BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479452
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19360.1 | Symbols: | Zinc finger (CCCH-type) family protei... 2091 0.0
> AT3G19360.1 | Symbols: | Zinc finger (CCCH-type) family protein
| chr3:6707241-6709028 FORWARD LENGTH=1383
Length=1383
Score = 2091 bits (1132), Expect = 0.0
Identities = 1316/1401 (94%), Gaps = 28/1401 (2%)
Strand=Plus/Plus
Query 1 AAAAACCCTAAATCGCGTTTCTTCTCTCAAATCTTCCGCCGCCATCATTGATCCAGTTAT 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 AAAAACCCTAAATCGCGTTTCTTCTCTCAAATCTGCCGCCGCCATCATTGATCCAGTTAT 60
Query 61 GGATTCGAGTTACTCTGATCCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGATTCGAGTTACTCTGATTCTCGTCCCATGTTCGTGCAATCACCTTATGGTGGTTGGAA 120
Query 121 TCAAACCCAGATGATTGATTCAATGGCTAATCCAACGAACAACGAACAAGGAGACTTGCA 180
|||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 121 TCAAACACAGATGATTGATTCAATGGCTAATCCAATGAACAATGAACAAGGAGACTTGCA 180
Query 181 TTCACTATCTGAATCACAATCACAGTCACAATCTCAACCGCCTCAGCAGTTACAGCCTGC 240
|||||||||||||| | | || | ||||||||||||||| ||||||| |||||||||||
Sbjct 181 TTCACTATCTGAAT--C-A-CA-A-TCACAATCTCAACCGTCTCAGCAATTACAGCCTGC 234
Query 241 ATTGAAAAGGCCAAGACTTGTTGATGATAACGTGTTTAATCCGGCTTCATCGTTTCCTCA 300
|||||||||||| |||||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct 235 ATTGAAAAGGCCTAGACTTGTTGATGATAACTTGTTTAATCCTGCTTCGTCGTTTCCTCA 294
Query 301 GCCTTCGAGTAGTAATCCTTGGATGGTTCCGTCGTTAAACCCTCCTCCTGTGAACAAAGG 360
|||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 295 GCCTTCGAGTAGCAATCCTTGGATGGTTCCATCTTTGAACCCTCCTCCTGTGAACAAAGG 354
Query 361 GACGGCTAATATATTCTATAAGACTAGAATGTGTGCGAAATTCAGGGCCGGGACTTGTAG 420
||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 355 GACTGCTAATATATTCTATAAGACTAGAATGTGTGCTAAATTCAGGGCAGGGACTTGTAG 414
Query 421 GAATGGTGAACTCTGTAATTTTGCTCATGGGATCGAGGATTTGAGGCAGCCTCCGTCGAA 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 415 GAATGGTGAACTCTGTAATTTTGCTCATGGGATTGAGGATTTGAGGCAGCCTCCGTCGAA 474
Query 481 TTGGCAGGAAATTGTTGGACCTCCT-C--CTGGTCAAGATagggagaaggaaagggagag 537
||||||||||||||||||||||||| | |||||||||| | || | | | ||||||||
Sbjct 475 TTGGCAGGAAATTGTTGGACCTCCTCCTGCTGGTCAAGACA-GG-G-A-G--AGGGAGAG 528
Query 538 ggaaagggagagggagagggaaagaCCGTCATTGGCGCCTGTTGCGAATAATAATTGGGA 597
|| ||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 529 AGAGAGGGAAAGGGAGAGGGAAAGACCGTCTTTGGCGCCTGTTGTGAATAATAATTGGGA 588
Query 598 AGATGATCAAAAGATAATCTTGAGGATGAAGCTTTGCAGGAAGTTTTGTTTTGGGGAAGA 657
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 589 AGATGATCAGAAGATAATCTTGAGGATGAAGCTTTGTAGGAAGTTTTGTTTTGGGGAAGA 648
Query 658 GTGTCCTTATGGGGACAGGTGCAATTTCATTCATGAGGATCTGTCAAAGTTTCGTGAGGA 717
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 649 GTGTCCTTATGGGGACAGGTGCAATTTTATTCATGAGGATCTGTCAAAGTTTCGTGAGGA 708
Query 718 CTCGGGGAAATTGAGAGAGAGCTCGGTTATAAGTGTTGGTACTTCTGCTGCTGATCCACC 777
||||||||| |||||||||||||||||||||||||||||| || |||||||||||| |||
Sbjct 709 CTCGGGGAAGTTGAGAGAGAGCTCGGTTATAAGTGTTGGTGCTACTGCTGCTGATCAACC 768
Query 778 ATCTGATACTGCCTCGAATCATATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGC 837
|||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATCTGATACTGCTTCTAATCTTATTGAAGTAAATAGACAAGGAAGCATCCCGGTACCTGC 828
Query 838 ACCTTTGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAA 897
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ACCTATGAACAATGGTGGTGTTGTCAAGACTGTGTACTGGAAGACGAGGTTGTGCATGAA 888
Query 898 GTTTGACATCACGGGTCAATGCCCTTTTGGTGATAAGTGTCACTTTGCTCATGGCCAAAC 957
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
Sbjct 889 GTTTGACATCACGGGTCAATGTCCTTTTGGCGATAAGTGTCACTTTGCTCATGGCCAAGC 948
Query 958 AGAGTTGCATAACTCTGTTGGAAGGGCT-GATGGAGAAGCTGTGAACGC--TACCGCGTC 1014
|||||||||||||||||||||||||| | || ||||||||| ||||||| || |||||
Sbjct 949 AGAGTTGCATAACTCTGTTGGAAGGG-TAGAAGGAGAAGCTATGAACGCGGTA--GCGTC 1005
Query 1015 TGTGAGTAAACAAACAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCAACTACACA 1074
||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1006 TGTGAATAAACAAGCAGTGGTACCTGCGAATGAAGCATTTGCAATGAAACCGATTACACA 1065
Query 1075 AGTAACAGCTGATTCTTCTGGTCTGAACGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAA 1134
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1066 AGTAACAGCAGATTCCTCTGGTCTGAATGAAGAAGGGCGGCGAAAGAAGTGTTTGCTCAA 1125
Query 1135 GTGGAGCGACTCTAAGAAGATTAACCGAATCTATGGAGACTGGATCGATGATTTACCGGT 1194
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1126 GTGGAGCGACTCCAAGAAGATTAACCGAATATATGGAGACTGGATCGATGATTTACCGGT 1185
Query 1195 GGGTCAAAAGTCGTCAAAGCCAGTAGAGAGCTGAGTTTTCTAGCCTGGTTCCATTTGTCT 1254
||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1186 GGGTCAAAAGTCGACAAAGCCAGTAGAGAGTTGAGTTTTCTAGCCTGGTTTCATTTGTCT 1245
Query 1255 TGTC-TTTTGATGATCAAAAGTGATAAAGCTTTGGTCGGAAATTTTGAAGAGTAGAAACA 1313
||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1246 CGTCCTTTTGATGATCAAAACTGATAAAGCTTTGGTCGAAAATTTTGAAGAGTAGAAACA 1305
Query 1314 CTCTTTATTT-GATTTCATTAGCAATTCTTTGATTCGCTATTAGCTTAGAAT-TTCGCTT 1371
|||||||||| | || ||||||||||||||||||||||||| |||||||||| || ||||
Sbjct 1306 CTCTTTATTTTG-TT-CATTAGCAATTCTTTGATTCGCTAT-AGCTTAGAATATT-GCTT 1361
Query 1372 TTGTTGTAATCTTTGATTACA 1392
||||| |||||||||||||||
Sbjct 1362 TTGTTATAATCTTTGATTACA 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5