BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479470
Length=2628
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19570.2 | Symbols: SCO3, QWRF1 | Family of unknown function... 3533 0.0
AT1G49890.1 | Symbols: QWRF2 | Family of unknown function (DUF5... 1596 0.0
> AT3G19570.2 | Symbols: SCO3, QWRF1 | Family of unknown function
(DUF566) | chr3:6797485-6801740 FORWARD LENGTH=2624
Length=2624
Score = 3533 bits (1913), Expect = 0.0
Identities = 2404/2629 (91%), Gaps = 81/2629 (3%)
Strand=Plus/Plus
Query 30 TCAGAAAACCCCAAATCCAGAAACCCCA-CCTTTCTCCAATTCTCACA----TCTCTCTT 84
|||||| ||||||||||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 47 TCAGAATACCCCAAATCCAGAAACCCCACCCTTTCTTCAATTCTCACATCTCTCTCTCTT 106
Query 85 CGCTCTGAAGCAAAGAAAAATATGCAAAATCCTTTGTGAAACaaaaaaaaTCACATTT-G 143
|||||||||||||||| |||||||||||||||| | || ||| |||| |||| ||| |
Sbjct 107 CGCTCTGAAGCAAAGACAAATATGCAAAATCCTCTCTG-AAC---AAAATTCAC-TTTGG 161
Query 144 A-TTGCAAAATTTATTTATTTTG-TCTAAGGTAGAGAGTGAGGAGAAGAAACTGACAAAT 201
| |||| | | ||||| |||| ||||| || |||||||||||||| ||||| |
Sbjct 162 ATTTGC-AGA---ATTTA-TTTGCTCTAA-GT-TAGAGTGAGGAGAAGCAACTG-C---- 209
Query 202 CAAATCTCTGTAATGCACTGTgaagatctcgaagaccaagacgaagaagaagaagaagac 261
||||||||||||||||||||||||||||||||||| | | || |||| ||||||||||||
Sbjct 210 CAAATCTCTGTAATGCACTGTGAAGATCTCGAAGAAC-A-AC-AAGACGAAGAAGAAGAC 266
Query 262 gaagCAGCGAGTGATTTCTCGTAGAGAATGGTGGCTGCGATTCCTCAAGCAGCAGCTATT 321
||||||||||| |||||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct 267 GAAGCAGCGAGACATTTCTCGTAGATAATGGTGGCTGCGATTCCTCAAGGAGCAGCAATT 326
Query 322 TCCAGCACCGACTCTAAGAA---TCCACCTCGAGATCGACAGGACAAACCTCAACTCACA 378
|||| ||||||||||||||| ||||||||||||||| || ||||||||||| ||||||
Sbjct 327 TCCAACACCGACTCTAAGAATCCTCCACCTCGAGATCGGCAAGACAAACCTCAGCTCACA 386
Query 379 GCTAACAATGGCGGACTACAACGAAGACCTAGAGCTGCTAAAAGTGTCCCCTCGCGCTAC 438
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 387 GCTAACAATGGCGGACTACAACGAAGACCTAGAGCTGCTAAAAATGTCCCCTCACGCTAC 446
Query 439 TTATCTCCTTCTCCTTCTCA-TCC-C-TCGAC--C-ACCACCACTGCTACATCTACTTC- 491
||||| ||||||||||| || ||| | |||| | || ||||||||||||||||||||
Sbjct 447 TTATCCCCTTCTCCTTCACATTCCACGACGACGACGACGACCACTGCTACATCTACTTCG 506
Query 492 -C-TCTTCTTCTTCGTCTGCGGTACTGAGGACAAGTAAGCGATATCCTTCCCCTTTGCTC 549
| || ||||||||||||| | |||||||| | |||||||||||||||||||||||||||
Sbjct 507 ACTTCGTCTTCTTCGTCTGTGATACTGAGGTCTAGTAAGCGATATCCTTCCCCTTTGCTC 566
Query 550 TCTCGCTCGACGAATTCTGCTTCTAATTTGGTTAAGACGCCTTCCTCGTTGCCCAAACGG 609
|||||| |||||||||||||||||||||||||| | |||||||||||||| || ||||||
Sbjct 567 TCTCGCACGACGAATTCTGCTTCTAATTTGGTTTATACGCCTTCCTCGTTACCTAAACGG 626
Query 610 TCTCAATCGGTGGACCGTCGTCGTCCGTCGGCAGTTTCTGACACCAGAACCGAAATGTCG 669
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 627 TCTCAATCGGTGGACCGTCGTCGTCCGTCGGCAGTTTCTGACACCCGAACGGAAATGTCG 686
Query 670 GCGGCGACGAAGATGCTTATCACTTCTACTAGGAGTTTATCTGTTTCTTTTCAAGGAGAG 729
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 687 GCGGCGACGAAGATGCTTATCACTTCTACGAGGAGTTTATCTGTTTCCTTTCAAGGAGAG 746
Query 730 GCGTTTTC-TCTTCCGATTAGTAAGAAGAAGGAGACTACCACGCCTGTTTCTCACCGGAA 788
|||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 747 GCGTTTTCGT-TTCCGATTAGTAAGAAGAAGGAGACTGCCACGCCGGTTTCTCACCGGAA 805
Query 789 ATCTACTCCTGAGAGGCGGAGAGCGACACCTGTTCGAGATCAGAGGGAGAATTCTAAGCC 848
|| |||||| ||| ||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 806 ATGTACTCCGGAGCGGCGGAGAGCGACACCTGTTCGAGATCAGCGGGAGAATTCAAAGCC 865
Query 849 GGTGGATCAGCAACTGTGGCCAGGTGCTTCTCGGAGGGGAAGTTCTGACTCTGTTGTGCC 908
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 866 GGTGGATCAGCAACTGTGGCCTGGTGCTTCTCGGAGGGGAAGTTCTGAATCTGTTGTGCC 925
Query 909 GAATTCGCTTTCTAGAAGCGTGAATTGTGACAGTGATAGTA-GTG-GGAAGCTTGGATCT 966
|||||||||||||||||||||| ||| |||||||||| | | | | ||||||||||||||
Sbjct 926 GAATTCGCTTTCTAGAAGCGTGGATTCTGACAGTGAT-G-ATGGGAGGAAGCTTGGATCT 983
Query 967 GGCTTTGTGGGAAGGTCAATGTTGCAGCATTCTCAGAGTTCTAGGGTTTCTGTTGATGAG 1026
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 984 GGCTTTGTGGGAAGGTCAATGTTGCAGCATTCGCAGAGTTCTAGGGTTTCTGGTGATGGG 1043
Query 1027 AGATTGAATTTAGATTTTGGAGGAGGTGATGGAATTTTGGAAATGAGAGATGAGAGCAAG 1086
||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 1044 AGATTGAATTTAGGTTTTGTAGGAGGTGATGGAATGTTGGAAATGAGAGATGAGAACAAG 1103
Query 1087 ACAAGACCAAGCACATATCCAAAATTGGGTTCTAGTGTTTCGTGTGACTTTACTGCATCT 1146
|||||| ||||||| |||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 1104 GCAAGACAAAGCACACATCCAAGATTGGCTTCTAGCGTTTCGTGTGACTTTACTGCATCT 1163
Query 1147 GATACTGATAGTGTTTCATCTGGTAGCACTAATGGTGCGCAGGAATGTTGTTCTGGTGTC 1206
|||||||||||||||||||||||||| |||||||||||||| ||| || |||| ||
Sbjct 1164 GATACTGATAGTGTTTCATCTGGTAGTACTAATGGTGCGCATGAA---TG---TGGT-TC 1216
Query 1207 AATGGTGAGGTTTCTAAAACAAGGAGCTTGCCGCGTAATAATGCTATGGCTTCTGCTAAA 1266
||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct 1217 --TGGTGAGGTTTCTAAAACAAGGAGCTTGCCGCG---TAATGGTATGGCTTCTACTAAA 1271
Query 1267 TTCTGGCAAGAGACTAATAGCCGGTTAAGGCGGTTTCAGGATCCTGGCTCACCTCGATGT 1326
||||||||||||||||||||| ||||||||||| | ||||||||||||||||||| ||||
Sbjct 1272 TTCTGGCAAGAGACTAATAGCAGGTTAAGGCGGATGCAGGATCCTGGCTCACCTCAATGT 1331
Query 1327 TCTAGCCCAAGTTCGAGAATCAGTAGTATCTCATCATCAAAGTTCAGTCAATCGAAACGG 1386
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1332 TCTAGCCCAAGTTCGAGAATCAGTAGTA--TC-TCATCAAAGTTCAGTCAATCGAAACGG 1388
Query 1387 TTCTCTAGTGATAGTCCGTTGACATCATCTCCTCGCGGTATGACTTCTCCAATAAGGGGT 1446
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1389 TTCTCTAGTGATAGTCCGTTGACATCATCTCCTCGTGGTATGACTTCTCCAATAAGGGGT 1448
Query 1447 GCTTCTCGCCCTGCTTCACCAAGTAAGCTTTGGGCAACAGCTACATCAACTCCAGCTAGG 1506
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1449 GCTACTCGCCCTGCTTCACCAAGTAAGCTTTGGGCAACAGCTACATCAGCTCCAGCTAGG 1508
Query 1507 GCACT-TTCTAGTCCTTCCCGAGTGAGAAATGGAGTTTCTGAACAAATGAATGCTTATAA 1565
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 ACA-TCATCTAGTCCTTCTCGAGTGAGAAATGGAGTTTCTGAACAAATGAATGCTTATAA 1567
Query 1566 CCGCACCTTGCCTTCAATTCTTTGTTTCTCTGCTGATATTAGGAGGGGGAAAATTGGGGA 1625
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1568 CCGCACCTTGCCTTCAATTCTTTGTTTCTCTGCTGATATTAGGAGGGGTAAAATTGGGGA 1627
Query 1626 GGATCGCGTTATGGATGCCCACTTGTTGAGGCTTCTGTATAACCGTTACCTGCAATGGCG 1685
|||||| ||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct 1628 GGATCGTGTTATGGATGCCCACTTGTTGAGGCTTCTGTATAACCGTGATCTGCAGTGGCG 1687
Query 1686 GTTTGCCAATGCGAGGGCGGACTCTACTTTCATGGTACATAGACTGAGTGCAGAGAAAAA 1745
|||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||
Sbjct 1688 GTTTGCCAATGCGAGGGCAGACTCCACTCTCATGGTACAAAGACTGAGTGCAGAGAAAAT 1747
Query 1746 CCTCTGGAACGCATGGGTATCAATCTCGGAACTACGCCATTCTGTCACTCTGAAACGGAT 1805
||| ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1748 CCTGTGGAATGCATGGGTATCAATCTCGGAATTGCGCCATTCTGTCACTCTGAAACGGAT 1807
Query 1806 CAAGTTGCTTTTGCTGAGGCAAAAACTGAAACTAGCTTCCATCTTGAAGGAGCAGAT-TG 1864
||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1808 CAAGTTGCTCTTGATGAGGCAGAAACTGAAACTAGCTTCCATCTTGAAGGAGCAGATGTG 1867
Query 1865 GTTATCTAGAAGAATGGTCTCTTATGGACAGAGATCATTCAAATTCTTTGTCAGGAGCGA 1924
|||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
Sbjct 1868 -TTATCTAGAAGAATGGTCTCTTTTGGACAGAAATCACTCAAATTCTTTGTCAGGAGCAA 1926
Query 1925 CTGAAGCTTTGAAAGCGAGCACGCTTCGTCTTCCAATTAGTGGAAAAGCCTTGGTTGATA 1984
||||||| |||||||| ||||| |||||||||||| ||||||| |||||| |||||||||
Sbjct 1927 CTGAAGCCTTGAAAGCCAGCACACTTCGTCTTCCAGTTAGTGGTAAAGCCGTGGTTGATA 1986
Query 1985 TTCAAGATCTCAAGCATGCTGTTAGTTCAGCCGTTGATGTCATGCACGCTATGGTGTCTT 2044
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1987 TTCAAGATCTCAAGCATGCTGTTAGTTCAGCGGTTGATGTCATGCACGCTATGGTGTCTT 2046
Query 2045 CGATTTTCTCGCTGACATCGAAGGTGGAGGAAATGAATTCAGTAATGGCGGAAATGGTGA 2104
| || ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2047 CAATATTCTCACTTACATCGAAGGTGGAGGAAATGAATTCAGTAATGGCAGAAATGGTGA 2106
Query 2105 ATATCACTGCGAAA-GAAAATGTTTTGCTTGAACAGTGTCAAGGATTCTTATCAAGAGTA 2163
||||||||| |||| ||| | |||||||| ||||||||||||||||||||| ||||||||
Sbjct 2107 ATATCACTG-GAAAAGAAGAGGTTTTGCTCGAACAGTGTCAAGGATTCTTAACAAGAGTA 2165
Query 2164 GCAGCAATGCAGGTAACGGACTGCAGCATGAAGACGCACATAATACAACTAAGCCGGATA 2223
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 2166 GCAGCAATGCAGGTTACGGACTGCAGCATGAAGACGCACATAATACAACTTAGCCGGCTA 2225
Query 2224 TAAACCAACCTGACTTCACAACTGTAGAAACTGATCTCCTCTGAGCTTACACGACTACTC 2283
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 2226 TAAACCAACCTGACTTCACAACTGTAGAAACTGATCTCCTCTGCGTTTACACGACTACTC 2285
Query 2284 ACGCCACTTCACAACATGAATGATTTCTAACAACGTTTTAGACTCCCACGGCCTTCCCTT 2343
||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||| ||
Sbjct 2286 ACGCCACTTCACAACCTGAATGGTTTCTAACAACGTTTTACATTCCCACGGCCTTCTCTC 2345
Query 2344 GGATTCCCAAAACCGCCTTTATTGTTTTCAACCGGATCAAGGTGAGAT-TCTCGGGATAT 2402
||| || ||||||||||||||| ||||||||||||||||||||| | | ||||| |||||
Sbjct 2346 GGAATCTCAAAACCGCCTTTATCGTTTTCAACCGGATCAAGGTGTGCTGTCTCGAGATAT 2405
Query 2403 CTGTTTCACTGCACTCTGGGATTCGACGtttttttATT-TAAGTTCCTGCATTGGAGATT 2461
|||||||||||||||| || |||| ||||||||| | | ||||||||||||||||||| |
Sbjct 2406 CTGTTTCACTGCACTCCGG-ATTCAACGTTTTTTAAATGTAAGTTCCTGCATTGGAGAAT 2464
Query 2462 TACAGAAGAGAGAGGTAAAAGAATAGAATGTGGTGTTTAGTTTTGCCTATGAAGTTAGCT 2521
||||||||| | |||| ||||||||||||||||||||||||||| |||||||| |||| |
Sbjct 2465 TACAGAAGA-A-AGGTGAAAGAATAGAATGTGGTGTTTAGTTTTACCTATGAATTTAGTT 2522
Query 2522 TAATTGTATACAGAAAAAGCTTCTAA-TAGATCTTTTG-CTTTTGTTCTCTAATGAAGAA 2579
|||||||||||||||||||||||||| |||||| || | ||||||||||| |||||||||
Sbjct 2523 TAATTGTATACAGAAAAAGCTTCTAAATAGATCATT-GACTTTTGTTCTCAAATGAAGAA 2581
Query 2580 GaaaaaaaaTGTACATAAAGATGAAGATATCAATCTCTCTTATTTAGAG 2628
|||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2582 -AAAAAA--TGTACATAA---TGAAGATATCAATCTCTCTTATTTAGAG 2624
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1 GTTCATCAAACCTCCGAAAAAGCGAAAATT 30
||||||||||||||||||||||||||||||
Sbjct 1 GTTCATCAAACCTCCGAAAAAGCGAAAATT 30
> AT1G49890.1 | Symbols: QWRF2 | Family of unknown function (DUF566)
| chr1:18470075-18473823 FORWARD LENGTH=2547
Length=2547
Score = 1596 bits (864), Expect = 0.0
Identities = 1543/1858 (83%), Gaps = 97/1858 (5%)
Strand=Plus/Plus
Query 466 ACCACCACCACTGCTACATCTACTTCCTCTTCTTCTTCGTCTGCGGTACTGAGGACAAGT 525
||||||||||| || | ||| | |||||||||||||| ||||| |||| || || |||
Sbjct 385 ACCACCACCAC--CT-CTTCTTCCTCCTCTTCTTCTTCCTCTGCAATACTCAGAACTAGT 441
Query 526 AAGCGAT----A--TCCTTCCCCTTTGCTCTCTCGCT---CGACGAATTCTGCTTCTAAT 576
|| |||| | |||||| ||||| |||||||||| |||||||||| ||||| |||
Sbjct 442 AAACGATACCCATCTCCTTCGCCTTTACTCTCTCGCTCCACGACGAATTCCGCTTCCAAT 501
Query 577 TTGGTTAAGACGCCTTCCTCGTTGCCCAAACGGTCTCAATCGGTGGACCGTCGTCGTCCG 636
| | | || ||||| || | ||| || |||||||||||||| |||||||||||||| ||
Sbjct 502 TCGATCAAAACGCCGTCTTTGTTACCTAAACGGTCTCAATCAGTGGACCGTCGTCGACCC 561
Query 637 TCGGCAGTTTCTGACAC--CA-GAACCGAAATGTCGGCGGCGACGAAGATGCTTATCACT 693
||||| ||||| | ||| | | || |||||||||||||| ||||||||||||||||||
Sbjct 562 TCGGCGGTTTCGGTCACTGTAGGCACTGAAATGTCGGCGGCTACGAAGATGCTTATCACT 621
Query 694 TCTACTAGGAGTTTATCTGTTTCTTTTCAAGGAGAGGCGTTTTCTCTTCCGATTAGTAAG 753
|| ||||||||||| |||||||| |||||||| || || ||||||||||||||||||||
Sbjct 622 TCCACTAGGAGTTTGTCTGTTTCGTTTCAAGGTGAAGCCTTTTCTCTTCCGATTAGTAAA 681
Query 754 AAGAAGGAGACTAC--C-ACGCCTGTTTCTCACCGGAAATCTACTCCTGAGAGGCGGAGA 810
||||| |||||||| | ||||| ||||||||||||||||||||||| ||| | ||||||
Sbjct 682 AAGAAAGAGACTACTTCTACGCCGGTTTCTCACCGGAAATCTACTCCGGAGCGACGGAGA 741
Query 811 GCGACACCTGTTCGAGATCAGAGGGAGAATTCTAAGCCGGTGGATCAGCAACTG-TGGCC 869
|||| || |||||||||||||| ||||| |||||||| ||||| || |||| | |||||
Sbjct 742 TCGACGCCGGTTCGAGATCAGAGAGAGAACTCTAAGCCTGTGGACCAACAAC-GCTGGCC 800
Query 870 AGGTGCTTCTCGGA-GGGGAAGTTCTGACTCTGTTGTGCCGAATTCGCTTTCTAGAAGCG 928
|| || || |||| |||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 801 TGGAGCCTCACGGAGGGGGAA-TTCTGAATCTGTTGTGCCGAATTCGCTTTCTAGAAGC- 858
Query 929 TGA-ATTGTGACAGTGATAGTAGTGGGAAGCTTGGATCTGGCTTTG-TGGGAAGGTCAAT 986
| | |||||| |||||||| | || |||||||||||||| |||| |||| ||||||||
Sbjct 859 TTAGATTGTGGTAGTGATAG-A--GGAAAGCTTGGATCTGGGTTTGTTGGG-AGGTCAAT 914
Query 987 GTTGC---A-GC----ATT-CTCAGAGTTCTAGGGTTTCTGTTGATGAGAGATTGAATTT 1037
||||| | | ||| | ||||| |||||||||||||| ||| |||||||| |||
Sbjct 915 GTTGCATAATTCTATGATTGATGAGAGTCCTAGGGTTTCTGTTAATGGGAGATTGAGTTT 974
Query 1038 AGATTTTGGAGG-AGGTGATGGAAT-TTTGGA-AATGAGAGATGAGAGCAAGACAAGACC 1094
|||||| ||||| ||| ||| |||| |||||| | || ||||||| | | ||| ||||||
Sbjct 975 AGATTTGGGAGGTAGG-GAT-GAATATTTGGATATTG-GAGATGATATCCAGAGAAGACC 1031
Query 1095 AAGCACATATCCAAAAT-TG-GGTTCTAGTGTTTCGTGTGACTTTACTGCATCTGATACT 1152
| | ||| | | || | ||||||||||| |||||||||||||| |||||||||
Sbjct 1032 -A--A-ATA---ATGGTCTGACG-TCTAGTGTTTCCTGTGACTTTACTGCTTCTGATACT 1083
Query 1153 GATAGTGTTTCATCTGGTAGCACTAATGGTGCGCAGGAATGTTGTTCTGGTGTCAATGGT 1212
||||||||||| ||||||||||||||||||| || |||||| | |||||||| ||||||
Sbjct 1084 GATAGTGTTTCTTCTGGTAGCACTAATGGTGTTCAAGAATGTGGCTCTGGTGTTAATGGT 1143
Query 1213 GAGGTTTCTAAAACAAGGAGCTTGCCGCGTAATAATGCTATGGCTTCTGCTAAATTCTGG 1272
|| | |||||| ||| ||||||||| |||||| || |||||||||||||| ||||||
Sbjct 1144 GAAATCTCTAAATCAAAGAGCTTGCCTCGTAAT-AT--TATGGCTTCTGCTAGGTTCTGG 1200
Query 1273 CAAGAGACTAATAGCCGGTTAAGGCGGTTTCAGGATCCTGGCTCACCTCGATGTTCTAGC 1332
||||||||||||||||||||||||||||| |||||||| || || ||| || ||||||
Sbjct 1201 CAAGAGACTAATAGCCGGTTAAGGCGGTTGCAGGATCCAGGTTCGCCTTTATCCTCTAGC 1260
Query 1333 CCAAGTTCGAGAATCAGTAGTATCTCATCATCAAAGTTCAGTCAATCGAAACGGTTCTCT 1392
|| ||| || || ||||||||| || | |||||||| ||| ||||||||||| |||
Sbjct 1261 CCGGGTTTGAAAACCAGTAGTATATC-T--TCAAAGTTTGGTCTTTCGAAACGGTTTTCT 1317
Query 1393 AGTGATA--GT-CCGTTGACATCATCTCCTCGCGGTATGACTTCTCCAATAAGGGGTGCT 1449
|| ||| || || || | ||||||||||| |||||| ||||||| |||| ||| ||
Sbjct 1318 AGCGATGCTGTTCCTTT-A--TCATCTCCTCGTGGTATGGCTTCTCCTGTAAGAGGTTCT 1374
Query 1450 TCT---CGCCCTGCTTCACCAAGTAAGCTTTGGGCAACAGCTACATCAACTCCAGCTAGG 1506
|| ||| ||||||||||||||||||||||||| ||| |||| ||| ||||||||||
Sbjct 1375 GCTATACGCTCTGCTTCACCAAGTAAGCTTTGGGCGACAACTACGTCATCTCCAGCTAGA 1434
Query 1507 GCACTTTCTAGTCCTTCCCGAG-TGAGAAATGGAGTTTCTGAACAAATGAATGCTTATAA 1565
|| ||||| || ||||| |||| | ||||||||||||||||| |||||||| ||||||||
Sbjct 1435 GCTCTTTCGAGCCCTTCTCGAGCT-AGAAATGGAGTTTCTGATCAAATGAACGCTTATAA 1493
Query 1566 CCGCA-C--CTTGCCTTCAATTCTTTGTTTCTCTGCTGATATTAGGAGGGGGAAAATTGG 1622
||||| | | ||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1494 CCGCAACAACACGCCTTCAATTCTTAGTTTCTCTGCTGATATTAGGAGAGGGAAAATTGG 1553
Query 1623 GGAGGATCGCGTTATGGATGCCCACTTGTTGAGGCTTCTGTATAACCGTTACCTGCAATG 1682
||||||||| ||||||||||| || |||||||||||||| ||||||||| ||||||| ||
Sbjct 1554 GGAGGATCGTGTTATGGATGCACATTTGTTGAGGCTTCTATATAACCGTGACCTGCAGTG 1613
Query 1683 GCGGTTTGCCAATGCGAGGGCGGACTCTACT-TTCATGGTACATAGACTGAGTGCAGAGA 1741
|||||||| |||||||||||| ||||||||| || ||||| || || ||| |||||||
Sbjct 1614 GCGGTTTGTCAATGCGAGGGCAGACTCTACTGTT-ATGGTGCAAAGGTTGAACGCAGAGA 1672
Query 1742 AAAACCTCTGGAACGCATGGGTATCAATCTCGGAACTACGCCATTCTGTCACTCTGAAAC 1801
||||||| ||||| ||||||||||||||||||||||| || || ||||||| | ||||
Sbjct 1673 AAAACCTGTGGAATGCATGGGTATCAATCTCGGAACTGCGGCACAGTGTCACTTTAAAAC 1732
Query 1802 GGATCAAGTTGCTTTTGCTGAGGCAAAAACTGAAACTAGCTTCCAT-CTTGAAGG-AGCA 1859
| ||||||||||||||||| ||||| ||| ||||||| ||||| || || || || | ||
Sbjct 1733 GAATCAAGTTGCTTTTGCTAAGGCAGAAATTGAAACTGGCTTCTATTCT-GAGGGGA-CA 1790
Query 1860 GATTGGTTATCTAGAAGAATGGTCTCTTATGGACAGAGATCATTCAAATTCTTTGTCAGG 1919
||| |||| ||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 1791 GATGGGTTTTCTAGAAGAATGGTCTCTTCTGGATAGAGATCATTCAAGTTCTTTGTCAGG 1850
Query 1920 AGCGACTGAAGCTTTGAAAGCGAGCACGCTTCGTCTTCCAATTAGT-GGAAAAGCCTTGG 1978
||| || ||| | |||||||| ||||| |||||||| ||||| ||| |||||| || |||
Sbjct 1851 AGCAACCGAATCCTTGAAAGCCAGCACACTTCGTCTACCAAT-AGTTGGAAAAACCGTGG 1909
Query 1979 TTGATATTCAAGATCTCAAGCATGCTGTTAGTTCAGCCGTTGATGTCATGCACGCTATGG 2038
||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1910 TTGATATTCAAGACCTCAAGCATGCTGTTAGTTCAGCCGTCGATGTAATGCAAGCTATG- 1968
Query 2039 TG-TCTTCGATTTTCTCGCTGACATCGAAGGTGGAGGAAATGAATTCAGTAATGGCGGAA 2097
| ||||| || ||||| ||||| ||||||||||| || |||||||| ||||||| ||||
Sbjct 1969 TCATCTTCCATATTCTCACTGACGTCGAAGGTGGATGAGATGAATTCTGTAATGGTGGAA 2028
Query 2098 ATGGTGAATATCACTGCGAAAGAAAATGTTTTGCTTGAACAG-TGTCAAGGATT-CTTAT 2155
| |||||| | ||||| |||||||| |||||||||||| || |||||||| || |||||
Sbjct 2029 ACCGTGAATGTAACTGCTAAAGAAAAGGTTTTGCTTGAA-AGATGTCAAGG-TTGCTTAT 2086
Query 2156 CAAGAGTAGCAGCAATGCAGGTAACGGACTGCAGCATGAAGACGCACATAATACAACTAA 2215
||||||||||||| |||||||| || || || |||||||| ||||| |||||||||||||
Sbjct 2087 CAAGAGTAGCAGCTATGCAGGTTACTGATTGTAGCATGAAAACGCATATAATACAACTAA 2146
Query 2216 GCCGGATATAAA-C-CAA-C--CT-GACTTCACAACTGTAGAAA--CTGATCT-CCTC 2264
| |||||| || | ||| | || |||| | ||| |||||||| ||||||| ||||
Sbjct 2147 GTCGGATACCAATCACAAGCAGCTTGACTCCGCAATTGTAGAAAAACTGATCTTCCTC 2204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130484218743
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5