BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479446
Length=1315
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19310.1 | Symbols: | PLC-like phosphodiesterases superfami... 2093 0.0
> AT3G19310.1 | Symbols: | PLC-like phosphodiesterases superfamily
protein | chr3:6694196-6696214 FORWARD LENGTH=1327
Length=1327
Score = 2093 bits (1133), Expect = 0.0
Identities = 1258/1319 (95%), Gaps = 6/1319 (0%)
Strand=Plus/Plus
Query 1 CAAAATCTTTGGGTTTTAATTCTTTCAAAAAAGT-TTTATGGGATTTTGTTGCGAGAAAG 59
||||||||||||||||| ||||||| ||| | |||||||||||||| ||| ||||||
Sbjct 1 CAAAATCTTTGGGTTTTTATTCTTT--TAAACTTCTTTATGGGATTTTGGTGCAAGAAAG 58
Query 60 AAGACAATGTTTCAGAGTTTCACCTTCTTTCTAACAGCTCTTCTCATTCCATGT-TT-T- 116
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| || |
Sbjct 59 AAGAAAATGTTTCAGAGATTCACCTTCTTTCTAACAGCTCTTCTCATTCCATGTATTCTA 118
Query 117 CTTATCCTTAGCCCTTCATGTGCCCTCAAGGAAGGAGAAACATGCATCGTGAGCAAGAAT 176
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTATCCTTAGCCCTTCATATGCCCTCAAGGAAGGAGAAACATGCATCGTGAGCAAGAAT 178
Query 177 TGTGATCGGGGACTACACTGTGAATCGTGTCTCGCCAGCGATAGTTTCCGACCTAGATGC 236
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TGTGATCGGGGATTACACTGTGAATCGTGTCTCGCCAGCGATAGTTTCCGACCTAGATGC 238
Query 237 TCTCGAATGCAACCCATTAACCCCACCTCCAAGGTAAAAGGTTTGCCTTACAACAAGTAC 296
|| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 239 TCCCGAATGCAACCCATTAACCCGACCACCAAGGTAAAAGGGTTGCCTTACAACAAGTAC 298
Query 297 TCGTGGTTAACAACCCACAATTCATTTGCTCGAATAGGTGCAAAATCAGGCACTGGCTCT 356
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 TCATGGTTAACAACCCACAATTCATTTGCTCGAATGGGTGCAAAATCAGGCACTGGCTCT 358
Query 357 ATGATTCTTGCACCTTCCAACCAACAAGATTCAATCACAAGCCAACTCCTTAATGGTGTT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGATTCTTGCACCTTCCAACCAACAAGATTCAATCACAAGCCAACTCCTTAATGGTGTT 418
Query 417 AGAGGGTTTATGCTTGACATGTACGACTTCCAAAATGATATATGGCTCTGCCATTCTTAC 476
|||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 419 AGAGGGTTTATGCTTGACTTGTACGACTTCCAAAACGATATATGGCTTTGCCATTCTTAC 478
Query 477 GGTGGAAATTGCTTCAATTACACCGCATTCCAACCCGCGGTTAACATTTTAAAGGAGTTT 536
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGTGGAAATTGTTTCAATTACACCGCATTCCAACCCGCGGTTAACATTTTAAAGGAGTTT 538
Query 537 CAAGTGTTTCTAGACAAGAACAAGGATGTTGTTGTGACACTTATCCTCGAGGACTATGTA 596
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 539 CAAGTGTTTCTAGACAAGAACAAGGATGTTGTTGTAACGCTTATCCTCGAGGACTATGTG 598
Query 597 AAATCTCCTAATGGTTTAACCAAAGTGTTTGATGCATCCGGATTACGAAATTTCATGTTT 656
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 599 AAATCTCCTAATGGTTTAACCAGAGTGTTTGATGCATCCGGATTACGAAACTTCATGTTT 658
Query 657 CCGGTAACAAGAATGCCTAAAAACGGAGAAGATTGGCCTACTATCGATGATATGATAAGT 716
|||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 659 CCGGTATCAAGAATGCCTAAAAACGGAGAAGATTGGCCTACTCTTGATGATATGATATGT 718
Query 717 CAGAACCAACGATTGCTTGTTTTCACGTCTAACCCTCATAAAGAAGCGTCTGAGGGAATT 776
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 719 CAGAACCAACGATTGCTTGTTTTCACGTCTAATCCTCAAAAAGAAGCGTCGGAGGGAATT 778
Query 777 GCGTTTATATGGAGATACATGATAGAGAATCAATATGGAGATGGAGGGATGAAGGCTGGA 836
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCGTTTATGTGGAGATACATGATAGAGAATCAATATGGAGATGGAGGGATGAAGGCTGGA 838
Query 837 GTTTGTACAAATAGACCGGAATCAGTTGCAATGGGAGATAGATCGAGATCACTTATTCTA 896
|| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 GTGTGTACCAATAGACCGGAATCAGTTGCAATGGGAGATAGATCAAGATCACTTATTCTA 898
Query 897 GTCAATTACTTTCCGGATACTGCAGACGTGATCGGATCTTGTAAGCAGAACTCTGCTCCT 956
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 GTCAATTATTTTCCGGATACTGCAGATGTGATCGGATCTTGTAAGCAGAACTCTGCTCCT 958
Query 957 CTTCTTGACACCATCAAAAATTGTCAAGAAGCCTCAGGACAACGCTGGCCTAACTTCATT 1016
|||||||||||| ||||||| |||||||||||||| ||| |||| |||||||||||||||
Sbjct 959 CTTCTTGACACCGTCAAAAACTGTCAAGAAGCCTCGGGAAAACGTTGGCCTAACTTCATT 1018
Query 1017 GCAGTCGATTTCTACAAGAGAAGTGATGGTGGAGGAGCTCCAAAAGCAGTGGATGTTGCA 1076
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCAGTCGATTTCTACAAGAGAAGCGATGGTGGAGGAGCTCCAAAAGCAGTGGATGTTGCA 1078
Query 1077 AACGGCCATTCAGTCTGCGGCTGTGAAGATATAGCCGCTTGTAAAGAGAACATGCCATAT 1136
||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1079 AACGGTCATGCAGTTTGCGGCTGCGAAGATATAGCCGCTTGTAAAGAGAACATGCCATAT 1138
Query 1137 GGGACGTGTGAGAAGCAAGAAGAGAAGAAACCGGAGTCAAACCTAATGATGATAGCAAAA 1196
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1139 GGGACGTGTGAGAAGCAAGAAGAGAAGAAACCGGAATCAAACCTAATGATGATAGCAAAA 1198
Query 1197 CTAACCGCGGAAGCGACTAAAGGCTATGGTCACCCATCTACCAAACCGACCCAACTTGGG 1256
|| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1199 CTTACCGCGGAAGCGACTAAAGGCTATGGCCACCCATCTACCAAACCGACCCTACTTGGG 1258
Query 1257 CTTTCTGTGTTTGTTGTAACCTTTGTCTTACTCCTCTCAACTTTTTGACTCAAATGATT 1315
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1259 CTTTCTGTGTTTGTTGTAACCTTTGTCTCACTTCTCTCAACTTTTTGACTCAAATGATT 1317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64708502505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5