BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479468
Length=611
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 699 0.0
> AT3G19550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 9 growth stages; Has 36 Blast hits
to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:6787241-6788292 REVERSE LENGTH=681
Length=681
Score = 699 bits (378), Expect = 0.0
Identities = 451/484 (93%), Gaps = 14/484 (3%)
Strand=Plus/Plus
Query 73 TTATACATAGTTGATGGGAAGAACTGAGATCGCCAAAGCACCAAAGCTGCTGTTAAGGAG 132
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 115 TTATACACAGTTGATGGGAAGAACTGGGATCGCCAAAGCACCAAAGCTGCTGTTAAGGAG 174
Query 133 TTGGAAGCAATTTCAAGGGCGAGCAGGGATAAGCAGCAAAGCTGCAAAACCAAACCCGAT 192
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 175 TTGGAAGCAATTTCAAGGGCGAGCAGGGATAAGCAGCAAAGCTGCAAAATCAAACCCGAT 234
Query 193 GAT-GATCAACTACTTTGAAGATATTTCCGACCACAATCTCAACTGTGGCGGCAAAGAGG 251
||| | || ||||||||||||||||||||||||| |||||||| | | ||||| ||||||
Sbjct 235 GATCG-TCGACTACTTTGAAGATATTTCCGACCATAATCTCAAATTTAGCGGCGAAGAGG 293
Query 252 AGAGCTGGGTCCCACACCCCCGCACCGGAATATTCTTTCCGCCGGGACAAGAGTCGGTGA 311
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AGAGCTGGGTCCCACACCCACGCACCGGAATATTCTTTCCGCCGGGACAAGAGTCGGTGA 353
Query 312 TGGAAGATGTCCCTAACGGTGCTGCCTCCTTCGACATGACGTTTTGGCTTAGGAACGTTG 371
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TGGAAGATGTCCCTAATGGTGCTGCCTCCTTCGACATGACGTTTTGGCTTAGGAACGTTG 413
Query 372 ACGGTGTTGATAAACCTGATCCTGATCTTCATCATCTTCCTTATTAATTAATTAGAGACA 431
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | |||
Sbjct 414 ACGGTGTTGATAAACCTGATCCTGATCTTCATCATCTTCCTTATTAATTA-T-A-A-ACA 469
Query 432 AAATTAATATGTTATTACTAATCTTATGATTGAGTCATTGAGAGATGAAAT-GTCATAAG 490
||||||||||| |||| || |||||||||||| ||||||||| ||||||| ||||||||
Sbjct 470 AAATTAATATGGTATTGCTTATCTTATGATTGTTTCATTGAGAAATGAAATCGTCATAAG 529
Query 491 GGGACACTATATACTACATGTAAGATGTAACTATATTGAATAATCTCAAGGAAATGGGGA 550
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||
Sbjct 530 GGGACACTATATACTACATGTAA-------CTATATTAAATAATCTCAAGGAAATGAGGA 582
Query 551 ATGG 554
||||
Sbjct 583 ATGG 586
Score = 97.1 bits (52), Expect = 2e-19
Identities = 70/78 (90%), Gaps = 4/78 (5%)
Strand=Plus/Plus
Query 1 TTAGAGACTGATAGAAATATACTCGTACTAATATCAATA-A-A--TACTCTGATTTCATA 56
||| ||| ||||||||||||||||||||||||||||||| | | |||||||||| ||||
Sbjct 12 TTATAGATTGATAGAAATATACTCGTACTAATATCAATATATAAATACTCTGATTCCATA 71
Query 57 TTTACATAATAAAGTATT 74
|| |||||||||||||||
Sbjct 72 TTAACATAATAAAGTATT 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29437210142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5