BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479458
Length=2126
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19420.1 | Symbols: ATPEN2, PEN2 | PTEN 2 | chr3:6731376-673... 3031 0.0
> AT3G19420.1 | Symbols: ATPEN2, PEN2 | PTEN 2 | chr3:6731376-6735623
FORWARD LENGTH=2338
Length=2338
Score = 3031 bits (1641), Expect = 0.0
Identities = 1820/1907 (95%), Gaps = 9/1907 (0%)
Strand=Plus/Plus
Query 137 CCTGCTCCTCCTCCTCCTGTTACTGCTGTTGAAGCTGGAACCGATGATTCTCCTAAAGGA 196
||| ||||||||||| ||||||||||| |||||||||| ||||||||| |||||||||
Sbjct 291 CCTCCTCCTCCTCCTGTTGTTACTGCTGCAGAAGCTGGAAGCGATGATTCACCTAAAGGA 350
Query 197 GTTGCATCAAAACTGTCTGCCGCTGGGATATCAACA-TGGGCCAAAAACTTGAAAGTTCC 255
|| ||||||||||| ||||| |||||||| |||| | |||||||||||||||||||||||
Sbjct 351 GTAGCATCAAAACTATCTGCTGCTGGGATTTCAA-ATTGGGCCAAAAACTTGAAAGTTCC 409
Query 256 CCAGCCTTTTGCTTCCACACAAAACGACTCTGCTGTCGAAAATACTGAAAAGTCTGCATT 315
||||||||||||||||||||||||||||||| ||||||||| || || |||||||| ||
Sbjct 410 ACAGCCTTTTGCTTCCACACAAAACGACTCTGGTGTCGAAAACACCGAGAAGTCTGCGTT 469
Query 316 TGCAAAGTTTACTAGTGGGTTAGGGATCCGTTTATCTCCGAAATCTCCTCAACCCAATG- 374
|||||||||||| || ||||||||||| |||||||||||||||||||||||| | ||||
Sbjct 470 TGCAAAGTTTACAAGCGGGTTAGGGATTCGTTTATCTCCGAAATCTCCTCAAACGAATGA 529
Query 375 -A-GACCACGGAAGGTACTTCAAGTGCTACAGAATCCAGTTTCATTGGCACGATTACGAA 432
| ||||| ||||| ||||| |||||||||||||| ||||| ||||| || ||||||||
Sbjct 530 CACTACCACAGAAGGAACTTCGAGTGCTACAGAATCTAGTTTTATTGGGACTATTACGAA 589
Query 433 AGGTTTGGTAGATACATCAAAGAATGCTGTCAAGGCAGTACAGGTCAAGGCTCGACACGC 492
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 590 AGGTTTGGTAGATACATCAAAGAATGCTGTCAAGGCAGTACAAGTCAAGGCTCGACATGC 649
Query 493 TGTATCCCAGAACAAACGAAGATACCAGGAAGGAGGATTTGATTTGGATTTGACGTACAT 552
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 650 TGTATCACAGAACAAACGAAGATATCAGGAAGGAGGATTTGATTTGGATTTGACGTACAT 709
Query 553 AACAGAGAACATAATTGCTATGGGGTTTCCTGCTGGTGATATGAGTTCTGGCTTTTTCGG 612
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 710 AACAGAGAACATCATTGCAATGGGGTTTCCTGCTGGTGATATGAGTTCTGGCTTTTTTGG 769
Query 613 ATATGTCGAGGGTTTCTACCGTAACCAAATGGAAGAAGTTATTAACTTTCTTGAAACTCA 672
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ATATGTTGAGGGTTTCTACCGTAACCAAATGGAAGAAGTTATTAACTTTCTTGAAACTCA 829
Query 673 ACACAAGGGAAAATACAAGGTTTACAATCTTTGTTCAGAGAGGTTGTATGATGTATCATT 732
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 830 ACACAAGGGAAAATACAAGGTTTACAATCTTTGTTCAGAGAGATTGTATGATGTATCATT 889
Query 733 ATTTGAAGGGAAGGTGGCCAGTTTCCCATTTGATGATCATAATTGCCCGCCAATCCATTT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ATTTGAAGGGAAGGTGGCCAGTTTCCCATTTGATGATCATAATTGCCCGCCAATCCATTT 949
Query 793 GGTCACCTCATTCTGCCAAAGTGCATATTCATGGTTAAAGGAGGACATTGAGAACGTTGT 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GGTCACCTCATTCTGCCAAAGTGCATATTCATGGTTAAAGGAGGACATTGAGAACGTTGT 1009
Query 853 GGTTGTTCACTGTAAGGCTGGCATGGCAAGGACAGGGCTTATGATATGTAGTCTTCTGTT 912
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1010 GGTTGTTCACTGTAAGGCTGGCATGGCAAGGACAGGGCTTATGATATGCAGTCTTCTGTT 1069
Query 913 GTATCTGAAGTTCTTTCCGACTGCCGAAGAGTGCATGGACTTCTACAACCAGAAACGATG 972
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1070 GTATCTGAAGTTCTTTCCCACTGCCGAAGAGTGTATGGACTTCTACAACCAGAAACGATG 1129
Query 973 TGTGGATGGAAAAGGACTTGTGCTACCCAGCCAAATCAGATACGTGAAATACTTTGAACG 1032
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 1130 TGTGGATGGAAAAGGACTTGTGCTACCCAGCCAAATTAGATATGTGAAATACTTTGAAAG 1189
Query 1033 AATTTTGACCTACTTCAACGGGGAAAACCAACCAGGCCGTAGGTGTATGCTAAGGGGATT 1092
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1190 AATTTTGACCTACTTCAACGGTGAAAACCAACCAGGCCGTAGGTGTATGCTTAGGGGATT 1249
Query 1093 CCGGCTCCATAGGTGTCCCTATTGGATCAGGCCATCCATCACTATTTCAGATCACAATGG 1152
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1250 CCGGCTCCATAGGTGTCCCTATTGGATTAGGCCATCCATCACTATTTCAGATCACAATGG 1309
Query 1153 TGTTCTCTTTACCACGAAAAAGCATCCTCGGACCAAGGATCTCTCGCCTGAAGACTTTTG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TGTTCTCTTTACCACGAAAAAGCATCCTCGGACCAAGGATCTCTCGCCTGAAGACTTTTG 1369
Query 1213 GTTCAGTGCCCCAAAGAAAGGGGTTATGGTCTTTGCCTTACCCGGAGAGCCAGGTCTAAC 1272
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1370 GTTCAGTGCCCCAAAGAAAGGGGTTATGGTCTTTGCCTTACCTGGAGAGCCAGGTCTAAC 1429
Query 1273 AGAATTGGCTGGGGACTTCAAAATCCACTTTCATGACCGCCAAGGAGATTTTTACTGCTG 1332
||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1430 AGAATTGGCTGGGGACTTCAAAATCCAATTTCATGACCGGCAAGGAGATTTCTACTGCTG 1489
Query 1333 GTTAAACACGACAATGATGGAAAATAGAGTGATCCTAAAAACCAGTGAGCTTGACGGGTT 1392
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1490 GTTAAACACGACAATGATGGAAAATAGAGTGATCCTAAAAACCAGTGAGCTTGATGGGTT 1549
Query 1393 TGAAAAGAGGAAGCTACCGTCGCCTGGATTTATGGTTGAAGTTGTTCTTGCTGATATAAA 1452
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1550 TGACAAGAGGAAGCTACCATCGCCTGGATTTATGGTTGAAGTTGTTCTAGCTGATATAAA 1609
Query 1453 TGCAACAATTCCC-ACGAACCCTAGTTCTGAAACAGCATCCAAAACACCGGAAGAAACTT 1511
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TGCAACAAT-CCCTACGAACCCTAGTTCTGAAACAGCATCCAAAACACCGGAAGAAACTT 1668
Query 1512 CAGCAGCTAATTCTTCCCCTGTAGACGGCTCTGCATCGGTTCCAGGACCCAATAAAGAAA 1571
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1669 CAGCAGCTAATTCGTCCCCTGTAGACGGCTCTGCATCGGTTCCAGGACCCGATAAAGAAA 1728
Query 1572 CAGAGAATCCTGATAAAGACGATGTGTTCTCTGATAACGAAGGAGACTCAACTGGCCCGA 1631
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1729 CAGAGAATCCTGATAAGGACGATGTGTTCTCTGATAACGAAGGAGACTCAACTGGCCCGA 1788
Query 1632 CGAAAACCACATCATCGGCTTCTTCTCAAACCCCAGAAGCCAAACAGAGGGCAGATGAAA 1691
| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1789 CCAAAACCACATCATCGGCTTCTTCTCAAACCCCAGAAGCCAAAAAGAGCGCAGATGAAA 1848
Query 1692 CCTCTGCTCTGACTAAAGCGACTGAGAAAGTGTCTATTTCTGGAAACAAGGGATCATCAC 1751
|| ||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1849 CCGCTGTTCTGACTAAAGCGACAGAGAAAGTGTCTATTTCTGGAAACAAAGGATCATCAC 1908
Query 1752 AGCCGGTGCAAGGAGGAACTGTTAGCAAGGGTGAAGCAACAGAGAAACCCTCTGGGGCTG 1811
||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1909 AGCCGGTGCAAGGAGTAACTGTGAGCAAGGGTGAAGCAACAGAAAAACCCTCTGGGGCTG 1968
Query 1812 GGGTCAATGCTTCTTCAAGCTCAGAGAGTGAGTTCAAGGTAATGGCGGCTGATGCATCTG 1871
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1969 GGGTCAATGCTTCTTCAAGCTCAGAGAGTGAGTTCAAGGTTATGGCGGCTGATGCATCTG 2028
Query 1872 TGTTCTCATTTGGAGATGAAGACGACTTTGAAAGCGATTGAAGAAAGCTGATAAAAAGCA 1931
||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct 2029 TGTTCTCATTTGGAGATGAAGACGACTTTGAAAGCGATTGAAGAAAGATAATCAAAAGCA 2088
Query 1932 AGAAG-ATGTGTACATAAAAAACAGGGAATTTTAAATCAATCAGATGATGGAATCCATTT 1990
|||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 2089 GGAAGGATGTGTACATAAAAA-CAGGGAATGGTAAATCAATCAGATGATGGAATCCATTT 2147
Query 1991 ATTGTGTTGTGGTTTTGTGTTGTGATGTTGAATTCCACGGTCTTTTT 2037
||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 2148 ATTGTGTTGTGGTTTCGTGTTGTGATGTTGAATTCTACGGTCTTTTT 2194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105421144500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5