BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479462
Length=1942
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19480.1 | Symbols: | D-3-phosphoglycerate dehydrogenase | ... 3101 0.0
AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenas... 826 0.0
AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporte... 259 7e-68
> AT3G19480.1 | Symbols: | D-3-phosphoglycerate dehydrogenase
| chr3:6752531-6754785 FORWARD LENGTH=1961
Length=1961
Score = 3101 bits (1679), Expect = 0.0
Identities = 1864/1953 (95%), Gaps = 13/1953 (1%)
Strand=Plus/Plus
Query 1 CTCTACTCTGTTGCTGACGATACATACACCTTTACTTACACTATATTCCCGCCACCACGA 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||
Sbjct 1 CTCTACTCTGTTGCTGACGATACATACACCTTTACTTACATTATATTCCCGCCATCGCGA 60
Query 61 TGGCGACGTCTCTGAATCTATCATCGGTC-T-T-CTCCTCCTCAAGGCTCGTCACCACTC 117
|||||||||||||||||||||||||| || | | ||||||||||||||||||||||||||
Sbjct 61 TGGCGACGTCTCTGAATCTATCATCGATCTTCTCCTCCTCCTCAAGGCTCGTCACCACTC 120
Query 118 CCTCCTCTGTTTTTCCCATCCGTCAGAGACGACGGATCATCCTCGTTACGTCTTCTTCTT 177
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 CCTCCTCTGTTTTTCCCATCCGTCAGAGGCGACGGATCATCCTCGTTACGTCTTCTTCTT 180
Query 178 CC------GGAGGAAAACCGACTATTCTCGTGACGGAGAAGCTAGGCCAAGCGGGGATTG 231
|| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 181 CCGGAGGTGGAGGAAAACCGACGATTCTCGTAACGGAGAAGCTAGGCCAAGCGGGGATCG 240
Query 232 ATCTGCTTAAGAAGTACGCTAATGTGGATTGCTCTTATGATCTGAGTCTCGAGGAGCTTT 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTGCTTAAGAAGTACGCTAATGTGGATTGCTCTTATGATCTGAGTCTCGAGGAGCTTT 300
Query 292 GCACGAAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACGAAGGTTGGGAGAG 351
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 GTACGAAGATCTCTCTTTGTGATGCGCTCATCGTCAGGAGTGGTACCAAGGTTGGGAGAG 360
Query 352 ATGTGTTTGAATCATCGCGTGGGAGGCTTAAGGTTGTGGGACGCGCTGGTGTTGGGATTG 411
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 ATGTGTTTGAATCGTCGCGTGGGAGGCTTAAGGTTGTTGGACGCGCTGGTGTTGGGATTG 420
Query 412 ATAATGTTGATTTGGCGGCTGCCACGGAGTATGGTTGTTTGGTTGTCAATGCTCCGACTG 471
|||| || ||||||||||| || || |||||||| ||||||||||| |||||||||||||
Sbjct 421 ATAACGTCGATTTGGCGGCGGCGACTGAGTATGGGTGTTTGGTTGTTAATGCTCCGACTG 480
Query 472 CTAACACGGTGGCTGCTGCTGAGCACGGGATTGCGCTTTTGACCGCCATGGCTAGAAATA 531
| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 481 CGAACACTGTGGCTGCTGCTGAACACGGAATTGCGCTTTTGACCGCCATGGCTAGAAACA 540
Query 532 TCGCTCAAGCTGATGCTTCTATCAAAGCTGGCAAATGGACGAGAAACAAATATGTAGGTG 591
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TTGCTCAAGCTGATGCTTCTATCAAAGCTGGCAAATGGACGAGAAACAAGTATGTAGGTG 600
Query 592 TTTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTG 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTCACTTGTGGGGAAGACTCTTGCTGTTCTTGGTTTTGGTAAAGTTGGATCAGAGGTTG 660
Query 652 CTAGACGAGCCAGGGGACTAGGGATGCATGTCATTACACATGATCCTTATGCACCAGCGG 711
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 661 CTAGACGAGCCAGGGGACTTGGTATGCATGTCATTACACATGATCCTTATGCACCAGCGG 720
Query 712 ATCGTGCACGAGCCATTGGTGTGGAGCTTGTTAGTTTTGAAGTAGCTATTTCAACTGCAG 771
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 ATCGTGCACGAGCTATTGGTGTGGAGCTTGTTAGTTTTGAAGTAGCTATTTCAACTGCTG 780
Query 772 ACTTCATCTCTTTGCATTTGCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGA 831
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACTTCATCTCTTTGCATCTGCCTCTTACTGCTGCTACTTCGAAGATGATGAATGATGTGA 840
Query 832 CCTTTTCGATGATGAAGAAAGGAGTGCGTATTGTCAATGTTGCTCGTGGTGGAGTTATTG 891
||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 841 CCTTTGCGATGATGAAGAAAGGAGTCCGTATTGTTAATGTTGCTCGTGGTGGAGTTATTG 900
Query 892 ATGAGGAAGCTCTTTTGAGAGCGCTTGATTTGGGTATTGTTGCTCAGGCAGCTCTTGATG 951
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 901 ATGAGGAAGCTCTTTTGAGAGCGCTTGACTCGGGTATTGTTGCTCAGGCAGCTCTTGATG 960
Query 952 TTTTCACAGTGGAGCCACCTGTTAAAGACAATAAGTTGGTGCTACATGAGAGTGTTACTG 1011
|||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| ||||
Sbjct 961 TTTTTACAGTAGAGCCACCTGTTAAAGATAATAAGTTGGTGTTACATGAGAGTGTCACTG 1020
Query 1012 CCACGCCTCATCTTGGTGCTAGTACCATGGAGGCTCAGGAAGGAGTGGCTATCGAAGTCG 1071
|||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1021 CCACACCTCATCTTGGTGCTAGTACTATGGAGGCTCAGGAAGGAGTGTCTATCGAAGTCG 1080
Query 1072 CAGAAGCTGTTATTGGTGCTTTGAGAGGAGAACTTGCTGCTACGGCTGTCAATGCACCGA 1131
|||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1081 CAGAAGCTGTTATTGGAGCTTTGAGAGGAGAACTTGCTGCTACCGCGGTCAATGCACCAA 1140
Query 1132 TGGTTCCACTAGAGGTATTGAGGGAGCTGAAACCGTATGTTGTGCTTGCTGAGAAGCTTG 1191
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1141 TGGTTCCACTAGAGGTATTGAGGGAGCTGAAGCCGTATGTTGTACTTGCTGAGAAGCTTG 1200
Query 1192 GTAGGCTGGCTGTACAATTGGTTACCGGTGGAAGCGGTGTGAATGCTGTGAAAGTGACTT 1251
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1201 GGAGGCTGGCTGTACAATTGGTAACTGGTGGAAGCGGTGTGAATGCTGTGAAAGTGACTT 1260
Query 1252 ATGCTTCTTCCAGAGCTCCTGATGATCTCGACACTAGACTTCTCCGTGCCATGGTCATAA 1311
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 ATGCTTCTTCCAGAGCTCCTGATGATCTCGACACTAGACTTCTCCGAGCCATGGTCATAA 1320
Query 1312 A-AGGACTCATCGAACCCATTTCCAGCGTATTCATAAATCTGGTTAACTCTGATTACATT 1370
| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1321 AGGGGA-TCATCGAACCCATTTCCAGCGTATTCATAAATCTGGTTAACTCCGATTATATT 1379
Query 1371 GCCAAACAACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGATGGCTCACCCGAG 1430
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1380 GCCAAACAACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGACGGCTCACCTGAG 1439
Query 1431 AATCCAATTGAATACATAACTGTTCGGATAGCAAACGTGGAATCAAGATTCGCCAGCGCG 1490
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1440 AATCCAATTGAATACATAACTGTTCGGATAGCAAACGTGGAATCAAGATTTGCCAGCGCT 1499
Query 1491 TTATCAGAGTCCGGTGAGATCAAAGTAGAAGGAAGGGTGAAACAAGGGGTTCCAAGTCTA 1550
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1500 TTATCAGAGTCCGGTGAGATCAAAGTAGAAGGCAGAGTGAAACAAGGGGTTCCAAGTCTT 1559
Query 1551 ACCAAAGTGGGCTTATTTGGAGTGGATGTGAGTCTAGAAGGGAGTGTGATTCTGTGCAGG 1610
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1560 ACCAAAGTCGGATTATTTGGAGTGGATGTGAGTTTAGAAGGGAGTGTGATTCTGTGCAGG 1619
Query 1611 CAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATCTTAGGAGATGAAAACGTG 1670
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 CAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATCTTAGGAGATGAAAACGTC 1679
Query 1671 AACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCCAGGCAAGCAAGCGGTAATGGCAATT 1730
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1680 AACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCCAGGCAAGCAAGCTGTGATGGCAATT 1739
Query 1731 GGAGTAGATGAACAACCAAGCAAAGAAACTTTAAAGAAAATCGGAGACATTCCTGCCATT 1790
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1740 GGAGTAGATGAACAACCAAGCAAAGAAACTTTGAAGAAAATCGGAGACATTCCTGCCATT 1799
Query 1791 GAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACATAAGAAAAA 1850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACATAAGAAAAA 1859
Query 1851 ACTC-GAAATAGACATAATCTTAAATGATTATTTATTCTGTACTAATGATACAAATCGAG 1909
|||| || || || ||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1860 ACTCAGAGATCGATATAATCTTAAATGATGATTTATTCTGTACTAATGATACAA-TCGAG 1918
Query 1910 TGTACATGAAACAAATTACACAGTTGATTTTTT 1942
|||||||||||||||||||| ||||||||||||
Sbjct 1919 TGTACATGAAACAAATTACATAGTTGATTTTTT 1951
> AT4G34200.1 | Symbols: EDA9 | D-3-phosphoglycerate dehydrogenase
| chr4:16373819-16376622 REVERSE LENGTH=2095
Length=2095
Score = 826 bits (447), Expect = 0.0
Identities = 1269/1661 (76%), Gaps = 76/1661 (5%)
Strand=Plus/Plus
Query 195 ATTCTCGTGACGGAGAAGCTAGGCCAAGCGGGGATTGATCTGCTT--AAGAAGTACGCTA 252
||||||||| |||||||||| || | || || ||| | || || | || || ||| |
Sbjct 251 ATTCTCGTGGCGGAGAAGCTCGGTGACGCTGGTATTAAGCT-TTTGGAGGATGT-CGCGA 308
Query 253 ATGTGGATTGCTCTTATGATC-TGAGT-CTCGAGGAGCTTTGCACGAAGATCTCTCTTTG 310
|||| || || || ||| | | ||| | || |||||||| || |||||||| || ||
Sbjct 309 ATGTCGACTGTTCGTAT-AACATGACTCCT-GAGGAGCTCAACATTAAGATCTCGCTCTG 366
Query 311 TGATGCGC-TCATCGTCAGGAGTGGTACGAAGGTTGGGAGAGATGTGTTTGAATCATCGC 369
||| || | | ||||| |||||||| || |||||||| | || ||||| ||||| || |
Sbjct 367 TGACGC-CTTGATCGTGAGGAGTGGGACTAAGGTTGGCCGTGAGGTGTTCGAATCGTCTC 425
Query 370 GTGGGA-GGCTTAAGGTTGTGGGACGCGCTGGTGTTGGGATTGATAATGTTGATTTGGCG 428
||| |||| |||||||| || ||||||||||||||||| || || || ||| | | |
Sbjct 426 -ACGGACGGCTCAAGGTTGTTGGTCGCGCTGGTGTTGGGATCGACAACGTGGATCT-GAG 483
Query 429 -GCTGCCACGGAGTATGGTTGTTTGGTTGTCAATGCTCCGACTGCTAACACGGTGGCTGC 487
|| || ||||||| ||| |||||||||||||| |||||||| || |||||| | |||||
Sbjct 484 TGCAGCGACGGAGTTTGGGTGTTTGGTTGTCAACGCTCCGACGGCGAACACGATCGCTGC 543
Query 488 TGCTGAGCACGGGATTGCGCTTTTGACCGCCATGGCTAGAAATATCGCTCAAGCTGATGC 547
||||||||||| || || ||| || ||||||||||||| || | ||||||||||||||
Sbjct 544 CGCTGAGCACGGAATCGCTCTTATGGCCGCCATGGCTAGGAACGTAGCTCAAGCTGATGC 603
Query 548 TTCTATCAAAGCTGGCA-AATGGACGAGAAACAAATATGTAGGTGTTTCACTTGTGGGGA 606
||| | || ||||| | | |||| ||| ||||| ||||||||||||||||||||||| |
Sbjct 604 GTCTGTTAAGGCTGG-AGAGTGGAAGAGGAACAAGTATGTAGGTGTTTCACTTGTGGGAA 662
Query 607 AGACTCTTGCTGTTCTT-GGTTTTGGTAAAGTT-GGATCAGAGGTTGCTAGACGAGCCAG 664
|||| ||||| | | || || || || |||||| ||| | || |||||| | || || |
Sbjct 663 AGACCCTTGCAG-TGTTGGGATTCGGGAAAGTTGGGA-CGGAAGTTGCTCGTCGTGCTAA 720
Query 665 GGGACTAGGGATGCATGTCATTACACATGATCCTTATGCACCAGCGGATCGTGCACGA-G 723
||| || || |||| ||||||| | |||||||| ||||| ||||| || ||||||| | |
Sbjct 721 GGGTCTTGGTATGCGTGTCATTGCTCATGATCCCTATGCCCCAGCAGACCGTGCAC-ACG 779
Query 724 CCATTGGTGTGGAGCTT-GTTAGTTTTGAAGTAGCTATTTCAACTGCAGACTTCATCTCT 782
|||||||||| || ||| || || ||||| | ||| || | || || || ||||| |||
Sbjct 780 CCATTGGTGTTGA-CTTAGTGAGCTTTGATGAAGCCCTTGCCACCGCGGATTTCATTTCT 838
Query 783 -TTGCATTTGCCTCTTACTG-CTGCTACTTCGAAGATGA-TGAATGATGTGACCTTTTCG 839
|| ||| |||||||||| | | | || |||||||| | | || || | |||||| |
Sbjct 839 CTT-CATATGCCTCTTAC-GCCAACAACATCGAAGAT-ACTAAACGACGAAACCTTTGCC 895
Query 840 ATGATGAAGAAAGGAGTGCGTATTGTCAATGTTGCTCGTGGTGGAGTTATTGATGAGGAA 899
| |||||||| ||||| || ||||| |||||||||||||| || || || || || ||
Sbjct 896 AAAATGAAGAAGGGAGTTCGAATTGTTAATGTTGCTCGTGGAGGTGTCATAGACGAAGAT 955
Query 900 GCTCTT-TTGAGAGCGCTTGAT-TTGGGTATTGTTGCTCAGGCAGCTCTTGATGTTTTCA 957
|| || ||||||| || ||| | ||||||||||| ||||| || |||||||||||||
Sbjct 956 GC-GTTAGTGAGAGCTCTGGATGCT-GGTATTGTTGCGCAGGCTGCACTTGATGTTTTCA 1013
Query 958 -CAGTGGAGCCACCTGTTAAAGACAATAAGTTGGTGCTA-CATGAGAGTGTTACTGCCAC 1015
|| ||||| || | |||||| | ||| | |||| | || ||||| || |||| ||
Sbjct 1014 CCA-AAGAGCCTCCGGCTAAAGATAGCAAGCTCGTGC-AGCACGAGAGGGTCACTGTGAC 1071
Query 1016 GCCTCATCTTGGTGCTAGTACCATGGAGGCTCAGGAAGGAGTGGCTATCGAAGTCGCAGA 1075
||||||||||| ||||||||||||||||||||||||||||| || |||||| | || ||
Sbjct 1072 ACCTCATCTTGGAGCTAGTACCATGGAGGCTCAGGAAGGAGTTGCCATCGAAATTGCTGA 1131
Query 1076 AGCTGTTATTGGTGCTTTGAGA-GGAGAACTTGCTGCTACGGCTGTCAATGCACCGATGG 1134
||||||| |||| ||| ||| | ||||| ||||||||||| || ||||||||||| ||||
Sbjct 1132 AGCTGTTGTTGGAGCTCTGA-ATGGAGAGCTTGCTGCTACTGCAGTCAATGCACCTATGG 1190
Query 1135 TTCCA-CTAGAGGTAT-TGAGGGAGCTGAAACCGTATGTTGTGCTTGCTGAGAAGCTTGG 1192
|| | || ||||| | ||| ||||||||||| ||||| ||||| || ||||| || ||
Sbjct 1191 TTTCTGCT-GAGGT-TCTGACCGAGCTGAAACCATATGTGGTGCTAGCCGAGAAACTAGG 1248
Query 1193 TAGGCTGGCTGTACAATTGGTTACCGGTGGAAGCGGTGTGAATG-CTGTGAAAGTGACTT 1251
|| ||||| || ||| |||| |||| |||||||||||||| | | |||| | || |
Sbjct 1249 AAGACTGGCAGTGCAACTGGTGGCCGGAGGAAGCGGTGTGAAAAAC-GCGAAAATCACAT 1307
Query 1252 ATGCTTCTTCCAGAGCTC-CTGATGATCTCGACACTAGACTTCTCCGTGCCATGGTCATA 1310
| || || | ||||| | |||||||||| ||||| ||||||||||| |||||| |||
Sbjct 1308 ACGCCTCAGCAAGAGC-CACTGATGATCTTGACACCAGACTTCTCCGAGCCATGATCACC 1366
Query 1311 AAAGGACTCATCGAACCCATTTCC-AGCGTAT-TCATAAATCTGGTTAACTCTGATTACA 1368
|| ||| ||||||| || || || | ||||| | | ||| |||| ||| |||||| ||
Sbjct 1367 AAGGGAATCATCGAGCCAATCTCTGA-CGTATATG-TCAATTTGGTCAACGCTGATTTCA 1424
Query 1369 TTGCCAAACA-ACGTGGAGTCAAAATCTCAGAAGAACGTATGGTTCTAGATGGCTCACCC 1427
||||| || | | || ||| | ||||||| |||||| || || | ||||| |||||
Sbjct 1425 CAGCCAAGCAGA-GAGGTCTCAGACTCTCAGAGGAACGTGTGCTTTTGGATGGTTCACCA 1483
Query 1428 GAGAATCCAATTGAATACA-TAACTGTTCGGATA-GCAAACGTGGAATC-AAGATTCGCC 1484
|||| ||| ||| | ||| ||||||||| | || |||| ||||| || || |||||||
Sbjct 1484 GAGAGCCCA-TTGGAGACAATAACTGTTCAGCTAAGCAAT-GTGGAGTCCAA-ATTCGCC 1540
Query 1485 AGCGCGTTATCAGAGTCCGGTGAGATCAAAGTAGAAGGAAGGGTGAAACAAGGGGTTCCA 1544
|| | | || || || || ||| | ||||| ||||||| ||| ||| | || || ||
Sbjct 1541 AGTTCCCTGTCTGAATCAGGAGAGGTTAAAGTGGAAGGAAAGGTTAAAGACGGAGTCCCG 1600
Query 1545 -AGTCTAACCAAAG-TGGGCT-TATTTGGAG-TGGATGTGAGTCTAGAAGGGAGTGTGAT 1600
| | | || |||| | || | | |||| || | ||||| | ||| ||||| ||| | ||
Sbjct 1601 CATT-TGAC-AAAGGTTGGATCT-TTTG-AGGTCGATGTAACTCTTGAAGGTAGTATCAT 1656
Query 1601 TCTGTGCAGGCAAGTAGATCAGCCTGGGATGATCGGTAAAGTTGCTAGCATC-TTAGGAG 1659
||||||||||| || ||||| ||||| |||||||| | || | |||||| || ||||
Sbjct 1657 ACTGTGCAGGCAGGTGGATCAACCTGGTATGATCGGGACTGTCGGAAGCATCCTT-GGAG 1715
Query 1660 A-TGAAAACGTGAACGTGAGCTTCATGAGCGTCGGTCGAATCGCTCC-AGGCAAGCAAGC 1717
| | || || || || | |||||||||||| || |||| || || ||| ||||||||
Sbjct 1716 AGTCTAAT-GTCAATGTTAACTTCATGAGCGTTGGGAGAATTGCACCGAGG-AAGCAAGC 1773
Query 1718 GGTAATGGCAATTGGAGTAGATGAACA-ACCAAGCAAAGAAACTTTAAAGAAAATCGGAG 1776
| | ||||| |||||||||||||| || |||||||||||| || | ||||| || || |
Sbjct 1774 GATTATGGCGATTGGAGTAGATGA-CATACCAAGCAAAGAGACACTGAAGAAGATTGGGG 1832
Query 1777 ACATTCCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAG 1817
| ||||| || |||| ||||| ||||||||||| || |||
Sbjct 1833 AAATTCCAGCGGTTGAGGAGTTCGTTTTCCTCAAGCTCTAG 1873
> AT3G19490.1 | Symbols: ATNHD1, NHD1 | sodium:hydrogen antiporter
1 | chr3:6754615-6758261 REVERSE LENGTH=2125
Length=2125
Score = 259 bits (140), Expect = 7e-68
Identities = 155/162 (96%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 1782 CCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACA 1841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2125 CCTGCCATTGAAGAGTTTGTTTTCCTCAAACTATAGGTTAATACTTTACATGGATGCACA 2066
Query 1842 TAAGAAAAAACTC-GAAATAGACATAATCTTAAATGATTATTTATTCTGTACTAATGATA 1900
||||||||||||| || || || ||||||||||||||| |||||||||||||||||||||
Sbjct 2065 TAAGAAAAAACTCAGAGATCGATATAATCTTAAATGATGATTTATTCTGTACTAATGATA 2006
Query 1901 CAAATCGAGTGTACATGAAACAAATTACACAGTTGATTTTTT 1942
||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 2005 CAA-TCGAGTGTACATGAAACAAATTACATAGTTGATTTTTT 1965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96184244220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5