BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479472
Length=998
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19580.1 | Symbols: AZF2, ZF2 | zinc-finger protein 2 | chr3... 1279 0.0
> AT3G19580.1 | Symbols: AZF2, ZF2 | zinc-finger protein 2 | chr3:6803166-6804233
REVERSE LENGTH=1068
Length=1068
Score = 1279 bits (692), Expect = 0.0
Identities = 869/949 (92%), Gaps = 34/949 (4%)
Strand=Plus/Plus
Query 1 ATGGCCCTCGAAGCGATGAATTCTCCAACTTC--C-TTCACCAGAATCGAAACGAAAGAA 57
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct 120 ATGGCCCTCGAAGCGATGAACACTCCAACTTCTTCTTTCACCAGAATCGAAACGAAAGAA 179
Query 58 GATTTGATGAACGACGCCGTTTTCATTGAACCGTGGCTTAAACGCAAACGCTCCAAACGT 117
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 GATTTGATGAACGACGCCGTTTTCATTGAGCCGTGGCTTAAACGCAAACGCTCCAAACGT 239
Query 118 CAGCGTTCTCACAGCCCTTCTTCGTCTTCCTCCTCGCCGCCTCGATCTCGTCCTAAATCG 177
||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||
Sbjct 240 CAGCGTTCTCACAGCCCTTCTTCGTCTTCTTCCTCACCGCCTCGATCTCGACCCAAATCC 299
Query 178 CAGAATCAAGATCTTACAGAGGAAGAGTATCTCGCTCTCTGTCTCCTCATGCTCGCTAAA 237
||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 300 CAGAATCAAGATCTTACGGAAGAAGAGTATCTCGCTCTTTGTCTCCTCATGCTCGCTAAA 359
Query 238 GATCAACCGTCTCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA 297
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATCAACCGTCGCAAACGCGATTTCATCAACAGTCGCAATCGTTAACGCCGCCGCCAGAA 419
Query 298 TCAAAGAATCTTCCGTACAAGTGTAGCGTTTGTGGAAAAGCGTTTCCTTCGTATCAGGCT 357
|||||||| |||||||||||||||| ||| |||| ||||||||||||||| |||||||||
Sbjct 420 TCAAAGAACCTTCCGTACAAGTGTAACGTCTGTGAAAAAGCGTTTCCTTCCTATCAGGCT 479
Query 358 TTAGGCGGTCACAAAGCAAGTCACCGTATCAAACCACCAACCGTAATCT---CTATCGCC 414
|||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||
Sbjct 480 TTAGGCGGTCACAAAGCAAGTCACCGAATCAAACCACCAACCGTAATCTCAACAACCGCC 539
Query 415 GATGATTCAACAGCTCCGACCATCT-C--CGTCGTCGGAGAAAAACATCCGATTGCCGCC 471
||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||
Sbjct 540 GATGATTCAACAGCTCCGACCATCTCCATCGTCGCCGGAGAAAAACATCCGATTGCTGCC 599
Query 472 TCCGGCAAGATCCACGAGTGTTCAATATGTCACAAAGTGTTTCCGACGGGTCAAGCACTC 531
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 600 TCCGGAAAGATCCACGAGTGTTCAATCTGTCATAAAGTGTTTCCGACGGGTCAAGCTTTA 659
Query 532 GGCGGTCATAAACGCTGTCACTACGAAGGCAACCT---CGGC---GGAGGAGGAGGAAGC 585
|||||||| ||||| |||||||||||||||||||| |||| |||||||||||||||
Sbjct 660 GGCGGTCACAAACGTTGTCACTACGAAGGCAACCTCGGCGGCGGAGGAGGAGGAGGAAGC 719
Query 586 AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATCAATCAGTCACAGTGGAAGCGTGTCGAGCACGGTATCGGAAGAAAGGAGCCACCGT 779
Query 646 GGATTTATCGATCTAAACCTACCGGCGTTACCTGAGCTCGGTCTTCATAACAACCCAATC 705
||||| ||||||||||||||||||||||||||||| ||| | |||||| |||| ||||||
Sbjct 780 GGATTCATCGATCTAAACCTACCGGCGTTACCTGAACTCAGCCTTCATCACAATCCAATC 839
Query 706 GTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCAC 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GTCGACGAAGAGATCTTGAGTCCGTTGACCGGTAAAAAACCGCTTTTGTTGACCGATCAC 899
Query 766 AACCAAGTCATCAAGAAAGAAGATTTCTCTTTAAGAATCTAATATTCGACTATTAATTCT 825
||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 900 GACCAAGTCATCAAGAAAGAAGATTTATCTTTAAAAATCTAATACTCGACTATTAATTCT 959
Query 826 TGTGTAAttttt--c---a------t--ttt--t---catttttttagttacag-ttttt 866
||||| |||||| | | | ||| | |||||||||||||||| |||||
Sbjct 960 TGTGTGATTTTTTTCGTTACAACCATAGTTTCATTTTCATTTTTTTAGTTACAAATTTTT 1019
Query 867 catttttCTGATTTGGATTGAATATTCGTATATTGTTAGGGATTGATAC 915
||| ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1020 AATTGTTCTGATTTGGATTGAATATTGGTATATTGTTAGGGGTTGATAC 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48877825031
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5