BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479477
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19610.1 | Symbols: | Plant protein of unknown function (DU... 3097 0.0
> AT3G19610.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr3:6812493-6814719 REVERSE LENGTH=1982
Length=1982
Score = 3097 bits (1677), Expect = 0.0
Identities = 1875/1970 (95%), Gaps = 15/1970 (1%)
Strand=Plus/Plus
Query 1 TAAACACATTAG-CTTCCACCGATCTTGTTCTTGTCTGTATGCAACAGATTGAGAAACGT 59
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 22 TAAACACATTAGAC-TCCACCAATCTTGTTCTTGTCTGTATGCAACAGATTGAGAAACGT 80
Query 60 AGCCTTCTCTGTTCGTTTCTCTCTGTGTTTCATCTGATACATTTACAAGCATTGCTT-TT 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 81 AGCCTTCTCTGTTCGTTTCTCTCTGTGTTTCATCTGATACATTTACAAGCATTGCTTCTT 140
Query 119 GGAAATGGCAGAACTAAGATCAGGTGTTCTTTTCAAGCTTCTAGAAGAAATGGGAGTCGG 178
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 G-AAATGGCAGAATTAAGATCAGGTGTTCTTTTCAAGCTTCTAGAAGAAATGGGAGTCGG 199
Query 179 GAAAGTGCGAAGAGACGTCGATCACAGACCGGTTTTGCTGCAGATAAGAAGCATAATCCC 238
|||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 200 GAAAGTGCGAAGAGACGTCGATCACAGACCCGTTTTGCTGCAAATAAGATGCATAATCCC 259
Query 239 TGTGTTAGCAGCTGGAGGATTATGGCCAAACAAAGGTTTCTTCTTGAGGATAACAGATTC 298
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TGTGTTAGCAGCTGGAGGGTTATGGCCAAACAAAGGTTTCTTCTTGAGGATAACAGATTC 319
Query 299 AACACACTCAATGTATGTATCATTGCCGCGAGAAGAGAACGATCTTGTTCTTTACGACAA 358
||||| ||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 320 GACACATTCAATATATGTCTCATTGCCACGAGAAGAGAACGATCTTGTTCTCTACGACAA 379
Query 359 GTTACAAATCGGGCAATTGATATTCATCGAGAAGCTTGAATTTGCTTATCCAGTTCCTAT 418
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 380 GTTACAAATCGGGCAATTGATATTCGTCGAGAAGCTTGAATTTGCTTATCCAGTTCCCAT 439
Query 419 GATCAAAGGCATTAGACCAACTCCAGGCCGAAGGGCTTGCACCGGTGATCCAATCGATCT 478
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 440 GATCAAAGGCATTAGACCAACACCTGGCCGAAGGGCTTGCACCGGTGATCCAATCGATCT 499
Query 479 AATCCCTAAAGAACGGATCGAAAAGTTCTGTGTCGGTCTATCGGATA-CGGAAGAAAACT 537
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 500 AATCCCTAAAGAACGGATCGAAAAGTTCTGTGTCGGTCTATCGGATATCG-AAGAAAACT 558
Query 538 ATGATCACCAAGTGAAGAAGCCAAGAAGAACGAGATGGAATAACTCAAGCGTCTCTGAGT 597
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 559 ACGATCACCAAGTGAAGAAGCCAAGAAGAACTAGATGGAATAACTCAAGCGTCTCTGAGT 618
Query 598 TAAATTTTACAGATTTGGGGTTATCGAAAAACCTTTCGAGTGTTATGGAAGAAAAGGATG 657
|||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 619 TAAACTTTACAGATTTAGGGTTATCGAAAAATCTTTCGAGTGTTATGGAAGAAAAGGATG 678
Query 658 ATACAGAGTCAATGATTTCGAGTTGCTCTTCGTCTTTTTCTTCAGTAGCTAGGAGAAGAA 717
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||
Sbjct 679 ATACAGAGTCAATGATTTCAAGTTGCTCTTCGTCTTTTTCTTCAGCAGCTAGGAGGAGAA 738
Query 718 GCTGGATAGGCTCAGG-TGATAATAGGAAGAGAAGAGAGTCGTTAGATCCATCCATGATT 776
||||||||||||| || ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 739 GCTGGATAGGCTC-GGCTGATAATAGGAAGAGAAGAGATTCATTAGATCCATCCATGATT 797
Query 777 AAGAATCATGATCATGACACTAAACATGCTTCAATTGCTCGAAGTTCTTCCGCTACTTCA 836
|||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 798 AAGAATCATGATCATGACACTAAACATGTTTCAAGAGCTCGAAGTTCTTCTGCTACTTCA 857
Query 837 CCTTCGCTGTCTATCCGAAGCTATGGAGGGATAGAGGAGAAATCAAGTAGTAGAACAAGA 896
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 858 CCTTCTCTTTCTATCCGAAGCTATGGAGGGATAGAGGAGAAGTCAAGTAGTAGAACAAGA 917
Query 897 AGAAGAGATGGTGTGGTTTCACCATCTCCAAGATGGTCTAAAAGCTTAAGCTATGGAAGT 956
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AGAAGAGATGTTGTGGTTTCACCATCTCCAAGATGGTCTAAAAGCTTAAGCTATGGAAGT 977
Query 957 GGAAGTAATAAGAGTAAGAACCTTCTTCCACCTAAAAGCAATACCCTTGAATCCTCAGAT 1016
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 978 AGAAGTAATAAGAGTAAAAACCTTCTTCCACCTAAAAGCAATACCTTTGAATCCTCAGAT 1037
Query 1017 TCGATATCGAGGAAAAGAAGCTGGACAGAGACAGAGATTCTCTGGGATTCACTTCCTCCA 1076
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 CCGATATCAAGGAAACGAAGCTGGACAGAGACAGAGATTCTCTGGGATTCACTTCCTCCA 1097
Query 1077 AAAGTTGTAAATCTCGGAAAGGAAATTCTGAGACAGAGAGATACGGCTATTCGAGCTGCA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1098 AAAGTTGTAAATCTCGGAAAGGAAATTCTGAGACAGAGAGATACGGCTATTAGAGCTGCC 1157
Query 1137 TCCCAAGCTTTGTTAGAGGCTTCAGCTGCTGAAAGATTGCTCAAATGTCTAAGGTCATAC 1196
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TCACAAGCTTTGTTAGAGGCTTCAGCTGCTGAAAGATTGCTCAAATGTCTAAGGTCATAC 1217
Query 1197 TCGGAGCTTTCGGACAGGAGAAACCAACATCAAGAAAATCAACAGCCACCAATTCAAGAT 1256
|| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1218 TCTGAGCTTTCAGACAGGAGAAACCAACATCAAGAAAATCAACAGCCACCAATCCAAGAT 1277
Query 1257 TTCTTGAGTTTCCAAGCTGAGTTAAGCAAGAGCAGGCTCATCATTCAATCACTATCAACT 1316
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TTCTTGAGTTTCCAGGATGAGTTAAGCAAGAGCAGGCTCATCATTCAATCACTATCAACT 1337
Query 1317 GAAAAAACAGAGCATTCCAACTCCAACATAGTCAAAACAGGAGATGAGAGACGCGAAAAG 1376
|||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1338 GAAAAAACAGAGCACTGCAACGCAAACATAGTCAAAACAGGAGATGAGAGACGCGAAAAG 1397
Query 1377 GCGACTCAGTGGATCAAATCAGCATTAGCTACCGATCTCCAACTGGTTTCTTCTA-CCGC 1435
|||||||||||||||||||||||||| |||||||||||| |||||||||||| || ||||
Sbjct 1398 GCGACTCAGTGGATCAAATCAGCATTGGCTACCGATCTCAAACTGGTTTCTT-TATCCGC 1456
Query 1436 AAGTAAGCCTACACAGAGCCCCGGGAGAAAGGGTCTTACCCTAATTGCTCAAGAAATTGA 1495
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1457 AAGCAAGCCTACACAGAGCCCCGGGAGAAAGGGTCTTACCCTAATTGCTCAAGAAAGTGA 1516
Query 1496 TAACCGTGAAGATAACACAAGCGAAAGCGACTCGGGATTGGGAGAGAGAAAGGAGAGGTT 1555
||||||||||| |||| ||||||||||| |||| |||||||||||| ||||||||||||
Sbjct 1517 TAACCGTGAAGGTAACGCAAGCGAAAGCAACTCAAGATTGGGAGAGATAAAGGAGAGGTT 1576
Query 1556 AAGCAGAGCATCGAGCGAACTTAGAAACTGGCTTAAGGAAGAAGGAAGAAGTTGGTATCT 1615
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1577 AAGCAGAGCATCGAGCGAACTCAGAAACTGGCTTAAGGAAGAAGGAAGAAGTTGGTACCT 1636
Query 1616 AAGCCGTGTTGAGAAGTATTTAGATGAGATCAGCAATGGAACAAAGTGGAGAGAAATGAG 1675
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1637 AAACCGTGTTGAGAAGTATTTAGATGAGATCAGCAATGGAACAAAGTGGAGAGAGATGAG 1696
Query 1676 CAGTCAACAAGTAGGGGAAACGATGTATCAGATAAAACGAGTGAGTGATTGGTTAGACGC 1735
||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
Sbjct 1697 GAGTGAAGAAGTAGGGGAAACAATGTATCAGATAAAGCGAGTGAGTGATTGGTTAGACAC 1756
Query 1736 CATTGTTAAAGGAGAAGAAAATGAGGAAGAAGAAGAAATGGTGATGATGATGATGTCAGA 1795
||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct 1757 CATTGTTAAAGGAGAAGAAGATGAGGAAGAA-AAGA--TGGTGATGATGATGATGTCAGA 1813
Query 1796 GTTTGAAACAGAGGCTTGTGGTAGAGTGAGGAACAAGATTTATAGGATTCTCTTGAAACA 1855
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1814 GTCTGAAACAGAGGCTTGTGGTAGAGTGAGGAACAAGATTTATAGGATTCTTTTGAAACA 1873
Query 1856 TGTTGAGACAACTTCTTTGTTAAGTCATCAACGTAGTACCAATCTCATGTCTAATcaaca 1915
||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||
Sbjct 1874 TGTTGAGACAACTTCTTTGTTAAGTCATCAACGAAGTACCAGTCTCATGTCTCATCATCA 1933
Query 1916 acaacaacaacaac-aacaacaCTTGTTCCAAAAGACGATGTCACTTTAG 1964
|||||||||||| | |||||||||||||||||||||| ||||||||||||
Sbjct 1934 ACAACAACAACA-CGAACAACACTTGTTCCAAAAGACAATGTCACTTTAG 1982
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97288656210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5