BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479447
Length=1485
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19320.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2180 0.0
AT1G49750.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 699 0.0
> AT3G19320.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:6696395-6698073 REVERSE LENGTH=1482
Length=1482
Score = 2180 bits (1180), Expect = 0.0
Identities = 1387/1488 (93%), Gaps = 9/1488 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCAACTTATAATCCTTCCATTTTCTTGATTCTGTCTTTTCACTTTCTTTCAATT 60
||||| |||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCCCCAAATTATTATCCTTCCATTTTCTTGATTCTGTCTGTTCACTTTCTTTCAATT 60
Query 61 TTAGCTACCGGAAACAACCAC-ATAACTGACAGAAAATCTCTCGAAATCATCATCGGCGG 119
|||| ||||||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 61 CTAGCCACCGGAAACAACCACAACACCT-ACAGAAAATCTCTCGAAATCATCATCGGCGG 119
Query 120 TGGCAGTGAAAGCTTCAATTACAATTCTCCGGCGCCATCTCCGGAGCCAGAAGACTATCT 179
||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TGGCAGTGATAGCACCAATTACAATTCTCCTGCGCCATCTCCGGAGCCAGAAGACTATCT 179
Query 180 TCCGCCGCCTCCTCCTCGACCTCAAATACCATCACCCCTGCCTCCACCACAGCCACTTCC 239
||||| |||||||||| ||||||| ||| |||||| ||| ||||||||| |||| ||
Sbjct 180 TCCGCTGCCTCCTCCT---CCTCAAACGCCACCACCCCCGCCGCCACCACAGTCACTCCC 236
Query 240 TCCTCTATTCCCATCTCCGGAGCCTGAAAACTGTCGTCCGCCACCTTATCATCATTATCT 299
||||| || ||||||||||||||||||| ||| || ||| || ||||||||||||||| |
Sbjct 237 TCCTCCATCCCCATCTCCGGAGCCTGAACACTATCCTCCCCCTCCTTATCATCATTATAT 296
Query 300 AACACCATCTCCGCCGCCACCACGGCCACTTGCTCCTCCACTGCCACCACCACTAC-TGT 358
||||||||| || |||||||||||||||||| ||||||||| |||||| || |||| | |
Sbjct 297 AACACCATCACCACCGCCACCACGGCCACTTCCTCCTCCACCGCCACCGCCGCTACAT-T 355
Query 359 TCTCCAGCCCACTAATAAAGAACGTTTATTCAGTCATCAAGAATTTCCAGACGCTAATCG 418
|||| |||||| |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 356 TCTCAAGCCCATTAATAAAGAAAGTTTATCCAGTCATCAAGAATTTCCAGACGCTAATCG 415
Query 419 AAAATGATCCAAAGAAG-ATACTCAGAACATGGGTAGGCACCGACATTTGCGCTCAGGAC 477
|| ||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 416 AAGATGATCCAAAG-AGCATACTTAAAACATGGGTAGGCACCGACATTTGCGCTCAGGAC 474
Query 478 AAATATATAGGACTAGAGTGCGCCAAGTTCCCGGGAACAAACGACCTCGCACTTGCCAGC 537
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 475 AAATACATAGGACTCGAGTGCGCCAAGTTACCGGGAACAAACGACCTCGCACTTGCCAGC 534
Query 538 ATTCAGTTCAACAACTTTAACTTGGGAGGCAAGAAACTCCGCCTAGATAACTTCCTTAAC 597
|||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 535 ATTCAGTTCAACAATTTTAACTTGGGTGGCAAGAAACTCCGGCTAGATAACTTCCTCAAC 594
Query 598 AAGTTAGAAGAAGTCACCATCTTCCACGCAAATAGTAACAGTTTCGTGGGCTCTGTTCCA 657
||||||||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||
Sbjct 595 AAGTTAGAAGAAGTCACCATCTTTCACGCAAACAGTAACAATTTTGTGGGCTCTGTTCCA 654
Query 658 AAATTCAGCAACTTGAAGTACCTTTTCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGA 717
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AACTTCAGCAAATTGAAGTACCTTTTCGAGCTTGATCTCAGCAACAATAAGCTCTCTGGA 714
Query 718 GAGTTCCCAAGCTCTGTACTAAAAGCAACAAACCTAACGTTTCTCGATCTCAGATTCAAT 777
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 715 GAGTTCCCAAGCTCTGTGTTAAAAGCAACGAACCTCACGTTTCTCGATCTCAGATTCAAT 774
Query 778 TCTTTCTCCGGTTCTGTGCCTCCTCATGTTTTTAATCTCGACCTGGACGTATTGTTCATC 837
||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||||
Sbjct 775 TCTTTCTCCGGTTCTGTCCCTCCTCAGGTTTTCAATCTAGACCTCGACGTATTGTTCATC 834
Query 838 AACAACAACAATCTTGTTCAGAGACTCCCTGAGAATCTCGGATCCATCACTGCTCTTTAC 897
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 835 AACAACAACAATCTTGTTCAGAGACTCCCTGAAAATCTTGGATCGATCACCGCTCTTTAC 894
Query 898 CTCACATTCGCTAACAACAGATTCACAGGTCCTATTCCGGGAAGCATTGGTGACATCAAG 957
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CTCACATTCGCTAATAACAGATTCACAGGTCCTATTCCGGGAAGCATTGGTGACATCAAG 954
Query 958 TCCCTACAAGAAGTCCTTTTCTTGAATAACAAGTTAACAGGTTGCTTACCATACCAAATT 1017
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 955 TCCCTACAAGAAGTCCTTTTCTTGAATAACAAGTTAACTGGTTGCTTACCGTACCAAATT 1014
Query 1018 GGGAACCTTAACCGAGCTACGGTTTTCGATGTTGAGTCAAACCAGTTAACCGGTCTGATT 1077
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1015 GGGAACCTTAACCGAGCTACGGTTTTCGATGTTGAGTTAAACCAGTTAACCGGTCCGATT 1074
Query 1078 CCGTACTCTTTCGGATGCCTAAACAAGATGGAGCAGCTCAATTTGGCTAGAAACAACTTC 1137
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1075 CCGTACTCTTTCGGATGCCTAAAGAAGATGGAGCAGCTGAATTTGGCTAGAAACAATTTC 1134
Query 1138 TACGGTACTATACCGGAGATTGTCTGCGAGCTCTCAGCCCTCAAGAACCTTTCTCTCTCG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TACGGTACTATACCGGAGATTGTCTGCGAGCTCTCAGCCCTCAAGAACCTTTCTCTCTCG 1194
Query 1198 TCCAATTACTTCACGCAGGTAGGTCCAAAATGTCGAACACTCATCAAAAGGAAGATTCTT 1257
| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1195 TACAATTACTTCACACAGGTCGGTCCAAAATGTCGAACACTCATCAAGAGGAAGATTCTT 1254
Query 1258 GATGTGGGTATGAATTGTATACTAGATCTTGCGAATCAAAGAGCACCATGGGAATGCGCC 1317
|||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 1255 GATGTGGGTATGAATTGTATTCTAGATCTTACGAATCAAAGAACACCATGGGAATGCGCC 1314
Query 1318 AAGTTTTTCTTGCGGAAACAGAGTTGTCCTAACTATAAGTCTTTCTTTTATGTCCCTTGT 1377
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1315 AAGTTTTTCTTGCGGAAACAGAGTTGTCCTAACTTTAAGTCTTTCTTTTATCTCCCTTGT 1374
Query 1378 GGAAAAGATCCGCACCGGATTAAACCAGATCAAGAAGGATTAGACGGTCAGGCTTCGCCG 1437
|| |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1375 GGCAAAGATCCCCACCGGATTAAACCGGATCAAGAAGGATCAGACGGTCAGGCTTCGCCA 1434
Query 1438 CCGGTATCTTATGGTGCTCTTAACCCAGACCGGATTCGGAATCTCTAG 1485
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1435 CCGGTATCTTACAATGCTCTTAACCCAGACCGGATTCGGAATCTCTAG 1482
> AT1G49750.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr1:18410929-18412801 REVERSE LENGTH=1755
Length=1755
Score = 699 bits (378), Expect = 0.0
Identities = 801/999 (80%), Gaps = 53/999 (5%)
Strand=Plus/Plus
Query 448 TGGGTAGGCACCGACATTTGCGCTCAGGACAAATATATAGGACT-AGAGTGCGCCAAGTT 506
|||| |||| ||||||||| | || ||||||| | ||||| | | ||||||| ||
Sbjct 458 TGGGAAGGCCCCGACATTT--G--CA--ACAAATACCTCGGACTCA-AATGCGCCATTTT 510
Query 507 CCCGGGAACAAACG-ACCTCGCACTTGCCAGCATTCAGTTCAACAACTTTAACTTGGGAG 565
|||| |||||| | | |||||||| || ||| | ||||| || || |||||| |||
Sbjct 511 CCCGAAAACAAA-GCATCTCGCACTCGCGAGCGTCCAGTTTAATGGGTTAAACTTGAGAG 569
Query 566 GCAAG--A---AA-CTCCGC---CTAGATAACTTCCTTAACAAGTTAGAAGAAGTCACCA 616
||||| | || ||| | ||||||||||||| |||||||||||||||||||||
Sbjct 570 GCAAGATAGGCAAGATCCTCAAGTTAGATAACTTCCTCGACAAGTTAGAAGAAGTCACCA 629
Query 617 TCTTCCACGCAAA-TAGTAACAGTTTCGTGGGCTCTGTTCCAAAATTCAGCAACTTGAAG 675
||||||||||||| | ||| ||||| |||||||| || | |||||||| |||||
Sbjct 630 TCTTCCACGCAAACTCC-AACGGTTTCACAGGCTCTGTGCCTGATTTCAGCAATTTGAAA 688
Query 676 TACCTTTT-CGAGCTTGATCTCAGCAACAATAAGCTCTCTGGAGAGTTCCCAAGCTC-TG 733
| | || | |||||| ||||| |||||||| || ||| | ||||| ||||||| || ||
Sbjct 689 TTC-TTATACGAGCTCGATCTAAGCAACAACAAACTCACAGGAGATTTCCCAA-CTAGTG 746
Query 734 TACTA-AAAGCAA-CAAACCTAACGTTTCTCGATCTCAGATTCAATTCTTTCTCCGGTTC 791
| || |||| || ||| | | |||||||| |||||||| |||||||||||||| || ||
Sbjct 747 T-CTTGAAAGGAAACAATC-TCACGTTTCTTGATCTCAGGTTCAATTCTTTCTCAGGCTC 804
Query 792 TGTGCCTCCTCATGTTTTTAATCTCGACCTGGACGTATTGTTCATCAACAACAACAATCT 851
||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 805 TGTTCCTCCTCAGGTCTTTAATCTCGACCTCGACGTCTTGTTCATCAACAACAACAATCT 864
Query 852 TGTTCAGA-GACT-CC-CTGAGAATCTCGGATCCATCACTGCTCTTTACCTCACATTCGC 908
|||||||| | || || || | | ||| |||||||||||||||||||||||||| |||||
Sbjct 865 TGTTCAGAAG-CTTCCACTCA-A-TCTTGGATCCATCACTGCTCTTTACCTCACCTTCGC 921
Query 909 TAACAACAGATTCACAGGTCCTATTCCGGGAAGCATTGGTGACATCAAGTCCCTACAAGA 968
|||||||| ||||| ||||| ||||| | |||||| || ||||||||| |||||||||
Sbjct 922 CAACAACAGGTTCACGGGTCCAATTCCCGAAAGCATAGGCAACATCAAGTACCTACAAGA 981
Query 969 AGTCCTTTTCTTGAATAACAAGTTAACAGGTTGCTTACCATACCAAATTGGGAACCTTAA 1028
|||||||||| |||||||||||||||| || |||||||| |||||||| || ||||| ||
Sbjct 982 AGTCCTTTTCCTGAATAACAAGTTAACCGGATGCTTACCGTACCAAATCGGAAACCT-AA 1040
Query 1029 CC-GAGCTACGGTTTTCGATGTTGAGT-CAAACCAGTTAACCGGTCTGATTCCGTACTCT 1086
|| |||| || ||||||||||||| || ||| ||| |||||||||| || |||||||||
Sbjct 1041 CCCGAGCCACTGTTTTCGATGTTGGGTTCAA-CCAATTAACCGGTCCAATACCGTACTCT 1099
Query 1087 TTCGGATGCCTAAACAA-GATGGAGCAGCTCAATTTGGCTAGAAACAACTTCTACGGTAC 1145
||||| ||| || | || |||||| || |||||||| || ||||||| ||||| || ||
Sbjct 1100 TTCGGTTGCTTAGA-AACGATGGAACAACTCAATTTAGCCGGAAACAAGTTCTATGGAAC 1158
Query 1146 TATACCGGAGATTGTCTGCGAGCT--CTCAGCCCTC-AAGAACCTTTCTCTCTCGTCCAA 1202
|||||||||||||| |||||| | || | | || || ||| ||||||||||| ||
Sbjct 1159 CATACCGGAGATTGTATGCGAGATTGCTT-GTC-TCCAA-AACGTTTCTCTCTCGAATAA 1215
Query 1203 TTACTTCACGCAGGTAGGTCCAAAATGTCGAACACTCATCAAAAGGAAGATTCTTGATGT 1262
||||||||| ||||| ||||| |||||| ||| ||||||||| || || ||| | || ||
Sbjct 1216 TTACTTCACTCAGGTTGGTCCGAAATGTAGAAAACTCATCAAGAGAAAAATTATGGACGT 1275
Query 1263 GGGTATGAATTGTATACTAGATCTTGCGAATCA-AAGAGCACCATGGGAATGCGCCAAGT 1321
|||||||||||||||| |||||| | || || || | | |||| ||| || || ||||
Sbjct 1276 TAGTATGAATTGTATACTTGATCTTCCAAACCAGAAAA-CGCCATCGGAGTGTGCTAAGT 1334
Query 1322 TTTTCTTGCGGAAACAGAGTTGTCCTAACTATAAGTCTTTCTTTTA-TGTCCCTTGTGGA 1380
| ||| |||||||||||| ||||||||| | |||||||| ||| | ||||||||||| |
Sbjct 1335 TCTTCATGCGGAAACAGACTTGTCCTAATTCCAAGTCTTTGTTT-ACTGTCCCTTGTG-A 1392
Query 1381 AAAGA-TCCGCACCGGATTAAACCAGATCAAGAAGGATT 1418
|||| ||| ||||| |||||| ||||||||| ||||
Sbjct 1393 TAAGAATCCAAACCGGGGTAAACCGGATCAAGAACGATT 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73242595155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5