BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479469
Length=1915
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19553.1 | Symbols: | Amino acid permease family protein | ... 2785 0.0
> AT3G19553.1 | Symbols: | Amino acid permease family protein
| chr3:6790742-6792919 REVERSE LENGTH=1912
Length=1912
Score = 2785 bits (1508), Expect = 0.0
Identities = 1801/1934 (93%), Gaps = 54/1934 (3%)
Strand=Plus/Plus
Query 1 CAATTATACAATGATATTTTTGATCAAACGTCA-CATCCTCTCTTTGAATCTGAGATGTT 59
||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
Sbjct 6 CAACTATACAATGATATTTTTGATCAAACGTCATTTTCCAATCTTTGAATCTGAGATGAT 65
Query 60 AACTTGTTCAGCTTAATCTTTCCAATCAATTTCATCTCCTTTCTCTGCATCAAGTTTT-- 117
|||||||||||||||||||||||| |||||||||||| | || | | ||| ||||
Sbjct 66 AACTTGTTCAGCTTAATCTTTCCAGTCAATTTCATCT-C---CT-T-C--CAA-TTTTGA 116
Query 118 AGGGTTCATCagagaaagagagagagagagattcagagaTCCATTGTACCAAGCCCACAT 177
|||||||||||||| | | |||||||| |||||||||||||||||||||||| ||| |
Sbjct 117 AGGGTTCATCAGAG--A-A-AGAGAGAGCCATTCAGAGATCCATTGTACCAAGCTCACTT 172
Query 178 CGATCTACAGAATCACCGAGAGCTCTGtctctctctctctctGAGTCGGTGGTATTTGTT 237
||||||||||||||||||||| | |||||| ||||||| ||||||| ||||||||
Sbjct 173 CGATCTACAGAATCACCGAGA-----G-CTCTCTGTCTCTCT--GTCGGTGATATTTGTT 224
Query 238 TGATGGGT---GAAGAGACAATCGTGAACGATGAAAACAGCTCTGAGACAACTAAACCAA 294
|||||||| |||||||||||||| |||||||||||||||||| || | | |||||||
Sbjct 225 TGATGGGTGAAGAAGAGACAATCGTAAACGATGAAAACAGCTCTAAG-C--CAAAACCAA 281
Query 295 GTCCAAAACTGACACTATTGCCTCTAGTATTTCTCATCTTCTATGAAGTTTCTGGTGGAC 354
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 282 GTCCAAAGCTGACACTGTTGCCTCTGGTATTTCTCATCTTCTATGAAGTTTCTGGTGGAC 341
Query 355 CTTTTGGTGTGGAGGATTCTGTGAAATCAGGTGGTGGTCCTCTCTTAGCCCTTTTAGGCT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 CTTTTGGTGTGGAGGATTCTGTGAAATCAGGTGGTGGTCCTCTCTTAGCCCTTTTAGGCT 401
Query 415 TCTTGATTTTCCCTCTGATTTGGAGTATACCCGAAGCTCTGGTCACTGCAGAGCTTGCCA 474
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 402 TCTTGATTTTCCCTCTGATTTGGAGTATACCCGAAGCTCTGGTCACAGCAGAACTCGCTA 461
Query 475 CAAGCTTCCCTGAGAATGGTGGCTACGTGGTTTGGATCTCTTCAGCTTTTGGTCCGTTTT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 462 CAAGCTTCCCTGAGAATGGTGGCTACGTGGTTTGGATCTCTTCAGCTTTTGGTCCATTTT 521
Query 535 GGGGTTTCCAAGAAGGGTTTTGGAAATGGTTTAGTGGTGTTATGGACAATGCTTTATACC 594
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 522 GGGGATTCCAAGAAGGGTTTTGGAAATGGTTCAGTGGTGTTATGGACAATGCTTTATACC 581
Query 595 CTGTATTGTTTCTTGATTACTTGAAACATTCTTTCCCGGTTTTGAATCATGTAGCTGCTC 654
||||||||||||||||||||||||||||||| ||||| |||||| |||||||||| ||||
Sbjct 582 CTGTATTGTTTCTTGATTACTTGAAACATTCGTTCCCTGTTTTGGATCATGTAGCAGCTC 641
Query 655 GTGTTCCTGCTCTGTTGGTAATCACATTCTCACTGACGTATTTGAACTATAGAGGATTGC 714
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 642 GTGTTCCTGCTCTGTTGGTGATTACATTCTCACTGACGTATTTGAACTATAGAGGATTGC 701
Query 715 ATATTGTTGGTTTTTCAGCTGTTGTGCTTGCGGTTTTCTCGCTCTGTCCTTTCATTGTTA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 702 ATATTGTTGGTTTTTCAGCTGTTGTGCTTGCGGTTTTCTCGCTCTGTCCTTTCGTTGTTA 761
Query 775 TGGCTTTGCTTGCGGTTCCTCGA-ATCAGGCCTAAGCGTTGGTTGTTTGTGGATACTCAG 833
|||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 762 TGGCTTTGCTTGCGGTTCCTA-ATATCAGGCCTAAGCGTTGGTTGTTTGTTGATACTCAG 820
Query 834 AAGATTAATTGGAGAGGGTACTTCAATACCATGTTTTGGAATTTGAACTATTGGGACAAA 893
||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||
Sbjct 821 AAGATTAATTGGAGAGGCTACTTCAATACTATGTTTTGGAATCTGAACTATTGGGACAAA 880
Query 894 GCTAGTACTCTTGCAGGAGAAGTTGACAGACCCGGGAAGACGTTTCCAAAGGCTTTATTT 953
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 881 GCTAGTACTCTTGCAGGAGAAGTTGATAGACCCGGGAAGACGTTTCCAAAGGCTTTGTTT 940
Query 954 GGAGCTGTTTTGTTGGTCATGGGGTCCTATTTGATTCCGCTGATGGCAGGGACTGGAGCT 1013
||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 941 GGAGCGGTTTTGTTGGTCATGGGGTCATATTTGATTCCCCTCATGGCAGGGACTGGAGCT 1000
Query 1014 TTAAGCTCATCCTCTTCTGGAGAGTGGAGTGATGGGTATTTTGCTGAGGTTGGAATGCTT 1073
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1001 TTAAGCTCATCCACTTCTGGAGAATGGAGTGATGGGTATTTTGCTGAGGTTGGAATGCTT 1060
Query 1074 ATTGGAGGTGTTTGGCTCAAGGGATGGATACAAGCTGCTGCTGCAATGTCAAATCTTGGT 1133
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1061 ATTGGAGGTGTCTGGCTCAAGGGATGGATACAAGCTGCTGCTGCAATGTCTAATCTTGGA 1120
Query 1134 TTGTTTGAAGCCGAGATGAGTAGTGATGCATTTCAGCTTCTCGGTATGAGTGAGATCGGG 1193
||||||||||| || |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1121 TTGTTTGAAGCTGAAATGAGTAGTGATGCTTTTCAGCTTCTCGGTATGAGTGAGATTGGG 1180
Query 1194 ATGCTCCCTGCATTTTTTGCTCAGAGGTCAAAGTATGGGACACCAACCATCAGTATTCTT 1253
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1181 ATGCTCCCTGCATTTTTTGCTCAGAGGTCAAAGTATGGGACACCAACAATCAGTATTCTG 1240
Query 1254 TGCTCAGCTACAGGAGTCATATTCCTGTCATGGATGAGCTTTCAAGAGATCATAGAGTTT 1313
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1241 TGCTCAGCTACAGGAGTCATATTCTTGTCATGGATGAGCTTTCAAGAGATCATAGAGTTT 1300
Query 1314 CTGAATTTCTTGTACGCATTAGGAATGCTTCTTGAATTCGCAGCTTTTGTCAAACTAAGG 1373
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1301 CTGAATTTCTTGTACGCATTAGGAATGCTTCTTGAGTTCGCAGCTTTTGTCAAACTAAGG 1360
Query 1374 ATCAAGAAACCGGATCTTCACCGACCTTATAGAGTTCCCTTAAACACCTTTGGAGTTGCA 1433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1361 ATCAAGAAACCGGATCTTCACCGACCTTATAGAGTTCCCTTAAACACCTTTGGAGTTTCA 1420
Query 1434 ATGCTGTGCCTGCCTCCTTCTTTGCTTGTCATTCTTGTGATGGTTTTGGCCGCCCCAAAG 1493
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1421 ATGCTGTGCCTGCCTCCTTCTTTGCTTGTCATTCTTGTGATGGTTTTGGCCGCCCCGAAG 1480
Query 1494 ACATTTCTGATCAGCGGTGTGATCATAGTTCTCGGATTCTGCTTGTACCCATTCTTAACA 1553
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1481 ACATTTCTGATCAGCGGTGTGATCATAGTTCTTGGATTCTGCTTGTACCCATTCTTAACA 1540
Query 1554 CTCGTTAAGGAGAAGCAGTGGGCGACATTTATCCCGGAGGAAACAAGACCAGTTTCAGGA 1613
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1541 CTCGTTAAGGAGAAGCAGTGGGCGAGATTTATCCCGGAGGAAACAAGACCAGTTTCAGGA 1600
Query 1614 GTTCCATCAGAGTCACAGTTGGATGAAGAACATGGAGATGAGTCTGCTGCTAGTCTTCTC 1673
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1601 GTTTCATCAGAGTCACAGTTGGATGAAGAACATGGAGATGAGTCTGCTGCTAGCCTTCTC 1660
Query 1674 CCATGATCTCCACCAACAAAAGTCTGTGATTA-TT----GCACAAGTCTTTAAAGGCTCA 1728
|||||||| |||||||||||||| |||||||| || ||||||||||||||| || ||
Sbjct 1661 CCATGATCCCCACCAACAAAAGTGTGTGATTAATTTATTGCACAAGTCTTTAAAAGCGCA 1720
Query 1729 TGGTAAGTTTTGTACAGTTGTAA----GAATGAAATTTATTT--GTCTTGTTCAGCTTCC 1782
|||||||| ||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1721 TGGTAAGTCATGTACAGTTGTAATTAAGAATGAAATTTATTTATGTCTTGTTCAGCTTTG 1780
Query 1783 AATTATAGTACAGAAAACAGAACAAAAA-AGTGTAGAAGCATAGGAGGGTATGTATTTGA 1841
|||||||||||||||||||||||||||| |||||||||||| ||||||| |||| |||
Sbjct 1781 AATTATAGTACAGAAAACAGAACAAAAAGAGTGTAGAAGCA--GGAGGGTTTGTACCTGA 1838
Query 1842 GTCAAGTGTCTAAACGACTAAACAAGTATTGCTTGTGGTTATAATGTGTAAAAACCTGAA 1901
|||||||||| |||| | | ||||||||| |||||||||| ||||||||| |||
Sbjct 1839 GTCAAGTGTCCAAAC-A-T------GTATTGCTTATGGTTATAATTTGTAAAAACGTGAG 1890
Query 1902 TAAATTCATTCAAT 1915
||||||||||||||
Sbjct 1891 TAAATTCATTCAAT 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94828829505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5