BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479457
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19390.1 | Symbols: | Granulin repeat cysteine protease fam... 2139 0.0
> AT3G19390.1 | Symbols: | Granulin repeat cysteine protease family
protein | chr3:6722989-6725027 FORWARD LENGTH=1653
Length=1653
Score = 2139 bits (1158), Expect = 0.0
Identities = 1325/1406 (94%), Gaps = 10/1406 (1%)
Strand=Plus/Plus
Query 1 AACAAATATGGCAACTCCAATCAAATCCATAACCCTAGCTCTCTTGATCTTCTCAATGTT 60
|||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| ||||
Sbjct 29 AACAAATATGGCTACTTCAATCAAATCTATAACCCTAGCTCTCTTGATATTCTCAGTGTT 88
Query 61 ACTAATCTCCTTGTCTCTCGGCTCCGTCACAGCGGCGGATACGACACGAAACGAGGCGGA 120
|||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||
Sbjct 89 ACTAATCTCCTTGTCTCTCGGCTCCGTCACAGCGACGGAGACTACACGAAACGAGGCGGA 148
Query 121 GGCACGGCGGATGTACGAACA-GTGGCTTGTTGAGAATCGAAAGAACTATAATGGTCTCG 179
|||||| |||||||| ||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 149 GGCACGACGGATGTATGAA-AGGTGGCTTGTTGAGAATCGGAAGAACTATAATGGTCTCG 207
Query 180 GAGAGAAAGAGACACGCTTTGAGATCTTCACAGACAACTTGAAGTACATCGAAGAGCACA 239
|||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||
Sbjct 208 GAGAGAAAGAGAGACGCTTTGAGATCTTCAAAGACAACTTGAAGTTCGTCGAAGAGCACA 267
Query 240 ATTCCGTCCCGAATCAGACTTTTGAAGTAGGGTTGACCCGGTTCGCTGATCTAACGAACG 299
|||| ||||||||| ||||| ||||| ||||||||||||||||||||| | || ||||
Sbjct 268 GTTCCATCCCGAATCGGACTTACGAAGTCGGGTTGACCCGGTTCGCTGATTTGACTAACG 327
Query 300 ATGAGTTTCGTGCGATGTACTTGAGAAGTAAGATGGAGAGAACTAGGGTTCCGGTGAAGG 359
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 328 ATGAGTTTCGTGCGATTTACTTGAGGAGCAAGATGGAGAGAACTAGGGTTCCGGTGAAGG 387
Query 360 GAGAGAGGTATTTGTATAAGGTTGGAGATA-CTTTACCTGAT-CAAATCGATTGGAGAGC 417
|||||| ||||||||||||||||||||||| | ||||||||| | ||||||||||||||
Sbjct 388 GAGAGAAGTATTTGTATAAGGTTGGAGATAGC-TTACCTGATGC-TATCGATTGGAGAGC 445
Query 418 TAAAGGTGCTGTGAATCCAGTCAAAGATCAAGGGA-ACTGTGGAAGTTGTTGGGCGTTTT 476
|||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 446 TAAAGGTGCTGTTAATCCAGTCAAAGATCAA-GGATCCTGTGGAAGTTGTTGGGCGTTTT 504
Query 477 CGGCGATTGGAGCGGTTGAAGGGATAAACCAGATTAAGACAGGAGAGTTGATATCTCTGT 536
| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 505 CCGCGATTGGAGCGGTTGAAGGTATAAATCAGATTAAGACAGGAGAGTTGATATCTTTGT 564
Query 537 CGGAGCAAGAACTTGTTGATTGTGACACAAGTTACAATGGTGGATGTGGTGGAGGTCTTA 596
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 565 CTGAGCAAGAACTTGTTGATTGTGACACAAGTTACAATGATGGATGTGGTGGAGGTCTTA 624
Query 597 TGGATTATGCTTTTAAGTTTATTATTGAAAACGGTGGTATTGATACAGAGGAAGATTATC 656
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TGGATTATGCTTTTAAGTTCATTATTGAAAACGGTGGTATTGATACAGAGGAAGATTATC 684
Query 657 CTTATACTGCAACTGATGATAACATTTGCAATTCTGACAAGAAGAATTCTCGTGTTGTTA 716
|||||| ||||||||||| |||| | ||||||||||| |||||||| ||||||||||||
Sbjct 685 CTTATATTGCAACTGATGTTAACGTGTGCAATTCTGATAAGAAGAACACTCGTGTTGTTA 744
Query 717 CTATTGATGGTTATGAGGATGTTCCTCAAAACGATGAGAAGTCTTTAAAGAAGGCTCTTG 776
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 745 CCATCGATGGTTATGAGGATGTTCCTCAAAACGATGAGAAGTCTTTGAAGAAGGCTCTTG 804
Query 777 CTAATCAACCTATTAGTGTCGCCATTGAAGCTGGTGGCCGAGCTTTCCAGCTTTACAAAT 836
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||
Sbjct 805 CTAATCAACCTATTAGTGTTGCCATTGAAGCTGGTGGCAGAGCTTTCCAGCTTTACACAT 864
Query 837 CTGGTGTGTTTACAGGAACATGTGGAACATCTTTGGACCATGGTGTGGTAGCTGTGGGAT 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 865 CTGGTGTGTTTACAGGAACATGTGGAACATCTTTGGACCATGGTGTTGTAGCTGTGGGAT 924
Query 897 ACGGATCAGAAGGTGGTCAAGACTACTGGATTGTTCGTAACTCATGGGGATCAAACTGGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 ACGGATCAGAAGGTGGTCAAGACTACTGGATTGTTCGTAACTCATGGGGATCAAACTGGG 984
Query 957 GAGAAAGCGGATATTTTAAGCTTGAACGTAACATCAAAGAGTCATCAGGGAAATGCGGTG 1016
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 985 GAGAAAGCGGATACTTTAAGCTCGAACGTAACATCAAAGAGTCATCAGGGAAATGCGGTG 1044
Query 1017 TGGCGATGATGGCTTCTTACCCTACCAAATCATCAGGCTCAAACCCACCAAAACCGCCAC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TGGCGATGATGGCTTCTTACCCTACCAAATCATCAGGCTCAAACCCACCAAAACCGCCAG 1104
Query 1077 CACCTTCACCGGTTGTTTGTGACAAGTCTAACACTTGTCCAGCTAAGTCCACTTGTTGTT 1136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 CGCCTTCACCGGTTGTTTGTGACAAGTCTAACACTTGTCCAGCTAAGTCCACTTGTTGTT 1164
Query 1137 GTCTATATGAGTACAATAGTAAATGCTATAGCTGGGGATGTTGTCCGTATGAGTCAGCCA 1196
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GCCTATATGAGTACAATGGTAAATGCTATAGCTGGGGATGTTGTCCGTATGAGTCAGCCA 1224
Query 1197 CTTGCTGCGATGATGGCTCTAGCTGCTGCCCTCAGTCATACCCTGTCTGCGATTTGAAGG 1256
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1225 CTTGTTGCGATGATGGTTCTAGCTGCTGCCCCCAGTCATACCCTGTCTGCGATTTAAAGG 1284
Query 1257 CCAATACTTGTAGAATGAAGGGAAACAGTCCGTTAAGCATAAAAGCCTTGACACGAGGAC 1316
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1285 CCAATACTTGTAGAATGAAGGGAAACAGTCCGTTAAGCATAAAAGCTTTGACACGAGGAC 1344
Query 1317 CAGCGATTGCGACCACAAAGTCTACAAACGTTCTTGTAAGCAGCGCTTGAGGAGAGATGA 1376
||||||||||||||||||||||||||||| | || || ||||||||||||||||||| |
Sbjct 1345 CAGCGATTGCGACCACAAAGTCTACAAACATGCTAGTGGGCAGCGCTTGAGGAGAGAT-A 1403
Query 1377 A-ACGAACGAAGCTCCGATTTGTTTT 1401
| || ||||||| ||||||||||||
Sbjct 1404 ATACAAACGAAGAACCGATTTGTTTT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69025749375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5