BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479442
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19270.1 | Symbols: CYP707A4 | cytochrome P450, family 707, ... 2355 0.0
> AT3G19270.1 | Symbols: CYP707A4 | cytochrome P450, family 707,
subfamily A, polypeptide 4 | chr3:6673727-6676520 REVERSE
LENGTH=1685
Length=1685
Score = 2355 bits (1275), Expect = 0.0
Identities = 1426/1497 (95%), Gaps = 17/1497 (1%)
Strand=Plus/Plus
Query 69 TAATAATCGATGGCTGAAATTTGGTTATTGGTTGTACCAAGCCTCATTTTTTGCTTGCTT 128
|||||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||
Sbjct 112 TAATAATCGATGGCTGAAATTTGGTTCTTGGTTGTACCAATCCTCATCTTATGCTTGCTT 171
Query 129 TTGGTAAGAGTGATTGTTTCAAAGAAGAATAAGAACAGTAGAGGTAAGCTTCCTCCTGGT 188
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 172 TTGGTAAGAGTGATTGTTTCAAAGAAGAAAAAGAACAGTAGAGGTAAGCTTCCTCCTGGT 231
Query 189 TCCATGGGATGGCCTTACTTAGGAGAGACTCTACAACTCTATTCACAAAACCCCAATGTT 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TCCATGGGATGGCCTTACTTAGGAGAGACTCTACAACTCTATTCACAAAACCCCAATGTT 291
Query 249 TTCTTTACCTCCAAGCAAAAGAGATATGGAGAGATATTCAAAACCCGAATCCTCGGCTAT 308
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTCTTCACCTCCAAGCAAAAGAGATATGGAGAGATATTCAAAACCCGAATCCTCGGCTAT 351
Query 309 CCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTCCTTGTGACTCATGCCCAT 368
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 352 CCATGCGTGATGTTGGCTAGCCCTGAGGCTGCGAGGTTTGTACTTGTGACTCATGCCCAT 411
Query 369 ATGTTCAAACCAACTTATCCGAGAAGCAAAGAGAAGCTGATAGGACCCTCTGCACTCTTT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ATGTTCAAACCAACTTATCCGAGAAGCAAAGAGAAGCTGATAGGACCCTCTGCACTCTTT 471
Query 429 TTTCACCAAGGAGATTATCATTCCCATATAAGGAAACTTGTTCAATCTTCTTTATACCCT 488
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 472 TTCCACCAAGGAGATTATCATTCCCATATAAGGAAACTTGTTCAATCCTCTTTCTACCCT 531
Query 489 GAAACCATCCGTAAACTCATCCCTGATATCGAGCACATTGCCCTTTCTTCCTTACAATCT 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GAAACCATCCGTAAACTCATCCCTGATATCGAGCACATTGCCCTTTCTTCCTTACAATCT 591
Query 549 TGGGCCAATATGCATATTGTCTCTACCTACCAGGAGATGAAGAAGTTTGCGTTCGATGTG 608
||||||||||||| |||||||| ||||||||||||||||||||||| || || ||||||
Sbjct 592 TGGGCCAATATGCCGATTGTCTCCACCTACCAGGAGATGAAGAAGTTCGCCTTTGATGTG 651
Query 609 GGTATTCTAGCCATTTTTGGGCATTTGGAGTGTTCTTACAAAGAGATCTTGAAACATAAT 668
|||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 652 GGTATTCTAGCCATATTTGGACATTTGGAGAGTTCTTACAAAGAGATCTTGAAACATAAC 711
Query 669 TACAATATTGTGGACAAAGGCTACAACTCTTTTCCCATGAGTATCCCCGGAACATCTTAT 728
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 712 TACAATATTGTGGACAAAGGCTACAACTCTTTCCCCATGAGTCTCCCCGGAACATCTTAT 771
Query 729 CACAAAGCTCTCATGGCGAGAAAGCGGCTAAAGACGATAGTAAGCGAGATTATACGCGTA 788
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
Sbjct 772 CACAAAGCTCTCATGGCGAGAAAGCAGCTAAAGACGATAGTAAGCGAGATTATATGCGAA 831
Query 789 AGAAGAGAGAAAAGGGTCTTGCAAACGGACTTTCTCGGTCATCTGCTCAACTTCAAGGAC 848
|||||||||||||||| |||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 832 AGAAGAGAGAAAAGGGCCTTGCAAACGGACTTTCTTGGTCATCTACTCAACTTCAAGAAC 891
Query 849 GAAAAAGGTCGTGTTCTAACCCAAGAACAGATTGCAGACAACATCATCGGAGTCCTTTTC 908
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAAAAAGGTCGTGTGCTAACCCAAGAACAGATTGCAGACAACATCATCGGAGTCCTTTTC 951
Query 909 GCCGCACAAGACACGACAGCTAGTTGCTTAACTTGGATTCTTAAGTACTTACATGATGAT 968
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GCCGCACAGGACACGACAGCTAGTTGCTTAACTTGGATTCTTAAGTACTTACATGATGAT 1011
Query 969 CAGAAGCTTCTAGAGGCTGTTAAGGCTGAGCAAAGGGCAATATATGAAGAAAACAGTAGA 1028
||||| |||||||| ||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 1012 CAGAAACTTCTAGAAGCTGTTAAGGCTGAGCAAAAGGCTATATATGAAGAAAACAGTAGA 1071
Query 1029 GAGAAGAAATCTTTAACATGGGGACAAACGAGGAATATGCCACTAACACATAAGGTTATA 1088
||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1072 GAGAAGAAACCTTTAACATGGAGACAAACGAGGAATATGCCACTGACACATAAGGTTATA 1131
Query 1089 GTTGAAAGCTTGAGGATGGCAAGCATCATATCCTTCACATTCAGAGAAGCAGTGGTTGAT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GTTGAAAGCTTGAGGATGGCAAGCATCATATCCTTCACATTCAGAGAAGCAGTGGTTGAT 1191
Query 1149 GTTGAATATAAGGGATATTTGATACCTAAGGGATGGAAAGTGATGCCACTATTTCGGAAT 1208
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 GTTGAATATAAGGGATATTTGATACCTAAGGGATGGAAAGTGATGCCACTGTTTCGGAAT 1251
Query 1209 ATTCATCACAATCCGAAATATTTTTCAAACCCTGAGGTTTTCGATCCATCTAGATTTGAG 1268
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1252 ATTCATCACAATCCGAAATATTTTTCAAACCCTGAGGTTTTCGACCCATCTAGATTCGAG 1311
Query 1269 GTGAATCCGAAGCCGAATACATTCATGCCATTTGGAAGTGGAGTTCATGCTTGTCCCGGG 1328
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1312 GTAAATCCGAAGCCGAATACATTCATGCCTTTTGGAAGTGGAGTTCATGCTTGTCCCGGG 1371
Query 1329 AACGAACTCGCCAAGTTACAGATTCTTATATTTCTCCACCATTTAACTTCCAATTTCCGA 1388
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1372 AACGAACTCGCCAAGTTACAAATTCTTATATTTCTCCACCATTTAGTTTCCAATTTCCGA 1431
Query 1389 TGGGAAGTGAAGGGAGGCGAGAAAGGAATACAGTACAGTCCATTTCCGATACCTCAAGAC 1448
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1432 TGGGAAGTGAAGGGAGGAGAGAAAGGAATACAGTACAGTCCATTTCCAATACCTCAAAAC 1491
Query 1449 GGTCTTCCCGCTACATTTCGTCGACATTCTCTTTAGTTCTTTAGTTAAACCATCAAAGTC 1508
||||||||||||||||||||||||||||||||||||||| ||| || || | |
Sbjct 1492 GGTCTTCCCGCTACATTTCGTCGACATTCTCTTTAGTTCCTTA---AA-CC-T-----T- 1540
Query 1509 TATTACTAATCTTTGTCT-TAATTAGCCAAAAT-TAATCTAAATTCGAT-Taaaaaa 1562
| | | |||||||||| | || ||||||||| | ||||| ||||||||| |||||||
Sbjct 1541 TGT-AGTAATCTTTGT-TGTAGTTAGCCAAA-TCTAATCCAAATTCGATATAAAAAA 1594
Score = 75.0 bits (40), Expect = 2e-12
Identities = 40/40 (100%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1588 ACATGTAACAACTATGATGAAGTAAAATGTCGATTCCGGT 1627
||||||||||||||||||||||||||||||||||||||||
Sbjct 1646 ACATGTAACAACTATGATGAAGTAAAATGTCGATTCCGGT 1685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5