BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479477 Length=1964 Score E Sequences producing significant alignments: (Bits) Value AT3G19610.1 | Symbols: | Plant protein of unknown function (DU... 3097 0.0 > AT3G19610.1 | Symbols: | Plant protein of unknown function (DUF936) | chr3:6812493-6814719 REVERSE LENGTH=1982 Length=1982 Score = 3097 bits (1677), Expect = 0.0 Identities = 1875/1970 (95%), Gaps = 15/1970 (1%) Strand=Plus/Plus Query 1 TAAACACATTAG-CTTCCACCGATCTTGTTCTTGTCTGTATGCAACAGATTGAGAAACGT 59 |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| Sbjct 22 TAAACACATTAGAC-TCCACCAATCTTGTTCTTGTCTGTATGCAACAGATTGAGAAACGT 80 Query 60 AGCCTTCTCTGTTCGTTTCTCTCTGTGTTTCATCTGATACATTTACAAGCATTGCTT-TT 118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 81 AGCCTTCTCTGTTCGTTTCTCTCTGTGTTTCATCTGATACATTTACAAGCATTGCTTCTT 140 Query 119 GGAAATGGCAGAACTAAGATCAGGTGTTCTTTTCAAGCTTCTAGAAGAAATGGGAGTCGG 178 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 141 G-AAATGGCAGAATTAAGATCAGGTGTTCTTTTCAAGCTTCTAGAAGAAATGGGAGTCGG 199 Query 179 GAAAGTGCGAAGAGACGTCGATCACAGACCGGTTTTGCTGCAGATAAGAAGCATAATCCC 238 |||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| Sbjct 200 GAAAGTGCGAAGAGACGTCGATCACAGACCCGTTTTGCTGCAAATAAGATGCATAATCCC 259 Query 239 TGTGTTAGCAGCTGGAGGATTATGGCCAAACAAAGGTTTCTTCTTGAGGATAACAGATTC 298 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 260 TGTGTTAGCAGCTGGAGGGTTATGGCCAAACAAAGGTTTCTTCTTGAGGATAACAGATTC 319 Query 299 AACACACTCAATGTATGTATCATTGCCGCGAGAAGAGAACGATCTTGTTCTTTACGACAA 358 ||||| ||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct 320 GACACATTCAATATATGTCTCATTGCCACGAGAAGAGAACGATCTTGTTCTCTACGACAA 379 Query 359 GTTACAAATCGGGCAATTGATATTCATCGAGAAGCTTGAATTTGCTTATCCAGTTCCTAT 418 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 380 GTTACAAATCGGGCAATTGATATTCGTCGAGAAGCTTGAATTTGCTTATCCAGTTCCCAT 439 Query 419 GATCAAAGGCATTAGACCAACTCCAGGCCGAAGGGCTTGCACCGGTGATCCAATCGATCT 478 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 440 GATCAAAGGCATTAGACCAACACCTGGCCGAAGGGCTTGCACCGGTGATCCAATCGATCT 499 Query 479 AATCCCTAAAGAACGGATCGAAAAGTTCTGTGTCGGTCTATCGGATA-CGGAAGAAAACT 537 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 500 AATCCCTAAAGAACGGATCGAAAAGTTCTGTGTCGGTCTATCGGATATCG-AAGAAAACT 558 Query 538 ATGATCACCAAGTGAAGAAGCCAAGAAGAACGAGATGGAATAACTCAAGCGTCTCTGAGT 597 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 559 ACGATCACCAAGTGAAGAAGCCAAGAAGAACTAGATGGAATAACTCAAGCGTCTCTGAGT 618 Query 598 TAAATTTTACAGATTTGGGGTTATCGAAAAACCTTTCGAGTGTTATGGAAGAAAAGGATG 657 |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| Sbjct 619 TAAACTTTACAGATTTAGGGTTATCGAAAAATCTTTCGAGTGTTATGGAAGAAAAGGATG 678 Query 658 ATACAGAGTCAATGATTTCGAGTTGCTCTTCGTCTTTTTCTTCAGTAGCTAGGAGAAGAA 717 ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| Sbjct 679 ATACAGAGTCAATGATTTCAAGTTGCTCTTCGTCTTTTTCTTCAGCAGCTAGGAGGAGAA 738 Query 718 GCTGGATAGGCTCAGG-TGATAATAGGAAGAGAAGAGAGTCGTTAGATCCATCCATGATT 776 ||||||||||||| || ||||||||||||||||||||| || |||||||||||||||||| Sbjct 739 GCTGGATAGGCTC-GGCTGATAATAGGAAGAGAAGAGATTCATTAGATCCATCCATGATT 797 Query 777 AAGAATCATGATCATGACACTAAACATGCTTCAATTGCTCGAAGTTCTTCCGCTACTTCA 836 |||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| Sbjct 798 AAGAATCATGATCATGACACTAAACATGTTTCAAGAGCTCGAAGTTCTTCTGCTACTTCA 857 Query 837 CCTTCGCTGTCTATCCGAAGCTATGGAGGGATAGAGGAGAAATCAAGTAGTAGAACAAGA 896 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 858 CCTTCTCTTTCTATCCGAAGCTATGGAGGGATAGAGGAGAAGTCAAGTAGTAGAACAAGA 917 Query 897 AGAAGAGATGGTGTGGTTTCACCATCTCCAAGATGGTCTAAAAGCTTAAGCTATGGAAGT 956 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 918 AGAAGAGATGTTGTGGTTTCACCATCTCCAAGATGGTCTAAAAGCTTAAGCTATGGAAGT 977 Query 957 GGAAGTAATAAGAGTAAGAACCTTCTTCCACCTAAAAGCAATACCCTTGAATCCTCAGAT 1016 |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 978 AGAAGTAATAAGAGTAAAAACCTTCTTCCACCTAAAAGCAATACCTTTGAATCCTCAGAT 1037 Query 1017 TCGATATCGAGGAAAAGAAGCTGGACAGAGACAGAGATTCTCTGGGATTCACTTCCTCCA 1076 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1038 CCGATATCAAGGAAACGAAGCTGGACAGAGACAGAGATTCTCTGGGATTCACTTCCTCCA 1097 Query 1077 AAAGTTGTAAATCTCGGAAAGGAAATTCTGAGACAGAGAGATACGGCTATTCGAGCTGCA 1136 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1098 AAAGTTGTAAATCTCGGAAAGGAAATTCTGAGACAGAGAGATACGGCTATTAGAGCTGCC 1157 Query 1137 TCCCAAGCTTTGTTAGAGGCTTCAGCTGCTGAAAGATTGCTCAAATGTCTAAGGTCATAC 1196 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1158 TCACAAGCTTTGTTAGAGGCTTCAGCTGCTGAAAGATTGCTCAAATGTCTAAGGTCATAC 1217 Query 1197 TCGGAGCTTTCGGACAGGAGAAACCAACATCAAGAAAATCAACAGCCACCAATTCAAGAT 1256 || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1218 TCTGAGCTTTCAGACAGGAGAAACCAACATCAAGAAAATCAACAGCCACCAATCCAAGAT 1277 Query 1257 TTCTTGAGTTTCCAAGCTGAGTTAAGCAAGAGCAGGCTCATCATTCAATCACTATCAACT 1316 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1278 TTCTTGAGTTTCCAGGATGAGTTAAGCAAGAGCAGGCTCATCATTCAATCACTATCAACT 1337 Query 1317 GAAAAAACAGAGCATTCCAACTCCAACATAGTCAAAACAGGAGATGAGAGACGCGAAAAG 1376 |||||||||||||| | |||| | |||||||||||||||||||||||||||||||||||| Sbjct 1338 GAAAAAACAGAGCACTGCAACGCAAACATAGTCAAAACAGGAGATGAGAGACGCGAAAAG 1397 Query 1377 GCGACTCAGTGGATCAAATCAGCATTAGCTACCGATCTCCAACTGGTTTCTTCTA-CCGC 1435 |||||||||||||||||||||||||| |||||||||||| |||||||||||| || |||| Sbjct 1398 GCGACTCAGTGGATCAAATCAGCATTGGCTACCGATCTCAAACTGGTTTCTT-TATCCGC 1456 Query 1436 AAGTAAGCCTACACAGAGCCCCGGGAGAAAGGGTCTTACCCTAATTGCTCAAGAAATTGA 1495 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1457 AAGCAAGCCTACACAGAGCCCCGGGAGAAAGGGTCTTACCCTAATTGCTCAAGAAAGTGA 1516 Query 1496 TAACCGTGAAGATAACACAAGCGAAAGCGACTCGGGATTGGGAGAGAGAAAGGAGAGGTT 1555 ||||||||||| |||| ||||||||||| |||| |||||||||||| |||||||||||| Sbjct 1517 TAACCGTGAAGGTAACGCAAGCGAAAGCAACTCAAGATTGGGAGAGATAAAGGAGAGGTT 1576 Query 1556 AAGCAGAGCATCGAGCGAACTTAGAAACTGGCTTAAGGAAGAAGGAAGAAGTTGGTATCT 1615 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1577 AAGCAGAGCATCGAGCGAACTCAGAAACTGGCTTAAGGAAGAAGGAAGAAGTTGGTACCT 1636 Query 1616 AAGCCGTGTTGAGAAGTATTTAGATGAGATCAGCAATGGAACAAAGTGGAGAGAAATGAG 1675 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1637 AAACCGTGTTGAGAAGTATTTAGATGAGATCAGCAATGGAACAAAGTGGAGAGAGATGAG 1696 Query 1676 CAGTCAACAAGTAGGGGAAACGATGTATCAGATAAAACGAGTGAGTGATTGGTTAGACGC 1735 ||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||| | Sbjct 1697 GAGTGAAGAAGTAGGGGAAACAATGTATCAGATAAAGCGAGTGAGTGATTGGTTAGACAC 1756 Query 1736 CATTGTTAAAGGAGAAGAAAATGAGGAAGAAGAAGAAATGGTGATGATGATGATGTCAGA 1795 ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||| Sbjct 1757 CATTGTTAAAGGAGAAGAAGATGAGGAAGAA-AAGA--TGGTGATGATGATGATGTCAGA 1813 Query 1796 GTTTGAAACAGAGGCTTGTGGTAGAGTGAGGAACAAGATTTATAGGATTCTCTTGAAACA 1855 || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1814 GTCTGAAACAGAGGCTTGTGGTAGAGTGAGGAACAAGATTTATAGGATTCTTTTGAAACA 1873 Query 1856 TGTTGAGACAACTTCTTTGTTAAGTCATCAACGTAGTACCAATCTCATGTCTAATcaaca 1915 ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| || Sbjct 1874 TGTTGAGACAACTTCTTTGTTAAGTCATCAACGAAGTACCAGTCTCATGTCTCATCATCA 1933 Query 1916 acaacaacaacaac-aacaacaCTTGTTCCAAAAGACGATGTCACTTTAG 1964 |||||||||||| | |||||||||||||||||||||| |||||||||||| Sbjct 1934 ACAACAACAACA-CGAACAACACTTGTTCCAAAAGACAATGTCACTTTAG 1982 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97288656210 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5