BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479449
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19330.1 | Symbols: | Protein of unknown function (DUF677) ... 1188 0.0
AT3G19250.1 | Symbols: | Protein of unknown function (DUF677) ... 481 8e-135
> AT3G19330.1 | Symbols: | Protein of unknown function (DUF677)
| chr3:6699341-6701300 FORWARD LENGTH=1497
Length=1497
Score = 1188 bits (643), Expect = 0.0
Identities = 713/747 (95%), Gaps = 4/747 (1%)
Strand=Plus/Plus
Query 29 AAAGTGATCAGGTGTTATGTATGATTCAGTAGCTTTTCATTGATGAATCAAGTTCATCTT 88
||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 19 AAACTGATCAGCTGTTATGTATGATTCAGTAGCTTTCCATTGATGAATCAAGTTCATCTT 78
Query 89 CTAGATGCGGAACTGTCTTTCCTTCAACCCAGCCTCTCCGGAGGTCTCTCTCGGCGACGA 148
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 79 CTAGATGCGGAACTGTCTTTCCTTCAACCCAGCCTCTCCGGAGGCCTCTCTCGGCGACGA 138
Query 149 CCCTCTTCCCCATCCGTCCCTAGAGAGTGGTGAGGCCTCCACTTCCAGAAACGACGCTTC 208
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 139 CCCTCTTCCCCATCCGTCCTTAGAGAGTGGTGTGGCCTCCACTTCCAGAAACGACGCTTC 198
Query 209 TATTCCGTCTCCCACGTTTAACCTCAGCCGTGAGTTGGCTCACGCTTTTCAAACCCCTTC 268
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 199 TATTTCGTCTCCCACGTTTAACCTCAGCCGCGAGTTGGCTCACGCTTTTCAAACCCCTTC 258
Query 269 ATACCACGACGTACGTTCAAGGGTTCACGTGGTTGTTGACCCTACACAACA-TCATCATC 327
||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||||||
Sbjct 259 ATACCACGACGTACGTTCACGGGTTCACGTGGTTGTTGACCTTACACAA-ATTCATCATC 317
Query 328 AG-TACATCCAACCAGATATTGAGCTGCTTATTTCTCAAGTGCTCCAACCAAATAAAGAA 386
| | |||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 318 GGCT-CATCCAACCAGACATTGAGCTGCTTCTTTCTCAAGTGCTCCAACCAAATAAAGAA 376
Query 387 TGTGTTCAAGAAGCTATTAGACACGTCAAGCAAACTACACTTACCAATCTCGTTTCCACT 446
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 377 TGTGTTCAAGAAGCTATTAGACACGTCAAGCAAACTACACTTACTAATCTCGTTTCTACT 436
Query 447 TACTTCCAACACAGCGAAGACGCTACCCGCCTTTGCTTGAATCTTTACCAAAACGTCCAC 506
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 437 TACTTCCAACACAGCGAAGACGCTACCCGCCTTTGCTTAAATCTTTACCAAAACGTACAC 496
Query 507 AGTGCTCGCCACCACCTCTACACACCTCTCTTAGACCTCTTCAACAGCTTTCCCGGTGAT 566
||||||||||||||||||||||| || || |||||||||||||||| |||||||||||||
Sbjct 497 AGTGCTCGCCACCACCTCTACACGCCCCTTTTAGACCTCTTCAACATCTTTCCCGGTGAT 556
Query 567 ACACACGCCGCCATTGACGAGTCCCTATGTAACCTGGCATTTGACGTTTTTCTTAAGCTC 626
||| | ||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 557 TCACTCCCCGCCATTGACGAGTCCCTATGTGACCTGGCATTCGACGTTTTTCTTAAGCTC 616
Query 627 GACACGTTTGAAAACCCTTTCTCATCTCCTGAATCTCACAGCTTTCAAGACACCCAACTA 686
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||
Sbjct 617 GACACGTTTGAAAACCCTTTCTCATCTCCTGAATCTTACAGCTTTCGAGACACCCAATTA 676
Query 687 TGCTTCTCCCAGCTGAAGAATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTC 746
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 677 TGCTTCTCCCAGCTGAAGCATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTC 736
Query 747 CGCCTCATCCACCATGCCACAGCTGGT 773
|||||||||||||||||||||||||||
Sbjct 737 CGCCTCATCCACCATGCCACAGCTGGT 763
Score = 547 bits (296), Expect = 7e-155
Identities = 360/390 (92%), Gaps = 7/390 (2%)
Strand=Plus/Plus
Query 771 GGTCCCTTGTGCAGTCCCTATCTTCCTCACAGTTTCAAGAAG-AAGGAGTTAACTAACAT 829
||||||||||||||||| || || ||||||||||||||| || |||||||||||||||||
Sbjct 857 GGTCCCTTGTGCAGTCCTTACCTCCCTCACAGTTTCAAG-AGAAAGGAGTTAACTAACAT 915
Query 830 TTGTCAGCTCAATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTGGACACCAT 889
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 916 TTGTCAGCTCAATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTTGATACCAT 975
Query 890 TGACCGTCTTGTCTCCCGTTTGCACACTGGGATTGAATACGACAAGCATTTAATTCGGCT 949
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 976 TGACCGTCTTGTCTCCCGTTTGCACACTGGAATTGAATACGACAAGTTTTTAATTCGACT 1035
Query 950 TGGATTAGAGAGGGGGAGGGACGTGCATTCAATTCAGGAGATTGTGAAACAGCTTCGCAA 1009
|||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||
Sbjct 1036 TGGATTAGAGAGGGGGAGGGACGTGCATTCAATTCAAGAGATTCTGAAACTGCTTCGCAA 1095
Query 1010 GAGCCACCTTAACCTCACCCAGCAACTCAAGGATCTTGAAGATCATATATGTCTTTGGTT 1069
||||||||| ||||||||| ||||||||||||||||| |||||||| || ||||||||
Sbjct 1096 GAGCCACCTCCCCCTCACCCATCAACTCAAGGATCTTGAGGATCATATTTGCCTTTGGTT 1155
Query 1070 CACTAACGTTAACAAAGCTAGATCGTTGCTCCTTAA-AGAGATCCATCTTCCTCGAACC- 1127
||||||||||||||||||||||||||||||||| || |||||| |||||||||||| ||
Sbjct 1156 CACTAACGTTAACAAAGCTAGATCGTTGCTCCT-AACAGAGATTCATCTTCCTCGACCCA 1214
Query 1128 -C-ATGTTAGTCTGTAGAGAGAACAAATTA 1155
| |||||| |||||||| |||||||||||
Sbjct 1215 GCCATGTTATTCTGTAGATAGAACAAATTA 1244
> AT3G19250.1 | Symbols: | Protein of unknown function (DUF677)
| chr3:6666842-6668395 REVERSE LENGTH=1470
Length=1470
Score = 481 bits (260), Expect = 8e-135
Identities = 467/562 (83%), Gaps = 34/562 (6%)
Strand=Plus/Plus
Query 220 CCACGTTTAACCTCAGCCGTGAGTTGGCTCACGCTTTTCAAACCCCTTCATACCACGACG 279
|||| ||||||||||||| ||||| ||||| |||||||||||||| || |||||||||
Sbjct 482 CCACTTTTAACCTCAGCCACGAGTTAGCTCATGCTTTTCAAACCCCGTCGTACCACGACA 541
Query 280 TACGTTCAAGGGTTCACGTGGTTGTTGACCCTACACAACATCATCATCAGTACATCCAAC 339
|||||||| || || | | ||| |||| | | | | | || || || ||
Sbjct 542 TACGTTCACGGCTT--C-TTGTTATTGA--C--C-C-A-A-CA-CA--AG-------AA- 579
Query 340 CAGATATTGAGCTGCTTATTTCTCAAGTGCTCCA-ACCAAATAAAGAATGTGTTCAAGAA 398
| || | |||||| || ||||||||| ||| || |||||| || |||| |||||||||
Sbjct 580 -A-ATCTCGAGCTGTTTCTTTCTCAAGAGCT-CAGACCAAACAACGAATCCGTTCAAGAA 636
Query 399 G--C-TA---TTAGACACGTCAAGCAAACTACACTTACCAATCTCGTTTCCACTTACTTC 452
| | || ||||||||| |||||||||||||||||||||||| || || |||||||||
Sbjct 637 GCTCTTAGTCTTAGACACGCCAAGCAAACTACACTTACCAATCTTGTCTCTACTTACTTC 696
Query 453 CAACACAGCGAAGACGCTACCCGCCTTTGCTTGAATCTTTACCAAAACGTCCACAGTGCT 512
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 697 CAACACAGCGAAGACGCCACCCGATTTTGCTTGAATCTTTACCAAAACGTCCACAGTGCT 756
Query 513 CGCCACCACCTCTACACACCTCTCTTAGACCTCTTCAACAGCTTTCCCGGTGATACACAC 572
||| ||||||||||||||| ||||||||||||||||| | ||||||| ||||| | ||
Sbjct 757 CGCTGCCACCTCTACACACCCCTCTTAGACCTCTTCAATATCTTTCCCCGTGATTCCCAT 816
Query 573 GCCGCCATTGACGAGTCCCTATGTAACCTGGCATTTGACGTTTTTCTTAAGCTCGACACG 632
|||| |||||||||||| | |||||| | ||||| ||||||||||||||||| ||||||
Sbjct 817 TCCGCAATTGACGAGTCCTTCTGTAACTTAGCATTCGACGTTTTTCTTAAGCTTGACACG 876
Query 633 TTTGAAAACCCTTTCTCATCTCCTGAATCTCACAGCTTTCAAGACACCCAACTATGCTTC 692
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 877 TTTGAAAACCCTTTCGCATCTCCTGAATCTCACAGCTTTCAAGACACCCAATTATGCTTT 936
Query 693 TCCCAGCTGAA-GAATAATCTGGACAGACGTCTTCGCAAGTCTAGGTCACGGGTCCGCCT 751
| |||||| || || ||||||| ||| |||| ||||||| |||||||||||||||
Sbjct 937 TATCAGCTGGCTGAC-AAGCTGGACACCCGTATTCGTAAGTCTAAGTCACGGGTCCGCCT 995
Query 752 CATCCACCATGCCACAGCTGGT 773
| |||| |||||||||||||||
Sbjct 996 CCTCCATCATGCCACAGCTGGT 1017
Score = 436 bits (236), Expect = 2e-121
Identities = 313/351 (89%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 771 GGTCCCTTGTGCAGTCCCTATCTTCCTCACAGTTTCAAGAAGAAGGAGTTAACTAACATT 830
||||||||||||| |||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 1111 GGTCCCTTGTGCACTCCCTACCTCCCTCACAGTTTCAAGAAGAAGGAGTTGTCTAACATT 1170
Query 831 TGTCAGCTCAATGCTGCTTCCAAGGGTACTTTTGTGCTCAACAAAGATCTGGACACCATT 890
| |||||| |||| |||| ||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1171 TTTCAGCTAAATGTTGCTGCCAAGGGTACTTTTGCGCTCAACAAAGATCTTGACACCATT 1230
Query 891 GACCGTCTTGTCTCCCGTTTGCACACTGGGATTGAATACGACAAGCAT-TTAATTCGGCT 949
|||||||||||||||||||||||||| ||| || || ||||||||| | ||| |||| ||
Sbjct 1231 GACCGTCTTGTCTCCCGTTTGCACACGGGGGTTAAAAACGACAAGCTTCTTA-TTCGCCT 1289
Query 950 TGGATTAGAGAGGGGGAGGGACGTGCATTCAATTCAGGAGATTGTGAAACAGCTTCGCAA 1009
||||||||||||||||||||||||| || |||||| |||| |||||||||||||||| ||
Sbjct 1290 TGGATTAGAGAGGGGGAGGGACGTGTATACAATTCCGGAGTTTGTGAAACAGCTTCGAAA 1349
Query 1010 GAGCCACCTTAACCTCACCCAGCAACTCAAGGATCTTGAAGATCATATATGTCTTTGGTT 1069
|||||| |||||| |||||| |||||| ||| ||||| ||||||||||||| ||||||
Sbjct 1350 GAGCCATGTTAACCACACCCATCAACTCGAGGTTCTTGTGGATCATATATGTCGTTGGTT 1409
Query 1070 CACTAACGTTAACAAAGCTAGATCGTTGCTCCTTAAAGAGATCCATCTTCC 1120
|||||| ||||||||| | ||||||||||||||||||||||||| || |||
Sbjct 1410 CACTAATGTTAACAAATCCAGATCGTTGCTCCTTAAAGAGATCCTTCGTCC 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5