BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479456
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19380.1 | Symbols: PUB25 | plant U-box 25 | chr3:6714392-67... 2287 0.0
AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-1... 883 0.0
> AT3G19380.1 | Symbols: PUB25 | plant U-box 25 | chr3:6714392-6716099
REVERSE LENGTH=1708
Length=1708
Score = 2287 bits (1238), Expect = 0.0
Identities = 1493/1610 (93%), Gaps = 42/1610 (3%)
Strand=Plus/Plus
Query 35 TATTAAAAAATCCAGCAGGTAACAAAGTTATAAATGGCACACGTGTGGGCTCATACCCCA 94
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 82 TATTAAATAATCCAGCAGGTAACAAAGTTATAAATGGCACACGTGTGGGCTCATA-CCCA 140
Query 95 GATAAGTGTCTCGTTCCTCATA---TTCACTCTCACAACAAACAAtctcacctttctcct 151
|||||| |||||||||||||| || || |||||||||||||||||||||||||| ||
Sbjct 141 GATAAG-CTCTCGTTCCTCATACTCTTAACGCTCACAACAAACAATCTCACCTTTCTTCT 199
Query 152 tcttcttc-tctctctgtttctgaatttttcttAATGCCTAGAAATTTACAACCATTGGA 210
|||||||| ||||||||||||| || ||||||||||||||| ||| || ||||||||||
Sbjct 200 TCTTCTTCTTCTCTCTGTTTCTCAA-GTTTCTTAATGCCTAGGAATATAGAACCATTGGA 258
Query 211 TCTTGGAATCCAAATACCGTACCATTTCCGATGTCCAATCTCTCTCGAACTTATGCAAGA 270
|||||||||||||||||| || |||||| |||||||||| || |||||||||||||||||
Sbjct 259 TCTTGGAATCCAAATACCATATCATTTCAGATGTCCAATATCACTCGAACTTATGCAAGA 318
Query 271 CCCTGTCACCGTCTGCACCGGCCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCTC 330
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CCCAGTCACCGTCTGCACCGGCCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCTC 378
Query 331 CATCGGTAACAACACAACCTGTCCAGTCACACGCGCTCCTCTCTCCGACTTCACACTCAT 390
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 379 CATCGGTAACAACACGACATGTCCAGTCACACGAGCTCCTCTCTCCGACTTCACACTCAT 438
Query 391 CCCCAACCACACTCTCCGTCGTCTCATCCAAGAATGGTGCGTCGCTAACCGCTCCAATGG 450
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CCCTAACCACACTCTCCGTCGTCTCATCCAAGAATGGTGCGTCGCTAACCGCTCCAATGG 498
Query 451 CGTCGAACGTATCCCTACTCCTAAACAACCAGCTGATCCAACCTCTGTTCGTGCTCTTCT 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 AGTCGAACGTATCCCTACTCCTAAACAACCAGCTGATCCAACCTCTGTTCGTGCTCTTCT 558
Query 511 CAGTCAAGCCTCCGCTATAACGGGAACTCACGTCTCTGTTCGTTCACGCGCCGCCGCTCT 570
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 559 CAGTCAAGCCTCTGCTATAACAGGAACCCACGTCTCTGTTCGTTCACGCGCCGCCGCTCT 618
Query 571 CCGCCGTTTACGTGGATTCGCTCGTGATTCTGATAAAAACCGCGTTTTGATCGCAGCTCA 630
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 619 CCGCCGTTTACGTGGTTTCGCTCGTGATTCTGATAAAAATCGCGTTTTGATCGCAGCTCA 678
Query 631 TAACGCTACAGAGGTTTTGATTAGGATTCTGTTCTCTGAAACGACGTCGTCGGAGTTGGT 690
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 679 TAACGCTACAGAGATTTTGATTAAGATTCTGTTCTCTGAAACGACGTCGTCGGAGTTAGT 738
Query 691 CTCTGAGTCGTTAGCTCTTCTTGTTATGTTACCGATAACGGAACCGAATCAGTGCGTTTC 750
||||||||| |||||||| ||||||||||||||||||||||| ||||| |||| |||||
Sbjct 739 CTCTGAGTCTTTAGCTCTACTTGTTATGTTACCGATAACGGAGCCGAACCAGTTTGTTTC 798
Query 751 GATATCTTCGGATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCCTCGAT 810
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 799 GATATCGTCGGATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCGTCGAT 858
Query 811 CGAAACACGCGTTAACGCCGCCGCGTTGATCGAGATTGTTTCGACGGGAACCAAATCGAC 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 859 TGAAACACGCGTTAACGCCGCCGCGTTGATCGAGATTGTTTCGACGGGAACCAAATCGGC 918
Query 871 GGATCTGAAAGGAATGTTTTCGATTTCGAATTCTGAATCTGTATTCGAAGGAGTTCTCGA 930
||| |||||| | | ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 919 GGACCTGAAA-G---G--TTCGATTTCGAATTCAGAATCTGTATTCGAAGGAGTTCTCGA 972
Query 931 TCTTCTGAGGAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTT 990
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TCTTCTGAGAAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTT 1032
Query 991 CGCGCTCTGCTT-AGTGAAATCCACGCGACACATAGCGATCACCGCCGGTGCGCCGGAGA 1049
||||||||| || ||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 1033 CGCGCTCTG-TTCAGTGAAATCGACGCGACACATCGCGATCACAGCCGGTGCGCCGGAGA 1091
Query 1050 TTCTAATAGACAGACTCGCGGCGGATTTCGACAGGTGCGACACAGAGCGTGCCTTAGCGA 1109
||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||
Sbjct 1092 TTCTAATAGACAGACTCGCGGCGGATTTCGATAGATGCGATACGGAGCGAGCCTTAGCGA 1151
Query 1110 CGGTGGAGCTACTCTGCCGATCGCCGGAAGGATGCGCCGCGTTCGGAGAGCACGCTTTAA 1169
|||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||
Sbjct 1152 CGGTGGAGCTACTCTGCCGAACGCCGGAAGGATGCGCGGCGTTCGGTGAGCACGCTTTAA 1211
Query 1170 CGGTGCCGTTGCTGGTGAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTACGCGG 1229
||||||||||| | || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1212 CGGTGCCGTTGTTAGTTAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTATGCGG 1271
Query 1230 CGGGGGCGTTGTTAGCGCTTTGTACAGCGGAGGAAAGGTGGCGGGAGGAAGCGGCGGCGG 1289
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||
Sbjct 1272 CGGGGGCGTTGTTAGCGCTTTGTACGGCGGAGGAAAGGTGGAGGGAGGAAGCGGCGGGGG 1331
Query 1290 CGGGAGTGGTGGTACAGTTGTTGTTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGA 1349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 CGGGAGTGGTGGTACAGTTGTTGTTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGA 1391
Query 1350 AGAAAGCACAGAAGTTACTGAAGCTTCTGAGAGATTCATGGCCTGACTACAATTCCTTCG 1409
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AGAAAGCACAGAAGTTATTGAAGCTTCTGAGAGATTCATGGCCTGACTACAATTCCTTCG 1451
Query 1410 CTAACTCCGATGACTTTGGTTGCAGCAGCCAAGTGGTCCCtttttgattt-t---ttt-- 1463
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1452 CTAACTCCGATGACTTTGGTTGCAGCAGCCAAGTGGTCCCTTTTTGATTTCTCGATTTTT 1511
Query 1464 ------ca---cagtaattatt-a-att--ttat-aatgtttttttttttttttCTAATT 1509
|| || | || || | | | |||| || | |||||||||| ||||
Sbjct 1512 TTTTTTCAAAACATTGTTTTTTCACAGTAATTATTAAAAAAATGTTTTTTTTTT--AATT 1569
Query 1510 AGAAGGAAAAAT---GGTCATTTTT-GTGTGTATGTGATGGGAAGATGTGAAGAAGAAA- 1564
|||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||
Sbjct 1570 AGAAGGAAAAATAATGGTCATTTTTTGTGTGTATTTGATGGAAAGATGTGAAGAAGAAAA 1629
Query 1565 GATAATATACAGAAACTTTTTGATGACCATGAATTAGttttttttttttt 1614
|||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1630 GATAATATACAGAAGCTTTTTGATGACCATGAATTAGTTTTTTTTTTTTT 1679
> AT1G49780.1 | Symbols: PUB26 | plant U-box 26 | chr1:18428906-18430319
REVERSE LENGTH=1414
Length=1414
Score = 883 bits (478), Expect = 0.0
Identities = 1002/1247 (80%), Gaps = 68/1247 (5%)
Strand=Plus/Plus
Query 184 AATGCCTAGAAATTTACAACCATTGGATCTTGGAATCCAAATACCGTACCATTTCCGATG 243
|||||| | |||||| | || |||||||| |||||||||||||| ||||||||| ||||
Sbjct 30 AATGCCGGGGAATTTAGAGCCGTTGGATCTCGGAATCCAAATACCATACCATTTCAGATG 89
Query 244 TCCAATCTCTCTCGAACTTATG-CAAGA-CCCTGTCACCGTCTGCACCGGCCAAACCTAC 301
|||||||| || || || ||| | || ||| || ||| ||| |||||||||||| |||
Sbjct 90 CCCAATCTCACTTGACCTAATGTC-TGATCCC-GTAACCATCTCCACCGGCCAAACTTAC 147
Query 302 GACCGAGCCAGCATCGAGTCATGGGTCTCCATCGGTAACAACACAACCTGTCCAGTCACA 361
|||||| |||||||||| |||||| || | || || |||||| || ||||||||||||
Sbjct 148 GACCGAACCAGCATCGACTCATGGATCGCTAT-GG--GCAACACCACTTGTCCAGTCACA 204
Query 362 CGCGCTC-CTCTCTCCGACTTCACACTCATCCCCAACCACACTCTCCGTCGTCTCATCCA 420
|| | || |||||||||||||||| |||||||| |||||||||||||| ||||| |||||
Sbjct 205 CGTG-TCGCTCTCTCCGACTTCACTCTCATCCCTAACCACACTCTCCGCCGTCTTATCCA 263
Query 421 AGAATGGTGCGTCGCTAACCGCTCCAATGGCGTCGAACGTATCCCTACTCCTAAACAACC 480
|||||||||||||||||||||||| || ||||||||||| || ||||| |||||||||||
Sbjct 264 AGAATGGTGCGTCGCTAACCGCTCTAACGGCGTCGAACGGATTCCTACACCTAAACAACC 323
Query 481 AGCTGATCCAACCTCTGTT-CGTGCTCTTCTCAGTCAAGCCTCCGCTATAACGGGAACTC 539
|| ||||||| ||| ||| || | |||||||||||||| ||||| || || |||||||
Sbjct 324 GGCGGATCCAATCTCCGTTAGGT-CACTTCTCAGTCAAGCATCCGCAATTACCGGAACTC 382
Query 540 ACGTCTCTGTTCGTTCACGCGCCGCCGCTCTCCGCCGTTT-ACGTGGATTCGCTCGTGAT 598
||||||||||||||||||||||||||||| | || ||||| | | ||||| ||| | |||
Sbjct 383 ACGTCTCTGTTCGTTCACGCGCCGCCGCTATTCGTCGTTTGA-GAGGATTAGCTAGAGAT 441
Query 599 TCTGATAAAAACCGCGTTTTGATCGCAGCTCATAACGCTACAGAGGTTTTGATTAGGATT 658
||| || || |||||||||||||| | ||||||||| | ||| ||||| | ||||||
Sbjct 442 AGTGAGAAGAATCGCGTTTTGATCGCTGGTCATAACGCGAGGGAGATTTTGGTGAGGATT 501
Query 659 CTGTTCTC---T---GAAACGACGTCGT---C---GGAG-TTGGTCTCTGAGTCG-TTAG 704
||||| | | ||||||||||||| | |||| ||| | ||||||||| || |
Sbjct 502 TTGTTCGCCGATATTGAAACGACGTCGTTGTCTTCGGAGCTTGTT-TCTGAGTCGCTT-G 559
Query 705 CTCTTCTTG-TTATGTTACCGATAACGGA-ACCGAATCAGTGC-GTTTCGATATCTTCGG 761
||||| ||| || | || | || ||||| || || | ||| | | | | | ||||
Sbjct 560 CTCTT-TTGGTTTTATTGCATATGACGGAGACGGAGT--GTGAAGCT--GTTG-CGTCGG 613
Query 762 ATCCGGGTCGGGTCGAGTTTTTGACCCGGTTGTTATTCGATTCCTCGATCGAAAC-ACGC 820
|||| ||||||||| |||| ||||||| ||||| || ||||| ||||| |||| | |
Sbjct 614 ATCCTAGTCGGGTCGGGTTTATGACCCGATTGTTGTTTGATTCTTCGATTGAAATTAGG- 672
Query 821 GTTAACGCCGCCGCGTTGATCGAGATTGT-TTCGACGGGAACCAAATCGACGGATCTGAA 879
|||||||||||||||||||| ||||| || || ||| ||| | ||||| | |||||||||
Sbjct 673 GTTAACGCCGCCGCGTTGATTGAGATGGTGTT-GACCGGAGCGAAATCCATGGATCTGAA 731
Query 880 AGGAATGTTTTCGATTTC-GAATTCTGAATCTG-TATTCGAAGGAGTTCTCGATCTTCTG 937
| || | | ||||| | || |||| || | |||||||||| ||||||||||||||
Sbjct 732 AT---TGAT--C-ATTTCCGGAT-CTGATTC-GATATTCGAAGGCGTTCTCGATCTTCTC 783
Query 938 AGGAATCCGATTTCGTCACGACGAGCTCTCAAAATCGGAATCAAAACTCTGTTCGCGCTC 997
| |||||||||||| || || |||||| | || |||||||||||| | | ||||| |||
Sbjct 784 AAGAATCCGATTTCATCGCGGCGAGCTTTGAAGATCGGAATCAAAGCGATTTTCGCTCTC 843
Query 998 TG-CTTAGTGAAATCCA-CGCGACA-CATAGCGATCACCGCCGGTGCGCCGGAGATTCTA 1054
|| || |||||| | | || |||| | |||||||| ||||||| || |||| |||| ||
Sbjct 844 TGTCTC-GTGAAA-CAAACGAGACATC-TAGCGATCTCCGCCGGAGCTCCGGGGATTTTA 900
Query 1055 ATAGACAGACTCGCGGCGGATTTCGACAGGTGCGACACAGAGCGTGCCTTAGCGACGGTG 1114
|| ||| | ||||||||||||||||| ||||| || || ||||| | |||||||| |||
Sbjct 901 ATCGACCGTCTCGCGGCGGATTTCGATAGGTGTGATACGGAGCGAGGTTTAGCGACAGTG 960
Query 1115 GAGCTACTCTGCCGATCGCCGGAAGGATGCGCCGCGTTCGGAGAGCACGCTTTAACGGTG 1174
||||| || ||||||| || |||||||| || ||||| || ||||| ||||| ||||||
Sbjct 961 GAGCTTCTTTGCCGATTACCAGAAGGATGTGCTGCGTTTGGTGAGCATGCTTTGACGGTG 1020
Query 1175 CCGTTGCTGGTGAAAACGATATTGAGAGTTTCGGATCGCGCGACGGAGTACGCGGCGGGG 1234
||| | ||||||| |||||||| |||||||| ||| | ||||||||||||||||||||
Sbjct 1021 CCGCTAATGGTGAAGACGATATTAAGAGTTTCAGATAGAGCGACGGAGTACGCGGCGGGA 1080
Query 1235 GCGTTGTTAGCGCTTT--GTACAGCGGAGGAAAGGTGGCGGGAGGAAGCGGCGGCGGCGG 1292
|||||||| | ||||| |||| ||||||||| |||| | || ||||| ||||||||||
Sbjct 1081 GCGTTGTT-G-GCTTTATGTACGGCGGAGGAACGGTGTAGAGATGAAGCTGCGGCGGCGG 1138
Query 1293 GAGTGGTGGTACAGTTGTTG-TTGATGGTGCAGAGTGAGTGTACGGAGAGAGCGAAGAAG 1351
|| ||||| ||||||||| || ||||||||||||| ||||||||||||||||||| |
Sbjct 1139 GATTGGTGACGCAGTTGTTGCTTC-TGGTGCAGAGTGATTGTACGGAGAGAGCGAAGA-G 1196
Query 1352 AAA-GCACAGAAG-TTACTGAAGCTTCTGAGAGATTCATGGCCTGAC 1396
||| || |||| | || |||||||||| ||||| || |||||||||
Sbjct 1197 AAAAGCTCAGATGCTTT-TGAAGCTTCTCAGAGACTCTTGGCCTGAC 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79718465460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5