTACTAGGTTTCAGGACTATCTGTTTGAGAAT 655
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TTGACGGATGAGGATTATAGGAAGTTTGTTACTAGGTTTCAGGACTATCTGTTTGAGAAT 739
Query 656 GTGTATAAGATCAGGGCAAGTGAGGAGAACAGGA-TTAAAGTGTATGGGAAAGATTTCAT 714
||||||||||||||||||||||||||||| | || ||||||||||||| |||||||||||
Sbjct 740 GTGTATAAGATCAGGGCAAGTGAGGAGAATA-GAGTTAAAGTGTATGGTAAAGATTTCAT 798
Query 715 TGGGTGGGCTAATCCTGAAGCTGCTGATGATTCTATGTGGGAGGATGCTGAAGCTCCACC 774
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TGGGTGGGCTAATCCTGAGGCTGCTGATGATTCTATGTGGGAGGATGCTGAAGCTCCACC 858
Query 775 TGAGGAAGAGGAAACTCAGGCCAAGAGAAATACGGATTTGACGGAAGAGTTCGAAGAGGT 834
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 859 TGAGGAAGAGGAAACTCAGGGGAAGAGGAATACGGATTTGACGGAAGAGTTTGAAGAGGT 918
Query 835 GGCTAATGGTGGAGTGCAGAGTTTGACTTTGGGAGCGTTGGATAATTCATTCTTGGTGAA 894
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 919 GGCTAATGGTGGAGTGCAGAGTTTGACTTTGGGAGCGTTGGATAATTCGTTCTTGGTGAA 978
Query 895 TGATTATGGGGTTCAGGTTTATAGGAATATGGAGCGTGGGATTCATGGGAAAGGTGTGTG 954
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 979 TGATTATGGGGTTCAGGTTTATAGGAATATGGAGCGTGGTATTCATGGGAAAGGTGTGTG 1038
Query 955 CGTGAGATTTGATTCTGGAAATTCAAAGTTCGGATC-GGGTTCGAGCCAGACAACACCAA 1013
||||||||||||||||||||| |||||||||||||| ||| || |||||||||||||| |
Sbjct 1039 CGTGAGATTTGATTCTGGAAACTCAAAGTTCGGATCAGGG-TCAAGCCAGACAACACCGA 1097
Query 1014 ACAAGGCTCTTTTGATGAGGGCAGAGACTAATATGATGCTGATGAGTCCAGCTAAACAAG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ACAAGGCTCTTTTGATGAGGGCAGAGACTAATATGATGCTGATGAGTCCAGCTAAACAAG 1157
Query 1074 GGAAACCAAATTCCACTGGTGTTAAGCAGCTCGACATTGAGTCAGGGAAGATTGTTACTG 1133
||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1158 GGAAACCTAACTCCACTGGTGTTAAGCAGCTCGATATAGAGTCAGGGAAGATTGTTACTG 1217
Query 1134 AATGGAAATTCGAGAAAGATGGGACTGAAATCATGATGAGGGACATAACAAATGATACCA 1193
|||||||||| |||||||| ||||||||||||| |||||| |||||||||||||||||||
Sbjct 1218 AATGGAAATTTGAGAAAGACGGGACTGAAATCACGATGAGAGACATAACAAATGATACCA 1277
Query 1194 AAGGGTCGCAGCTAGATCCATCAGAGTCTACCTTTTTGGGATTGGATGACAATAGGCTGT 1253
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1278 AAGGGTCGCAGCTAGATCCATCAGAGTCAACGTTTTTGGGATTGGATGACAATAGGCTGT 1337
Query 1254 GTCAATGGGACATGAGGGACAGGAGAGGTATAGTGCAGAACATCGAATCTCCCATCTTGG 1313
||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||
Sbjct 1338 GTCAATGGGACATGAGGGATAGGAGAGGTATAGTGCAGAACATTGACTCTCCCATCTTGG 1397
Query 1314 AATGGACTCAAGGCCATCAGTTTTCTAGAGGAACAAATTTCCAGTGCTTTGCAACTACTG 1373
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1398 AATGGACTCAAGGCCATCAGTTCTCTAGAGGAACAAATTTCCAGTGCTTTGCAACTACTG 1457
Query 1374 GAGATGGGTCAATTGTTGTGGGATCGCTTGACGGAAAGATAAGGCTGTATTCAAAGACCT 1433
||||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 1458 GAGATGGGTCAATCGTTGTGGGATCACTTGACGGAAAGATAAGACTTTACTCAAAGACCT 1517
Query 1434 CAATGAGAATGGCAAAAACGGCTTTTCCAGGGCTCGGTTCACCAATTACACATGTGGACG 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 CAATGAGAATGGCAAAAACGGCTTTTCCAGGGCTCGGTTCACCAATTACACATGTGGACG 1577
Query 1494 TTTCTTATGATGGAAAATGGATATTGGGCACAACAGATACGTACTTGGTTCTTATTTGCA 1553
||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1578 TTTCTTATGATGGGAAATGGATACTGGGCACCACAGATACGTACTTGGTTCTTATTTGCA 1637
Query 1554 CCCTTTTCACAGACAAAGATGGTCGGACAAAAACAGGATTTAGCGGAAGAATGGGAAACA 1613
||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1638 CCCTTTTCACAGACAAAAATGGTCTGACAAAAACAGGCTTTAGCGGAAGAATGGGAAACA 1697
Query 1614 AAATACCAGCGCCGAGGCTGCTGAAGCTAACACCACTAGATTCACACTTGGCAGGAAAAG 1673
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 AAATACCAGCCCCTAGGCTGCTGAAGCTAACACCACTAGATTCACACTTGGCAGGAAAAG 1757
Query 1674 ATAATAAGTTTCATGGCGGTCATTTCTCATGGGTAACAGAGAGCGGGAAGCAAGAGAGAC 1733
|||||||||||||||||||||| |||||||||||||| ||||| || |||||||||||||
Sbjct 1758 ATAATAAGTTTCATGGCGGTCACTTCTCATGGGTAACTGAGAGTGGAAAGCAAGAGAGAC 1817
Query 1734 ATATAGTAGCAACAGTGGGGAAATTCAGTGTAATATGGGACTTGGAGCGGGTGAAGAACA 1793
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1818 ACATAGTAGCAACAGTGGGGAAATTCAGTGTGATATGGGACTTGGAGCGGGTGAAGAACA 1877
Query 1794 GTGCACACGAGTGCTATAGGAACCAACAAGGACTCAAGAGCTGTTACTGCTACAAGATCT 1853
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 GTGCACACGAATGCTATAGGAACCAACAAGGACTCAAGAGCTGTTACTGCTACAAGATCT 1937
Query 1854 TGTTGAAGGATGAGTCAATTGTTGAGAGCCGATTCATGCACGATAACTTCTCCTTCTCCG 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1938 TGTTGAAGGATGAGTCAATTGTTGAGAGCCGATTCATGCACGATAACTTCTCCTTCTCCG 1997
Query 1914 GTAACAAATCGCCAGAAGCACCGCTTGTGGTTGCCACTCCTTTGAAAGTCAGCTCCATCA 1973
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1998 GTAACAAATCGCCAGAAGCACCGCTTGTGGTTGCCACGCCTTTGAAAGTCAGCTCCATCA 2057
Query 1974 GCCTCTCTGGAAAACGACTTTAAAAAAC-AGTTTGAATC-TAAAAGCTTTCCTTTGGTTT 2031
|||||||||||||||||||||||| ||| |||||| ||| |||| |||||| |||| |||
Sbjct 2058 GCCTCTCTGGAAAACGACTTTAAATAACCAGTTTGTATCGTAAA-GCTTTCTTTTGTTTT 2116
Query 2032 TGTAATGAAATTTGATTGTAGTGTTTGGCTTTTTGTCATCGTGTGAAGGTTTGTG 2086
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 TGTAATGAAATTTGATTGTAGTGTTTGGCTTTTTGTCATCGTGTGAAGGTTTGTG 2171
> AT4G33400.1 | Symbols: | Vacuolar import/degradation, Vid27-related
protein | chr4:16077917-16080521 REVERSE LENGTH=2321
Length=2321
Score = 250 bits (135), Expect = 4e-65
Identities = 878/1219 (72%), Gaps = 121/1219 (10%)
Strand=Plus/Plus
Query 698 TATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAAGCTGCTGATGATTCTATGTGGGAG 757
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 751 TATGGGAAAGATTTCATTGGGTGGGCTAATCCTGAAGCTGCTGATGATTCCATGTGGGAA 810
Query 758 GATGCTGA--A------GCTCCA---CCTGAGGAAGAGGA-----AACTCAGGCCAAGAG 801
|||||||| | ||| || || |||| ||||| ||||| ||| | |||
Sbjct 811 GATGCTGATGATATTTTGCTTCAAAGCCC-AGGAGGAGGATCTGCAACTCCGGCTA-GAG 868
Query 802 AAATAC-GGATTTGACGGAAGAGTTCGAAGAGG-TGGCTAA-TG-GTGG-AGTGCAGAGT 856
| | || ||||||||| || | || ||||| | | | || || | || | | || ||
Sbjct 869 ATACACAGGATTTGACTGAGGCCTTTGAAGAAGCTA-C-AAGTGAG-GGCA-TACATAGC 924
Query 857 TT-GACTTTGGGAGCGTTGGATAATT-CATTCTTGGTGAATGATTATGGGGTTCAGGTTT 914
|| | || | || || || |||||| | |||| | || | |||| ||| |||||||||
Sbjct 925 TTAG-CTCTAGGTGCTTTAGATAATAGCTTTCTAGTTGGA-GATTCTGGTATTCAGGTTT 982
Query 915 AT-AGGAATATG-GAGC-GTGGGATTCATGGGAAAGGTGTGTGCGTGAGA-TTTGATTCT 970
| | ||| ||| || | | |||||||| ||||||||||| || || | | ||||| ||
Sbjct 983 -TCAAGAACATGAGA-CAG-GGGATTCAAGGGAAAGGTGTTTGTGTTA-ACTTTGAGCCT 1038
Query 971 GGAAATTCAAAGTTCGGA-TCGGGTTCGAGCCAGACAACACCAAACAAGGCTCTTTTGAT 1029
|| || | || || | || ||| | || || | | || ||||||||| | ||
Sbjct 1039 GG---TT-ATGGT-CGAACTCA--TTCTT-C-AG-CA-C-CGAAG-AAGGCTCTTCTCAT 1085
Query 1030 GAGGGCAGAGACTAATATGATGCTGATGAGTCCAGCTAAACAAGGGAAAC-CAA-ATTCC 1087
||| || |||||||||||| |||| |||||||| || | | |||| | ||||
Sbjct 1086 GAGAGCTGAGACTAATATGCTGCTCATGAGTCC---TATG-A-GCCAAACGCCTCATTC- 1139
Query 1088 ACT-GGTGTTAAGCAGCTCGACATTGAGTCAGGGAAGATTGTTACTGAATGGAAATTCGA 1146
|| ||| | | ||||| |||||||| | ||||| ||| || | || ||||| || ||
Sbjct 1140 ACGAGGTATCCATCAGCTTGACATTGAAACCGGGAAAATTATTTCAGAGTGGAAGTTTGA 1199
Query 1147 GAAAGATGGGACTGAA-ATCA-TGATGAGGGACATAACAAATGATACCAAAGG-GTCGCA 1203
||||||||| | || | ||| | ||||| ||||| || |||||| ||||| | | ||
Sbjct 1200 GAAAGATGG-AGTGGATATCTCT-ATGAGTGACATTACTAATGATGGTAAAGGTG-CTCA 1256
Query 1204 GCTAGATCCATCAGAGTCTACCTTT-TTGGGATTGGATGACAATAGGCTGTGTCAA-TGG 1261
| |||||||| | ||| || ||| |||| | |||| |||||||||| || || |||
Sbjct 1257 ATTGGATCCATCTGCGTCAACGTTTCTTGGTCT-GGATAACAATAGGCTTTG-CAGGTGG 1314
Query 1262 GACATGAGGGACAGGAGA-GGTATAGTGCAGAA-C-----A-T-CGAAT-CTCCCA-TCT 1310
|| ||| | ||| | | | || || || ||| | | | | ||||| |||| | |||
Sbjct 1315 GATATGCGTGACCG-ATATGGGATGGTTCAGGATCTTGCTACTGCGAATACTCC-AGTCT 1372
Query 1311 TGGAAT-GGACTCAAGGCCATCAGTTTTCTAGAGGAACAAA-TTTCCAGTGCTTTGCAAC 1368
|| ||| || | || || ||||||||||||||||| || || |||| |||||||||||||
Sbjct 1373 TG-AATTGGGCACAGGGGCATCAGTTTTCTAGAGGGACTAACTTTC-AGTGCTTTGCAAC 1430
Query 1369 TACTGGAGATGGGTCAATTGTTGTGGGATCGCTTGACGG-AAAGATAAGGCTGTATTCAA 1427
|||||| ||||| ||||||||||| || || ||||| || ||| || || || || || |
Sbjct 1431 TACTGGTGATGGCTCAATTGTTGTTGGCTCTCTTGATGGCAAA-ATTAGACTCTACTCGA 1489
Query 1428 AG-ACCTCAATGAGA-ATGGCAAAAACGGCTTTTCCAGGGCTCGGTTCACCAATTACACA 1485
| | | | ||||| | |||||| |||||||| || || || ||| |||| |||| ||
Sbjct 1490 -GCAACACTATGAGGCA-GGCAAAGACGGCTTTCCCTGGACTTGGTGCACCTGTTACTCA 1547
Query 1486 TGTGGACGTTTC-TTATGATGGAAAATGGATA-TTGGGCACAACAGATACGTACTTGGTT 1543
|||||| | | | || ||||| |||||||| |||| ||||| || || || ||| ||
Sbjct 1548 TGTGGATGCTACATTC-GATGGGAAATGGATTGTTGGT-ACAACTGACACATATTTGATT 1605
Query 1544 CTTATTTGCACCCTTTTCACAGACAAA-GATGGTCGGA-CAAAAACAGGATTT-AGCGGA 1600
|||| || ||||||||||| |||||| | ||| | | |||| || || || || ||
Sbjct 1606 GTTATCTGTACCCTTTTCACTGACAAAAG-TGG-CAAAACAAAGACCGGCTTCGAG-GGT 1662
Query 1601 AGAATGGGAAACAAAATA-CCAGCGCCGAGGCTGCTGAAGCTAACACCACTAGATTCACA 1659
| |||||||| || || || || || ||| |||| ||| | | || || ||| ||||
Sbjct 1663 CGCATGGGAAATAAGATTGCC-GCACCAAGGTTGCTTAAGTTGAGGCCTCTTGATGCACA 1721
Query 1660 CTTGGCAGGAAAAGATAATAAGTTTC--A-TGGCGGTCA-TTTCTCATGGGTAACAGAG- 1714
|| || ||| || || ||||| | | || | ||| ||| || ||||| || |||
Sbjct 1722 TTTAGCTGGATCTGACAACAAGTTCCGCAATG-C--TCAGTTT-TCTTGGGTCACGGAGG 1777
Query 1715 AGCGGGAAGCAAGAGAGACATATAGTAGCAACAGTGGGGAAATTCAGTGTAATATGGGAC 1774
| ||||| || ||| | ||| | ||||| || || || || |||||||| |||||| ||
Sbjct 1778 AT-GGGAAACAGGAGCGTCATGTGGTAGCTACTGTTGGCAAGTTCAGTGTGATATGGAAC 1836
Query 1775 TTGGAGCGGGTGAAGAACAG-TGCACACGAGTGCTAT-AGGAACCAACAAGGACTCAAGA 1832
|| ||| ||||||||| | | | || || ||||| | || | | |||| || ||||
Sbjct 1837 TTTCAGCAGGTGAAGAATGGAT-CTCATGAATGCTACCATGATC-AGGAAGGGCTGAAGA 1894
Query 1833 GCTGTTACTGCTACAAGAT 1851
|| ||||||||||||||
Sbjct 1895 AATGCTACTGCTACAAGAT 1913
> AT3G19250.1 | Symbols: | Protein of unknown function (DUF677)
| chr3:6666842-6668395 REVERSE LENGTH=1470
Length=1470
Score = 84.2 bits (45), Expect = 5e-15
Identities = 74/86 (86%), Gaps = 10/86 (12%)
Strand=Plus/Minus
Query 1826 CTC-AAGAGCTGTTACTGCTACAAGATCTTGTTGAAGGATGAGT--CA--A-T---T-GT 1875
||| |||||||||||||||||||||||||||||||||||||||| || | | | ||
Sbjct 251 CTCAAAGAGCTGTTACTGCTACAAGATCTTGTTGAAGGATGAGTGTCATGAGTCAATTGT 192
Query 1876 TGAGAGCCGATTCATGCACGATAACT 1901
||||||||||||||||||| || |||
Sbjct 191 TGAGAGCCGATTCATGCACAATTACT 166
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104266531965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5