BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479445
Length=2140
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19300.1 | Symbols: | Protein kinase superfamily protein | ... 3408 0.0
> AT3G19300.1 | Symbols: | Protein kinase superfamily protein
| chr3:6690118-6693284 REVERSE LENGTH=2190
Length=2190
Score = 3408 bits (1845), Expect = 0.0
Identities = 2045/2143 (95%), Gaps = 8/2143 (0%)
Strand=Plus/Plus
Query 1 ATTCTCTTCAGGCGACTTCTCATTGACCTCTCCTAACGTCTCTCTCTCTTCTTTTGGCCA 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 17 ATTCTCTTCAGGCGACTTCTCATTGACCTCTCCTAACGACTCTCTCTGTTC-TTTGGCCA 75
Query 61 TGGTGGTGGTTTATAAGCAAGCTCTCTTGCTCGCATTGTTCGCATTTCTTGGATTCCAGT 120
||||| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 76 TGGTGTTGGTTTATAATCAAGCTCTCTTGCTCGCATTCTTCGCATTGCTTGGATTCCAGT 135
Query 121 ACTTGCCTTTACTCTCCGAAGCAGGTTGTCCATTGGACTTTACTTCATCTAACTTCACTC 180
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ACTTTCCTTTACTCACCGAAGCAGGTTGTCCATTGGACTTTACTTCATCTAACTTCACTC 195
Query 181 TAGTGGCTTCCGTGTGCTCGAACAATACCGATAGAGCTAGATGCTGCCGCTACATGAATG 240
||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||
Sbjct 196 TAGTGGCTTCCGTATGCTCGAACAACACCGAGAGAGCTAAATGCTGCCGCTACATGAATG 255
Query 241 CTTTCGTTGCAGTATCTGTCGCCCGCTATGCGAACTACACAGCTGATCTTGGAGTTACAT 300
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 256 CTTTCGTTGCAATATCTGTCGCCCGCTATGCAAACTACACAGCTGATCTTGGAGTTACAT 315
Query 301 CAGATTT-ATCTGAAACCTGCATTACTACTATCTCTAGAACCATGGAGCTTTATGGAATC 359
||||||| | |||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 316 CAGATTTGA-CTGAAATCTGTATCACTACTATCTCTAGAACCATGGAGCTTTATGGAATC 374
Query 360 CCAAGAAATGCTACCATCTTCTGTGGATTAGGGACCAAGATTCTTGTTAACTACGATTGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 375 CCAAGAAATGCTACCATCTTCTGTGGATTAGGGACCAAGATTCTTGTTAACTATGATTGT 434
Query 420 GAGGGTCTGGCCACTGTACCGCCGATGCTTCGTTCCACAAGTTTTGGAGATGTTTCTAGA 479
||||||||| | ||||||||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 435 GAGGGTCTGACTACTGTACCGCCAATGCTTCATTCCACAAGTTTTGGAGATGTTTCCAGA 494
Query 480 AACTGCAAACTTCCGCTTCCACCGGGTGATCAATGCAGGAATTGCTTGAATTCCAGTATC 539
||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 495 AACTGCAAACTCCCGCTTCCTCCGGGTGATCAATGCAGGAATTGTTTGAATTCCAGTATC 554
Query 540 ACCTACCTTCGTAGCCTCGTTGGTGCAGATAATAGCATCAAACTGAGTACTTGTCGTGAT 599
| ||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 555 AGCTACCTTAGGAGCCTCGTTGGTGCTGATAATAGCATCAAACTGAGTACTTGTCGTGAT 614
Query 600 GCAACTTATGCTGTGTTAGCAAGCCGGGTTGACAATTCATCTGCTCTTGAACTCGCTAGC 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 615 GCAACTTATGCTGTGTTAGCAAGCCGGGTTGACAATTCATCGGCTCTTGAACTAGCTAGC 674
Query 660 TGCTTCTTTAATGTGCCTGAGCTTAGCCCCGCTTCAGGTTCGTCTCCATCATCGCTGAGC 719
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 675 TGCTTCTTTAATGTGCCTGAGCTTAGCCCCACTCCAGGTTCGTCTCCATCATCGCTGAGT 734
Query 720 CCAGAAGCTTCTCCTCCAGTGTTAGCTGATAGTCCAAGCAGCGACAATCTTGTTTTGTCT 779
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 735 CCAGAAGCTTCTCCTCCAGTGTTAGCTGATAGTCCAAGCAGCGATAATCTTGTTTTGTCT 794
Query 780 CCATTAAAAAGTCACCATCGATATCACTTGACAATGGTTCCGACTATTGGGATCGCTGTT 839
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 795 CCATTAAAAAGTCACCATCCATATCACTTGACAATGGTTCCGACTATTGGGATTGCTGTC 854
Query 840 TCAGCTGTTGCTCTTGTGATGCTCGTATTCCTAATAGTTCTTATCCAAAGaaaaaaaCGA 899
||| | |||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 855 ACAGTTTTTGCTCTTGTGATGGTTGTAGTCCTAATAGTTCTTATCCAAAGAAAAAAACGA 914
Query 900 GAACTTGATGACTCCAAGGGCATGGATTGTAATCTTAA-AAGGACATCTCCTTCTCCCCA 958
|||||||||||||||||| |||| | |||||||| ||| ||||||||||||||||||||
Sbjct 915 GAACTTGATGACTCCAAGAGCATCGCTTGTAATC-TAACAAGGACATCTCCTTCTCCCCG 973
Query 959 CCCAAGGTCGATGATTCATGAAGGTGATTCGTCTGGTTTTCGGAAATTCAGCTACAAGGA 1018
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 974 CCCAAGGTCGATGATTCATGAAGGTAATTCGTTTGGTTTTCGGAAATTCAGCTACAAGGA 1033
Query 1019 GATAAGGAAAGCAACTGAAGATTTCAACACAGTGATTGGCCGTGGGGGATTTGGGACTGT 1078
|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1034 GATAAGGAAAGCAACTGAAGATTTCAACGCGGTGATTGGCCGTGGGGGCTTTGGGACTGT 1093
Query 1079 TTACAAAGCTGAGTTCAGTAATGGGTTGGTTGCAGCTGTAAAAAGGATGAACAAGAGCTC 1138
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1094 TTACAAAGCTGAGTTCAGTAATGGGTTGGTTGCAGCTGTAAAAAAGATGAACAAGAGCTC 1153
Query 1139 TGAACAAGCAGAAGATGAATTTTGCAGAGAGATAGAGCTTCTCGCCAGGCTGCATCACCG 1198
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TGAACAAGCTGAAGATGAATTTTGCAGAGAGATAGAGCTTCTCGCCAGGCTGCATCACCG 1213
Query 1199 CCACCTAGTTGCTTTGAAAGGGTTTTGTAACAAGAAGAACGAGAGGTTCCTTGTCTACGA 1258
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1214 CCACCTAGTTGCTTTGAAAGGGTTTTGTAATAAGAAGAACGAGAGGTTCCTTGTCTACGA 1273
Query 1259 GTATATGGAAAATGGGAGCCTGAAGGATCATCTACATTCCACGGTAAAACCTCCACTTAG 1318
|||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||
Sbjct 1274 GTATATGGAAAATGGGAGCCTGAAGGATCATCTACACTCCACGGAAAAATCTCCACTAAG 1333
Query 1319 TTGGGAAACAAGGATGAAAATCGCAATCGATGTGGCTAATGCTCTGGAATACCTTCATTT 1378
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1334 TTGGGAATCAAGGATGAAAATCGCAATTGATGTGGCTAATGCTCTGGAATACCTTCACTT 1393
Query 1379 CTACTGTGACCCTCCTCTCTGTCACAGAGACATTAAGTCAGGCAACATATTACTCGACGA 1438
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1394 CTACTGTGACCCTCCCCTCTGTCACAGAGACATTAAGTCAAGCAATATATTACTCGACGA 1453
Query 1439 GAACTTTGTTGCTAAGCTTGCAGATTTTGGCCTTGCACATGCTTCTAGAGATGGCTCCAT 1498
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 GCACTTTGTTGCTAAGCTTGCAGATTTTGGCCTTGCACATGCTTCTAGAGATGGCTCCAT 1513
Query 1499 TTGTTTTGAACCTGTTAATACCGATATCCGTGGAACTCCAGGCTATGTAGATCCAGAGTA 1558
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1514 TTGTTTTGAACCTGTTAATACTGATATCCGCGGAACTCCAGGCTATGTAGATCCAGAGTA 1573
Query 1559 CGTTGTAACACAAGAACTGACAGAGAAAAGCGATGTGTACAGCTACGGAGTGGTGTTGCT 1618
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1574 CGTTGTAACACATGAACTAACAGAGAAAAGCGACGTGTACAGCTACGGAGTGGTGTTGCT 1633
Query 1619 AGAGATCATAACTGGGAAAAGAGCCGTTGATGAAGGTAGGAACCTGGTAGAATTGTGTCA 1678
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||
Sbjct 1634 AGAGATCATAACTGGGAAAAGAGCGGTTGATGAAGGTAGGAACCTGGTAGAACTGTCTCA 1693
Query 1679 GCCTTTACTGGTATCAGAATCAAGACGCATAGATCTGGTGGATCCGAGAATCAACGACTG 1738
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1694 GCCTTTGCTGGTATCAGAATCAAGACGCATAGATCTGGTGGATCCGAGAATCAAAGACTG 1753
Query 1739 CATAGATGGAGAACAGCTTGAAACAGTAGTGGCAGTTGTAAGATGGTGCACAGAGAAAGA 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 CATAGATGGAGAACAGCTTGAAACAGTAGTGGCAGTTGTAAGATGGTGCACAGAGAAAGA 1813
Query 1799 AGGCGTGGCTAGGCCATCAATCAAGCAAGTCCTGAGGCTGTTGTACGAAAGCTGTGATCC 1858
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1814 AGGCGTGGCTAGGCCATCAATCAAGCAAGTTCTGAGGCTGTTGTACGAAAGCTGTGATCC 1873
Query 1859 ATTGCATCTCGGGCTTGCAATGGCGGTCGAGGAGAACAAAGGACGGTCACTGAGAGGTGA 1918
||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1874 GTTGCATCTCGGGCTTGCAATGGCAGTTGAAGAGAACAAAGGACGGTCACTGAGAGGTGA 1933
Query 1919 CTCAGTGTTCCAAAGTGGAGACATCCGTGGCTTGGCTTCTTCCTCTAGTACTACTTCAAG 1978
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1934 CTCAGGGTTCCAAAGTGGAGACATCCGTGGCTTGGCTTCTTCCTCTAGTACTACTTCAAG 1993
Query 1979 GTCGCATTGTAGCCGGAGTTTTCTGCTTGAGACTGGTTCCCCTCACTCTCCACCAAATGG 2038
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1994 GTCGCATTGTAGCCGGAGTTTTCTGCTTGAGACTGGCTCCCCTCACTCTCCACCAAATGG 2053
Query 2039 TCTCTCTTTTTGAGTGAGGAGAGACAA-TTAGTCACAttttttttCTAGAAATTTGTCAC 2097
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 2054 TCTCTCTTTTTGAGTGAGCAGAGACAAATTAGTCACATTTTTT--CTAGAAATTTGTCAC 2111
Query 2098 TTGGGATCATCCAAACTGTTTTCTAATTGCAATTTTGAAAGAT 2140
|| ||||||||| |||||||||||||||||| |||||||||||
Sbjct 2112 TTAGGATCATCCTAACTGTTTTCTAATTGCAGTTTTGAAAGAT 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106123952130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5