BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479443
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19280.1 | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltr... 2575 0.0
AT1G49710.1 | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltr... 1059 0.0
> AT3G19280.1 | Symbols: FUT11, ATFUT11, FUCT1, FUCTA | fucosyltransferase
11 | chr3:6681196-6683892 REVERSE LENGTH=1810
Length=1810
Score = 2575 bits (1394), Expect = 0.0
Identities = 1630/1740 (94%), Gaps = 31/1740 (2%)
Strand=Plus/Plus
Query 19 AAATCGTCGCTTTGTTAATGGGTGTTTTCTCCAATCTCCGAGGTCCTAAAATTGGATCGA 78
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 75 AAATCGTCGCTTTGATAATGGGTGTTTTCTCCAATCTTCGAGGTCCTAAAATTGGATTGA 134
Query 79 CCCATGAAGAATTGCC--T-GTAGCCAATGG--CT-CTTCTTCTTCTTCGTCTACTTCCT 132
|||||||||||||||| | ||||||||||| || ||||||||||||||||| ||||||
Sbjct 135 CCCATGAAGAATTGCCTGTAGTAGCCAATGGCTCTACTTCTTCTTCTTCGTCTCCTTCCT 194
Query 133 CTTTCAAGCGTAAAGTCTCGACCTTTTTGCCAATCTGCGTGGCTCTGGTTATCATCATCG 192
|||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||
Sbjct 195 CTTTCAAGCGTAAAGTCTCGACCTTTTTGCCAATCTGCGTGGCTCTTGTCGTCATTATCG 254
Query 193 AGATCGGGTTCCTGTGTCGGCTCGATAACGCTCCTTTGGTCGATACGTTGACCCATTTTT 252
||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 255 AGATCGGGTTCCTCTGTCGGCTCGATAACGCTTCTTTGGTCGATACGTTAACCCATTTTT 314
Query 253 TCACCAAGTCGTCGTCCGATTTGAAAGTTGGGTCGGGAATGGAGAAATGCCAGGAGTGGT 312
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 315 TCACCAAGTCGTCGTCCGATTTGAAAGTTGGGTCAGGAATAGAGAAATGCCAGGAGTGGT 374
Query 313 TAGAGAGAGTGGACTCAGTGACTTATTCTAGAGATTTCAGTAAAAATCCAATCTTTATCG 372
||||||||||||| ||||| ||||||||||||||||||| |||| |||| || ||||||
Sbjct 375 TAGAGAGAGTGGATTCAGTTACTTATTCTAGAGATTTCACTAAAGATCCGATTTTTATCT 434
Query 373 CTGGTAGTAACAAGGACTTCGAATCGTGTTCTGTTGATTGTGTTATGGGATTCAGTTCAG 432
|||||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||
Sbjct 435 CTGGTAGTAACAAGGACTTCAAATCGTGCTCTGTTGATTGTGTAATGGGATTCACTTCAG 494
Query 433 ATAAGAAACCCGATGCGGCGTTTGGATTAAGTCATCAACCTGGAACACTCAGTATAATCC 492
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 495 ATAAGAAACCTGATGCGGCTTTTGGATTAAGTCATCAACCTGGAACACTCAGTATAATCC 554
Query 493 GTTCCATGGAATCGGCACAGTACTATCAAGAGAACAATCTTGCTCAAGCACGACGGAGGG 552
||||||||||||| |||||||| || |||||||| |||||||||||||||||||||| |
Sbjct 555 GTTCCATGGAATCAGCACAGTATTACCAAGAGAATAATCTTGCTCAAGCACGACGGAAAG 614
Query 553 GTTATGATGTTGTGATGACAACTAGTCTGTCATCAGATGTTCCTGTTGGGTATTTTTCAT 612
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GTTATGATATTGTGATGACAACTAGTCTGTCATCAGATGTTCCTGTTGGGTATTTTTCAT 674
Query 613 GGGCGGAATATGATATTATGGCTCCAGTGCATCCAAAGACCGAGAAAGCTCTTGCTGCTG 672
||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 675 GGGCGGAATATGATATTATGGCTCCAGTGCAACCAAAAACAGAGAAAGCTCTTGCTGCTG 734
Query 673 CTTTTATATCCAATTGTGCGGCTCGGAATTTCCGCCTGCAAGCTCTTGAAGCCTTAATGG 732
||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 735 CTTTTATTTCCAATTGCGCCGCTCGGAATTTCCGCCTGCAAGCTCTTGAAGCCTTAATGA 794
Query 733 AGGCGAATGTTAAGATTGATTCTTATGGTGGTTGTCACCGGAATCGGGATGGGAGTGTGG 792
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGACGAATGTTAAGATTGATTCTTATGGTGGTTGTCACCGGAATCGGGATGGGAGTGTGG 854
Query 793 AGAAGGTTGAAGCTCTTAAGCACTACAAATTCAGTCTAGCTTTTGAGAACACCAACGAGG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGAAGGTTGAAGCTCTTAAGCACTACAAATTCAGTCTAGCTTTTGAGAACACCAACGAGG 914
Query 853 AGGACTACGTCACAGAGAAGTTCTTCCAATCTCTAGTTGCTGGATCTGTCCCTGTGGTTG 912
|||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 915 AGGATTATGTCACAGAGAAGTTCTTCCAATCTCTAGTCGCTGGATCTGTCCCTGTGGTTG 974
Query 913 TTGGAGCTCCAAATATAGAAGAATTTGCACCTTCTCCTGACTCATTCCTTCACATTAAGC 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TTGGAGCTCCAAATATAGAAGAATTTGCACCTTCTCCTGACTCATTCCTTCACATTAAGC 1034
Query 973 AGATGGATGATGTCAAGGCAGTTGCAAAGAAAATGAAGTATCTTGCGGATAACCCTGACG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 AGATGGATGATGTCAAGGCAGTTGCAAAGAAAATGAAGTATCTTGCGGATAACCCTGACG 1094
Query 1033 CCTATACTCAGACGCTAAGATGGAAACACGAAGGCCCTTCAGATTCTTTTAAGGCACTTA 1092
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1095 CCTATAATCAGACGCTAAGATGGAAACATGAAGGCCCTTCAGATTCTTTTAAGGCACTTA 1154
Query 1093 TTGATATGGCTGATGTACACTCTTCTTGTCGTCTCTGCATCTTTGTGGCTACAAGGATTC 1152
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TTGATATGGCTGCTGTACACTCTTCTTGTCGTCTCTGCATCTTTGTGGCTACAAGGATTC 1214
Query 1153 GTGAGCAAGAAGAGAAGAGCCCTGAGTTTAAGAGACGACCCTGCAAATGCAGCAGGGGCT 1212
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1215 GTGAGCAAGAAGAGAAGAGCCCTGAGTTTAAGAGACGACCCTGCAAATGCACCAGAGGCT 1274
Query 1213 CACAGACAGTTTATCATTTGTATGTTAGAGAAAGAGGACGGTTTGACATGGAATCCATCT 1272
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 CAGAGACAGTTTATCATTTGTATGTTAGAGAAAGAGGACGGTTTGACATGGAATCCATCT 1334
Query 1273 TCTTGAACGATGGAAATCTGACTCCGGAAGCTCTGAAATCTGCAGTTCTTGCAAAGTTCA 1332
||||||| |||||||||||||||| |||||||||| ||||||| |||||||| |||||||
Sbjct 1335 TCTTGAAGGATGGAAATCTGACTCTGGAAGCTCTGGAATCTGCGGTTCTTGCGAAGTTCA 1394
Query 1333 AGTCTCTGAGACATGAACCGATATGGAAGAAGGAAAGACCCGCGACCTTAAGAGGAGATG 1392
|||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 1395 TGTCTCTGAGATATGAACCAATATGGAAGAAGGAAAGACCCGCGAGCTTAAGAGGAGACG 1454
Query 1393 GTGAGCTTAGAGTACATGGGATATATCCGCTTGGTCTGACTCAAAGACAAGCCCTTTACA 1452
| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1455 GCAAGCTTAGAGTACATGGGATATATCCTATTGGTCTGACTCAAAGACAAGCTCTTTACA 1514
Query 1453 ACTTCAAATTCGAAGGAAATTCAAGTCTCAGTACTCACATACAGAGAAACCCTTGTTCCA 1512
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1515 ACTTCAAATTCGAAGGAAATTCAAGTCTCAGTACTCACATACAGAGAAACCCTTGTCCCA 1574
Query 1513 AATTCGAAGTTGTCTTTGTCTAAATTCTAGAAGAAAACCAAAGTTTACTTTGTGATGCAC 1572
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1575 AATTCGAAGTTGTCTTTGTCTAAATTCTAGAAGAAAACCAAAGTTTATTTTGTGATACAT 1634
Query 1573 GCTTTGAATGTAGTTTGTTTTAGGCAGGA-TTAAGGAACGAGTACATATAAAAATAAAAA 1631
||||||| |||||||||| |||||||||| |||||||| | ||||||||||||||||||
Sbjct 1635 GCTTTGAGTGTAGTTTGTCTTAGGCAGGAATTAAGGAATGTGTACATATAAAAATAAAAG 1694
Query 1632 CAGATTTTGCTTCTCTTATTGGGT--T-CAA-G-A-ATA-GTT----TG-A-T--GA-AA 1675
|| |||||||| ||||||||||| | ||| | | ||| ||| || | | || ||
Sbjct 1695 -AGTTTTTGCTTGTCTTATTGGGTACTACAATGCACATATGTTCAAGTGTAGTTTGATAA 1753
Query 1676 --CACAAAATGGCTAATTAAACATTCTCAG-TTCAGCTTTAACAGATTTACAGATACTGC 1732
||||||||| | | || ||||||||| || ||||||||||||||||||||||||||
Sbjct 1754 AACACAAAATGAC-AC--AAGCATTCTCAGATT-AGCTTTAACAGATTTACAGATACTGC 1809
> AT1G49710.1 | Symbols: FUT12, ATFUT12, FUCTB, FUCT2 | fucosyltransferase
12 | chr1:18391338-18393947 REVERSE LENGTH=2004
Length=2004
Score = 1059 bits (573), Expect = 0.0
Identities = 1041/1262 (82%), Gaps = 51/1262 (4%)
Strand=Plus/Plus
Query 300 TGCCAGGAGTGGTTAGA-GAGAGTGGACTCAGTGACTTATTCTAGAGATTTCAGTAAAAA 358
||| |||||||||| || ||||| || ||||| ||||| ||||||||||| | |||| |
Sbjct 482 TGCGAGGAGTGGTT-GATGAGAGAAGATTCAGTTACTTACTCTAGAGATTTTACTAAAGA 540
Query 359 TCCAATCTTTATCGCTGGTAGT-AACAAGGAC-TTCGAATCGTGTTCTGTTGATTGT--G 414
|||||| |||||| ||||| || || |||||| ||| ||| ||||||||| ||||||
Sbjct 541 TCCAATTTTTATCTCTGGTGGTGAA-AAGGACTTTC-AATGGTGTTCTGTGGATTGTACA 598
Query 415 TTATGG-GATTCAGTTCAGATAAGAA-ACCCGATGCGGCGTTTGGATTAAGTCATCAACC 472
|| ||| || | ||||||| || || ||| ||||| |||||||||||| |||| ||||
Sbjct 599 TT-TGGAGA-T-AGTTCAGGGAA-AACACCAGATGCTGCGTTTGGATTAGGTCAGAAACC 654
Query 473 TGGAACACTCAGTATAATCCGTTCCATGGAATCGGCACAGTACTATCAAGAGAACAATCT 532
|||||| || |||||||| |||||||||||||| |||||||| |||| ||| || ||||
Sbjct 655 TGGAACTCTTAGTATAATACGTTCCATGGAATCAGCACAGTATTATCCAGAAAATGATCT 714
Query 533 TGCTCAAGCACGACGGAGGGGTTATGATGTTGTGATGACAACTAGTCTGTCATCAGATGT 592
||| || ||||||||||| ||||||||| | |||||||| |||||||| |||||||||||
Sbjct 715 TGCACAGGCACGACGGAGAGGTTATGATATAGTGATGACCACTAGTCTATCATCAGATGT 774
Query 593 TCCTGTTGGGTATTTTTCATGGGCGGAATATGATATTATGGCTCCAGTGCATCCAAAGAC 652
||||||||| |||||||| |||||||| |||||||||||| |||| || || ||||| ||
Sbjct 775 TCCTGTTGGATATTTTTCGTGGGCGGAGTATGATATTATGTCTCCGGTACAGCCAAAAAC 834
Query 653 CGAGAAAGCTCTTGCTGCTGCTTTTATATCCAATTGTGCG-GCTCGGAATTTCCGCCTGC 711
|||| |||| |||| ||||||||||| || ||||||| | ||||||||||| || || |
Sbjct 835 TGAGAGAGCTATTGCAGCTGCTTTTATTTCTAATTGTG-GTGCTCGGAATTTTCGTCTAC 893
Query 712 AAGCTCTTGAAGCCTTAATGGAGGCGAATGTTAAGATTGATTCTTATGGTGGTTGTCACC 771
|||| ||||| || || ||| | | || |||||||||||||||||||||||||||| |
Sbjct 894 AAGCACTTGAGGCATTGATGAAAACTAACATTAAGATTGATTCTTATGGTGGTTGTCATC 953
Query 772 GGAATCGGGATGGGAGTGTGGAGAAGGTTGAAGCTCTTAAGC-ACTACAAATTCAGTCTA 830
| || |||||||||| || || ||||||||||||||||||| | |||||||||||| |
Sbjct 954 GAAACCGGGATGGGAAAGTTGACAAGGTTGAAGCTCTTAAGCGA-TACAAATTCAGTTTG 1012
Query 831 GCTTTTGAGAACACCAACGAGGAGGACTACGTCACAGAGAAGTTCTTCCAAT-CTCTAGT 889
||||||||||| || |||||||| || || ||||| ||||||||||| |||| || ||||
Sbjct 1013 GCTTTTGAGAATACTAACGAGGAAGATTATGTCACCGAGAAGTTCTTTCAATCCT-TAGT 1071
Query 890 TGCTGGATCTGTCCCTGTGGTTGTTGGAGCTCCAAATATAGAAGAATTTGCACCTTCTCC 949
|||||| || ||||| ||||| ||||| |||||||||||||||||||||| ||| || |
Sbjct 1072 TGCTGGGTCCGTCCCCGTGGTAGTTGGTCCTCCAAATATAGAAGAATTTGCGCCTGCTTC 1131
Query 950 TGACTCATTCCTTCACATTAAG-CAGATGGATGATGTCA-AGGCAGTTGCAAAGAAAATG 1007
||||||||||||||||||||| | ||||| ||||| | || |||||||||||| ||||
Sbjct 1132 GGACTCATTCCTTCACATTAAGACT-ATGGAAGATGT-AGAGCCAGTTGCAAAGAGAATG 1189
Query 1008 AAGTATCTTGCGGATAACCCTGAC-GCCTATACTCAGACGCTAAGATGGAAACACGAAGG 1066
|||||||| || | |||||||| | || |||| |||||| |||||||||||| |||| ||
Sbjct 1190 AAGTATCTCGCAGCTAACCCTG-CTGCTTATAATCAGACACTAAGATGGAAATACGAGGG 1248
Query 1067 CCCTTCAGATTCTTTTAAGGCACTTATTGATATGGCTGATGTACACTCTTCTTGTCGTCT 1126
|||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||
Sbjct 1249 TCCTTCAGATTCTTTCAAGGCACTTGTTGATATGGCTGCTGTACACTCTTCTTGCCGTCT 1308
Query 1127 CTGCATCTTTG-TGGCTACAAGGATTCGTGAGCAAGAAGAG-AAGAGCCCTGAGTTT-AA 1183
|||||| ||| |||| || ||| | || || ||||||||| || |||||| | ||| ||
Sbjct 1309 CTGCAT-TTTCCTGGCCACGAGGGTCCGAGAACAAGAAGAGGAA-AGCCCTAA-TTTCAA 1365
Query 1184 GAGACGACCCTGCAAATGCAGCAGGGGCTCA-CAGACA--GTTTATCAT-TTGTATGTTA 1239
|| |||||| |||||||| |||||||| | |||||| ||||||||| || | |||||
Sbjct 1366 GAAACGACCGTGCAAATGTAGCAGGGGAGGATCAGACACAGTTTATCATGTTTT-TGTTA 1424
Query 1240 GAGAAAGAGGACGGTTTGACATGGAATCCA-TCTTCTTGAACGATGGAAA-TCTGACTCC 1297
|||||||||| |||||||| |||||||| | |||| |||| | | ||| | ||||||
Sbjct 1425 GAGAAAGAGGCCGGTTTGAAATGGAATC-AGTCTTTTTGAGGGGTA-AAAGTGTGACTCA 1482
Query 1298 GGAAGCTCT-GAAATCTGCAGTTCTTGCAAAGTTCAAGTCTCTGAGACATGAACC-GATA 1355
||||||||| ||| ||||||||||| || |||||||||||| | | |||||| | | |
Sbjct 1483 GGAAGCTCTAGAA-TCTGCAGTTCTCGCCAAGTTCAAGTCTTTAAAACATGAGGCAG-TG 1540
Query 1356 TGGAAGAAGGAAAGACCCGCGAC-CTTAAGAGGAGATGGTGAGCTTAGAGTACATGGGAT 1414
|||||||||||||| || | || ||||| |||||| ||||||| | ||||| ||||
Sbjct 1541 TGGAAGAAGGAAAGGCCTG-GAAACTTAAAAGGAGACAAAGAGCTTAAAATACATCGGAT 1599
Query 1415 ATATCCGCTTGGTCTGACTCAAAGACAAGCCCTT-TACAACTTCAAATTCGAAGGAAATT 1473
|| |||||||| || || ||| |||| || || ||||||||||||||||| |||||||
Sbjct 1600 TTACCCGCTTGGCCTAACGCAACGACAGGCT-TTGTACAACTTCAAATTCGAGGGAAATT 1658
Query 1474 CAAGTCTCAGTACTCACATACAGAGA-AACCCTTGTTCCAAATTCGAAGTTGTCTTTGTC 1532
| ||||| |||| |||||| || | | ||||||||| | ||||| || |||||||| |||
Sbjct 1659 CGAGTCTAAGTAGTCACATTCAAA-ACAACCCTTGTGCTAAATTTGAGGTTGTCTTCGTC 1717
Query 1533 TA 1534
||
Sbjct 1718 TA 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85642129770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5