BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479444
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19290.3 | Symbols: ABF4 | ABRE binding factor 4 | chr3:6687... 2606 0.0
> AT3G19290.3 | Symbols: ABF4 | ABRE binding factor 4 | chr3:6687140-6690123
FORWARD LENGTH=1805
Length=1805
Score = 2606 bits (1411), Expect = 0.0
Identities = 1696/1825 (93%), Gaps = 54/1825 (3%)
Strand=Plus/Plus
Query 1 GCTCGTGTCGAGGCGGCAGCAACACACTTGTCGTCTCTCCCTGTAACTTCTCTGGAGTTT 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 GCTCGTGTCGAGGCGGCAGCAACACACTTGTCGTCTCTCCCTGTAGCTTCTCTGGAGTTT 60
Query 61 TCGCAGTCACGAATCTTGTTTTGAAGAAATTTAATTTGGTAAGAAGGGTTTTAGGGCTTG 120
||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||
Sbjct 61 TCGCAGTCACGAATCTTGTTTTGAAGAAA-TTAATTT-G-AACAAGGGTTTTAGGGCTTG 117
Query 121 GATGCTTTGTTTTCATTGAAGAAGAAGTACAAGGAGTGAATACAAGGATTATGGGAACTC 180
|||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 118 GATGCTTTGTTTTCATTGAAAAAGAAGTAGAAGGAGTGTATACAAGGATTATGGGAACTC 177
Query 181 ACATCAATTTCAACAACTTAGGAGGTGGTGGTCATCCTGGAGGGGAAGGGAGTAGTAATC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 178 ACATCAATTTCAACAACTTAGGAGGTGGTGGTCATCCTGGAGGGGAAGGGAGTAGTAACC 237
Query 241 AGATGAAGCCAACGGGTAGTGTTGTCATGCCCTTGGCGAGGCAGTCCTCGGTCTATTCCC 300
|||||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||
Sbjct 238 AGATGAAGCCAACGGGTA--G-TGTCATGCCCTTGGCTAGGCAGTCCTCGGTCTACTCCC 294
Query 301 TTACCTTTGATGAGTTACAGAACACACTAGGTGGACCGGGAAAAGATTTCGGGTCGATGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TTACCTTTGATGAGTTACAGAACACACTAGGTGGACCGGGAAAAGATTTCGGGTCGATGA 354
Query 361 ACATGGATGAACTCCTGAAGAGCATATGGACTGCTGAGGAAGCTCAGGGCATGGCCATGA 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 355 ACATGGATGAACTCCTGAAGAGCATATGGACTGCTGAGGAAGCTCAGGCCATGGCCATGA 414
Query 421 CTTCTTCGTCAGCTGCTACAGCGGCAGCGCAACCCGGTGCTGGTAT------CCCTGGTG 474
||||| || ||||||||||||||| ||||||||| ||||||||||| ||| ||||
Sbjct 415 CTTCTGCGCCAGCTGCTACAGCGGTAGCGCAACCTGGTGCTGGTATCCCACCCCCAGGTG 474
Query 475 GGAATCTCCAGAGGCAAGGCTCGTTGACGTTGCCTAGAACGATTAGTCAGAAGACTGTTG 534
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 475 GGAATCTCCAGAGGCAAGGTTCGTTGACGTTGCCTAGAACAATTAGTCAGAAGACTGTTG 534
Query 535 ATGAGGTGTGGAAATGTTTGATCACCAAAGATGGTAATATGGGAA-GTAGCAGCGGAGGC 593
|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 535 ATGAGGTGTGGAAATGTTTGATCACCAAGGATGGTAATAT-GGAAGGTAGCAGCGGAGGC 593
Query 594 GGTGGTGAGTCGAATGCGCTTCCTGGGAGGCAACAGACTTTAGGGGAAATGACACTTGAA 653
|||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 594 GGTGGTGAGTCGAATGTGCCTCCTGGAAGGCAACAGACTTTAGGGGAAATGACACTTGAA 653
Query 654 GAGTTTCTGTTCCGTGCTGGGGTTGTAAGAGAAGATAACTGTGCTCAACAGATGGGTCAG 713
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 654 GAATTTCTGTTCCGTGCTGGGGTTGTAAGAGAAGATAACTGTGTTCAACAGATGGGTCAG 713
Query 714 GTCAATGGAAATAATAACAACAACGGGTTTTATGGTAACGGCAATGCTGCTGGCGGCTTT 773
||||| ||||| ||| ||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 714 GTCAACGGAAACAAT---AACAATGGGTTTTATGGTAACAGCACTGCTGCTGGCGGCTTA 770
Query 774 GGTTTTGGATTTGATCAGCCAAATCAAGACAGCATATCATTCAATGGTAATAATGATTCT 833
||||||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct 771 GGTTTTGGATTTGGTCAGCCAAATCAAAACAGCATAACATTCAATGGTACTAATGATTCT 830
Query 834 ATGATCATGAATCAGCCATCTGGTTTAGGGCTCAAAGTGGGTGGaacaatgcagcagcag 893
|||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 831 ATGATCTTGAATCAGCCACCTGGTTTAGGGCTCAAAATGGGTGGAACAATGCAGCAGCAA 890
Query 894 caacaacaacaacagttattgcagcagcagcaacaacagcagttgcagcagctgaatcag 953
||||||||||| ||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 891 CAACAACAACAGCAG---TTGCTTCAGCAGCAACAACAGCAGATGCAGCAGCTGAATCAG 947
Query 954 cctcatccgcagcagcGGCTGCCTCAAATCATTTTTCCTAAACAAGCAAACGTAGCATTT 1013
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 948 CCTCATCCACAGCAGCGGCTGCCTCAAACCATTTTTCCTAAACAAGCAAACGTAGCATTT 1007
Query 1014 TCTTCGCCTGTGAATATAGTCAACAAGGGTTTTGCTGGGGCTGCAAATAATTCCATCAAC 1073
||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1008 TCTGCGCCTGTGAATATAACCAACAAGGGTTTTGCTGGGGCTGCAAATAATTCTATCAAC 1067
Query 1074 AATAATAATGGATTAGCTAATTTCGGAGGAACTGGGGTTACTGTTGCAGCAACTTCTCCA 1133
||||||||||||||||||| || ||||||||| ||||| |||||||||||||||||||||
Sbjct 1068 AATAATAATGGATTAGCTAGTTACGGAGGAACCGGGGTCACTGTTGCAGCAACTTCTCCA 1127
Query 1134 GGGACAAGCAGCGCAGAAAATAATTCTTTATCACCAGTTCCATATGTGCTTAATCGAGGA 1193
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1128 GGAACAAGCAGCGCAGAAAATAATTCTTTATCACCAGTTCCGTATGTGCTTAATCGAGGA 1187
Query 1194 CGAAGAAGCAATACGGGGCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAG 1253
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 CGAAGAAGCAATACAGGTCTAGAGAAGGTTATCGAGAGGAGGCAAAGGAGAATGATCAAG 1247
Query 1254 AACCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGGCTTATACATTGGAACTGGAA 1313
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AATCGGGAATCAGCTGCTAGATCAAGAGCTCGAAAGCAGGCTTATACATTGGAACTGGAA 1307
Query 1314 GCTGAAATTGAAAAGCTCAAGAAAACGAATCAAGAACTGCAGAAAAAACAGGCTGAAATG 1373
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GCCGAAATTGAAAAGCTCAAGAAAACGAATCAAGAACTGCAGAAAAAACAGGCTGAAATG 1367
Query 1374 GTGGAGATGCAGAAGAATGAGC---TGAAGGAATCGTCGAAGCGACCATGGGGCAGCAAA 1430
||||| |||||||||||||||| |||| ||| ||||||||||||| ||||||||||||
Sbjct 1368 GTGGAAATGCAGAAGAATGAGCAGCTGAAAGAAACGTCGAAGCGACCGTGGGGCAGCAAA 1427
Query 1431 AGACAATGCTTGAGAAGGACATTAACTGGTCCATGGTGAAGGATGAAGCAACAAGAACGG 1490
|| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1428 AGGCAATGCTTGAGAAGGACATTAACCGGACCATGGTGAAGGATGAAGCAACAAGAACGG 1487
Query 1491 -----CC----T---AGCTTGGGACTAATGTAATAGGAGTTAGTGCTACCTGTACAGGAG 1538
|| | ||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1488 ATGAACCAGACTCCTAGCTTGGGATTAATGTAATAGGA-T-AGTGCTACCTGTACAGGAG 1545
Query 1539 ATTAAGAGAAATTGAGTGAAAAATCTAGGTTACAGAGTAGGAGAGAGTTTTCATTATGAA 1598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1546 ATTAAGAGAAATTGAGTGAAAGATCTAGGTTACAGAGTAGGAGAGAGTTTTCATTATGAA 1605
Query 1599 TAAATGACAGTTTGTGCCCTGACCTTTATTAGTCTAGGTT-AGATTATCCTCTGTTTTTG 1657
||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||||| |||
Sbjct 1606 TAAATGACATTTTGTGCCCTGACCTTTGTTAGTTTAGGTTTAGATTATCCTCTGTTATTG 1665
Query 1658 --T----GT--TTTCTGGTTGTTGGGGTTTTTAAAAGACATACAGTAGTTGTTTATATAT 1709
| || |||||||||||| |||||| ||||||||||| || | ||||||||||
Sbjct 1666 ACTTATTGTGCTTTCTGGTTGTTAGGGTTTCTAAAAGACATA--GT--T-GTTTATATAT 1720
Query 1710 ATGTCTGACTTTGTATTACGGATTTGGTTCTCTTATGTCATTAAGTTGGGTTTAACCATT 1769
||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| |||||
Sbjct 1721 ATGTCTGACTTTGTATTCCGGATTTGGTTCTCTTGTGTCATTAACTTGGGTTTAGCCATT 1780
Query 1770 A---CTTAAGAGTGGCAACGAAATC 1791
| |||||||||||||||||||||
Sbjct 1781 ATTACTTAAGAGTGGCAACGAAATC 1805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5