BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479466
Length=2578
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19510.1 | Symbols: HAT3.1 | Homeodomain-like protein with R... 3542 0.0
AT3G19530.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 87.9 4e-16
> AT3G19510.1 | Symbols: HAT3.1 | Homeodomain-like protein with
RING/FYVE/PHD-type zinc finger domain | chr3:6762764-6766588
REVERSE LENGTH=2769
Length=2769
Score = 3542 bits (1918), Expect = 0.0
Identities = 2269/2428 (93%), Gaps = 66/2428 (3%)
Strand=Plus/Plus
Query 104 AATGCATAGAGCAGCCAGTAAACGGTTAACTAGGAGTAGTGGATCTGGTTTGAAGCAGAC 163
|||| ||| ||||| ||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 156 AATGTATAAAGCAGTAAGTAAGCGGGTAACTAGAAGTAGTGGATCTGGTTTGAAGCAGAC 215
Query 164 AAA--T-G----T-----AGAGACTAATCCAACTGTTGACAAAGTATCTGAACAAGGCCA 211
||| | | | ||||| || |||||||||||||| ||||||||||||||| |
Sbjct 216 AAATGTAGATAATGGAGGAGAGATTAGTCCAACTGTTGACAGAGTATCTGAACAAGG-C- 273
Query 212 AAAT--TCAGAGGCAGGGAGTCACATGCCAAATGATGCAAATGAAAATGGACATTTGCAT 269
|||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||
Sbjct 274 AAATCATCAGAGGCAGGGAGTCACATGCCAACTGATGCAAACGGAAATGGACATTTGCAT 333
Query 270 CATGATATTATGGAAAATGGAAAGGGGAATGAACAACTGAAACCAACCCCTCAAACCGGG 329
||||| |||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 334 CATGAGATTATGGATCATGGAAAGGGGAATGAAGAACAGAAACCAACCCCTCAAACCGTG 393
Query 330 AAGAAGAGA-TCTAGTACTAATACCAAAATTTCAGGGTCGCATCGTGAACTTGTCATTGG 388
|||||| || |||| ||| ||||||||| |||||||||| |||||||| |||||||| ||
Sbjct 394 AAGAAG-GATTCTAATACCAATACCAAATTTTCAGGGTCTCATCGTGAGCTTGTCATCGG 452
Query 389 TCTTCCTTGCCACGGGCAATTTGAAAT-C-C-ATCGGTCCAGGTCATCTACGAGTTCGAA 445
||||||||||| || ||||||||||| | | | ||||||||| ||||||||||||||||
Sbjct 453 TCTTCCTTGCCGTGGACAATTTGAAATCCACAACCGGTCCAGGGCATCTACGAGTTCGAA 512
Query 446 GAGGTTAGGAGGAGGTGGAGAAAGGAATGTGTTGTTTTCAAGTCACAAGGGAGCTCAGAG 505
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 513 GAGGTTAGGAGGAGGTGGAGAAAGGAATGTGTTGTTTGCAAGTCACAAGAGAGCTCAGAG 572
Query 506 ATCTAAGGAAGATGCTGGATCATCTTCGGTTGCTGCTAATTCCACACCTGTAGGTCGACC 565
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 573 ATCTAAGGAAGATGCTGGACCATCTTCGGTTGTTGCTAATTCCACACCTGTAGGTCGACC 632
Query 566 AAAGAAAAGGAATAAGACTATGAAGAAAGGAGAAGTTAGAGAAGATGATGAGTACACAAG 625
|||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 633 AAAGAAAAAGAATAAGACTATGAACAAAGGACAAGTTAGAGAAGATGATGAGTACACAAG 692
Query 626 AATCAAAAAGAAACTTCGATACTTTCTAAACCGGATTAGCTATGAGCAAAACCTAATTGA 685
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 693 AATCAAAAAGAAACTTCGATACTTTCTAAACCGGATTAACTATGAGCAAAGCCTAATTGA 752
Query 686 CGCCTATTCTTTAGAAGGCTGGAAAGGTTCAAGCCTGGAAAAGATAAGGCCAGAGAAAGA 745
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CGCCTATTCGTTAGAAGGCTGGAAAGGTTCAAGCCTGGAAAAGATAAGGCCAGAGAAAGA 812
Query 746 GCTTGAACGAGCCACAAAGGAAATTTTGCGGCGCAAGCTTAAAATTAGAGATCTTTTTCA 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GCTTGAACGAGCCACAAAGGAAATTTTGCGGCGCAAGCTTAAAATTAGAGATCTTTTTCA 872
Query 806 GCACCTTGACACACTCTGTGCTGAAGGAAGCCTTCCAGAGTCTTTATTTGATTCTGATGG 865
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 873 GCACCTTGACACACTCTGTGCTGAAGGAAGCCTTCCAGAGTCTTTATTTGATACTGATGG 932
Query 866 AGAGATTTCTAGCGAGGATATCTTTTGTGCAAAATGTGGTTCAAAGGACTTGTCTGTTGA 925
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 933 AGAGATTTCTAGCGAGGATATCTTCTGTGCAAAATGTGGTTCAAAGGACTTGTCTGTTGA 992
Query 926 TAATGATATCATACTATGTGATGGGTTTTGCGATCGAGGCTTTCACCAATACTGTCTTGA 985
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TAATGATATCATACTATGCGATGGGTTTTGCGATCGAGGCTTTCACCAATACTGTCTTGA 1052
Query 986 ACCACCTCTGCGGAAAGAAGATATTCCTCCGGATGATGAGAGTTGGCTATGCCCCGGATG 1045
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1053 ACCACCTCTGCGGAAAGAAGATATTCCTCCGGATGATGAGGGTTGGCTATGCCCCGGATG 1112
Query 1046 TGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAACTTTT-GG 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1113 TGATTGCAAAGATGACAGCTTGGACTTGCTTAATGATTCTTTAGGGACAAAA-TTTTCGG 1171
Query 1105 TCAGCGACAGTTGGGAGAAAATATTTCCTGAGGCTGCAGCAGCGTTGGCTGGTGGAGGTC 1164
|||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||
Sbjct 1172 TCAGCGACAGTTGGGAGAAAATATTTCCTGAGGCAGCAGCAGCGCTGGTTGGTGGAGGTC 1231
Query 1165 AAAATCTTGACTGTGATCTTCCTTCagatgattctgatgatgaagagtatgatccagatg 1224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 AAAATCTTGACTGTGATCTTCCTTCAGATGATTCTGATGATGAAGAGTATGATCCAGATT 1291
Query 1225 gtttgaatgataatgaaaatgatgaagatggcagtgatgacaatgaagaatctgagaacg 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GTTTGAATGATAATGAAAATGATGAAGATGGCAGTGATGACAATGAAGAATCTGAGAACG 1351
Query 1285 aagatgaTAGTTCTGATGAATCTGAAT-CTACATCTGCATCTGACAAAATGATTGAGTCA 1343
|||||| ||||||||||||| |||||| | ||||||||||||||| ||||||||||||||
Sbjct 1352 AAGATGGTAGTTCTGATGAAACTGAATTC-ACATCTGCATCTGACGAAATGATTGAGTCA 1410
Query 1344 TTTAAAGAAGGGAAAGATATAATGAAAGATATAATGGCCCTTCCATCTGATGATTCTGAG 1403
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1411 TTTAAAGAAGGGAAAGATATAATGAAAGATGTAATGGCCCTTCCATCTGATGATTCTGAG 1470
Query 1404 GATGATGACTATGATCCTGATGCCCCGACTTGTGATGAAGATAAAGAAAGTTCAAATTCT 1463
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1471 GATGATGACTATGATCCTGATGCCCCGACTTGTGATGATGATAAAGAAAGTTCAAATTCT 1530
Query 1464 GATTGTACATCAGACTA-TGAAGATCTTGAAACTTCTTTCAAAGGAGATGAGTCTAATCA 1522
||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1531 GATTGTACATCAGAC-ACTGAAGATCTTGAAACTTCCTTCAAAGGAGATGAGACTAATCA 1589
Query 1523 GCAAGCTGAAGATACACCATTTGAGGATCCTGGCAGACAGACGTCTCAGCTCCC-GTGTG 1581
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 1590 GCAAGCTGAAGATACACCACTTGAGGATCCTGGCAGACAGACGTCTCAGCTCCAAG-GTG 1648
Query 1582 ATGCAATTTTAGAGTCAGATGTTGGGCTTGATGATGGTCCTGCCGGTGTATCCAGAAGGA 1641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1649 ATGCAATTTTAGAGTCAGATGTTGGGCTTGATGATGGTCCTGCCGGTGTATCCAGAAGGA 1708
Query 1642 GGAATGTTGAAAGACTGGATTACAAAAAGTTGTATAATGAGGAATATGACAATGTTCCGA 1701
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1709 GGAATGTTGAAAGGCTGGATTACAAAAAGTTGTATGATGAGGAATATGACAATGTTCCGA 1768
Query 1702 CTTCGTCAAGTGATGATGACGATTGGGATAAAACTGCAAGAATGGGAAAAGAAGATTCCG 1761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 CTTCGTCAAGTGATGATGACGATTGGGATAAAACTGCAAGAATGGGAAAAGAAGATTCCG 1828
Query 1762 AGTCAGAAGATGAAGGGGACATTGTACCTCTGAAACAGTCTTCAAATGCAGAAGATCATA 1821
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1829 AGTCGGAAGATGAAGGGGACACTGTACCTCTGAAACAGTCTTCAAATGCAGAAGATCATA 1888
Query 1822 CTTCTAAGAAACCTAGACGGAAGTCGAAAAGGACAGATAAAAAGGATACCTTGGAAGTGC 1881
|||||||||||| || |||||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 1889 CTTCTAAGAAACTTATACGGAAGTCGAAAAGGGCAGATAAAAAGGATACCTTAGAAATGC 1948
Query 1882 CACAAGAATGTCCTGGAGAAAATGGTGGTTCTGGTGAAATTGAAAAAAGCAGCTCTTCAG 1941
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949 CACAAGAAGGTCCTGGAGAAAATGGTGGTTCTGGTGAAATTGAAAAAAGCAGCTCTTCAG 2008
Query 1942 CAAATAAACAGACAGATCCCAAAACTCAGAGATTATACATATCTTTTCAAGAAAATCGAT 2001
|| |||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||
Sbjct 2009 CATGTAAACAGACAGATCCCAAAACTCAGAGACTGTACATATCTTTTCAAGAGAATCAAT 2068
Query 2002 ATCCAGACAAAGCCACGAAGGAGAGCTTAGCCAAAGAGCTACAAATGACAGTTACGCAAG 2061
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2069 ATCCAGACAAAGCCACGAAGGAGAGCTTAGCCAAAGAGCTACAAATGACAGTTAAGCAAG 2128
Query 2062 TTAATAACTGGTTTAAGAATAGGCGTTCGTCGATAAACAGCAAACCTTTAGTTTCTGAGG 2121
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 2129 TTAATAACTGGTTTAAGCATAGGCGTTGGTCGATAAACAGCAAACCTTTAGTTTCAGAGG 2188
Query 2122 AAAATGTCGAGAAGTTAAAAACAGGTAAGGAAGGTGAATGTGAGACATCTGTTGCTGGAA 2181
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2189 AAAATGTCGAGAAGTTAAAAACAGGCAAGGAAGGTGAATGTGAGACATCTGTTGCTGGAA 2248
Query 2182 GTAGCGTACAAACTATGGAAACTGAGTCAGTTGCAGAGAATAAGAGCAGGGCATCGGAAT 2241
||||| ||||||||||||||| ||||||||||||||||| | | || |
Sbjct 2249 GTAGCAAACAAACTATGGAAACCGAGTCAGTTGCAGAGAA-A----C----CA----A-- 2293
Query 2242 CAACCAATACTGGATCGCGGAAAAGAAGAAGAAAGTAAATTTTAGATTCAATCATGAAGG 2301
| | ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 2294 C--C-AATACTGGATCACGGAAAAGAAGAAGAAAGTAGACTTTAGATTCAATCATGAAGG 2350
Query 2302 TTTTAGATCTAATGCAAGGACA-TAAATG-AACACATACTT-CCCAAAACCCCAAGATAT 2358
|||||||||||||||||||||| || || ||||||||||| |||||| |||| ||||||
Sbjct 2351 TTTTAGATCTAATGCAAGGACAATAC-TGGAACACATACTTACCCAAA-CCCCGAGATAT 2408
Query 2359 GAAGACATCAAACCCTGCAAAGCATCGGGTTTGTTCAGTTGTTTGTTTCGCATTTTTGGG 2418
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2409 GAAGACACCAAACCCTGCAAAGCATCGGGTTTGTTCAGTTCTTTGTTTCACATTTTTGGG 2468
Query 2419 GTACCT------C---GAA-TTTGAGGCAAAAGAAAGAAAGA----TTTTCTTCAAAATT 2464
|||| | | ||| |||||||||||||||||||||| |||||||| |||||
Sbjct 2469 GTACTTTGAAGACCTTGAAATTTGAGGCAAAAGAAAGAAAGAAAGATTTTCTTCGAAATT 2528
Query 2465 GGATGATATGTTCATTTTTAACGGTTAA 2492
|||||||| ||||||||||||| |||||
Sbjct 2529 GGATGATAGGTTCATTTTTAACAGTTAA 2556
Score = 152 bits (82), Expect = 2e-35
Identities = 97/104 (93%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 1 TTCTCAATCCTCGCGGGACATTTATCGGGCGAGGGAAAAAGGAATCTACTAGTATTTAAA 60
|||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 20 TTCTCAATTCTCGCGGGACATTTCGCGGGCGAGGGAAAAAGGAATCTACAAGTATTT-AA 78
Query 61 ACC-TTGCTGATTTAGAAACGCCTGAGTGCATTATCTTCGAGGA 103
||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 79 ACCTTTGCTGATTTAGAAACGCCTGAGTGCATCATCTTCGAGGA 122
Score = 86.1 bits (46), Expect = 2e-15
Identities = 75/87 (86%), Gaps = 9/87 (10%)
Strand=Plus/Plus
Query 2493 TATGAAAGTTTTTG-TTATTTCCAACTAGAGAGATGTTTTGACATAAATTGTTTTGGTTT 2551
|||||||||||||| ||||||||| || ||||||||||||| | ||| ||||||
Sbjct 2582 TATGAAAGTTTTTGTTTATTTCCATCTGGAGAGATGTTTTG------A--GTTATGGTTT 2633
Query 2552 CTGTAATCGATAGAGACCGGTTTAAGA 2578
|||||||||||||||||||||||||||
Sbjct 2634 CTGTAATCGATAGAGACCGGTTTAAGA 2660
> AT3G19530.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Homeodomain-like protein with RING/FYVE/PHD-type zinc
finger domain (TAIR:AT3G19510.1); Has 10 Blast hits to 10
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr3:6774970-6775848 REVERSE LENGTH=632
Length=632
Score = 87.9 bits (47), Expect = 4e-16
Identities = 100/123 (81%), Gaps = 13/123 (11%)
Strand=Plus/Plus
Query 594 GGAGAAGTTAGAGAAGA-TGATGAGTACACAAGAATCAAAAAGAAACTTCGATACTTTCT 652
|||||||||||||||| | ||||||||||||||||||||||||||||| | ||
Sbjct 464 GGAGAAGTTAGAGAAGGGTAATGAGTACACAAGAATCAAAAAGAAACTT---T-CT---- 515
Query 653 AAACCGGATTAGCTA--T-G-AGCAAAACCTAATTGACGCCTATTCTTTAGAAGGCTGGA 708
||||||||||| || | | || |||| |||||||| || ||||| | |||||||||||
Sbjct 516 AAACCGGATTAATTAACTAGGAGAAAAAACTAATTGATGCATATTCGTAAGAAGGCTGGA 575
Query 709 AAG 711
|||
Sbjct 576 AAG 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127975871593
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5