BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479481
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19640.1 | Symbols: MGT4, MRS2-3 | magnesium transporter 4 |... 2392 0.0
> AT3G19640.1 | Symbols: MGT4, MRS2-3 | magnesium transporter 4
| chr3:6820926-6823306 FORWARD LENGTH=1700
Length=1700
Score = 2392 bits (1295), Expect = 0.0
Identities = 1493/1587 (94%), Gaps = 19/1587 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTGATCACAACAATCGTAAGCGCGATGAGAGGCGGAGCTAGAGCCGATGAATTCA 60
|||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||||
Sbjct 17 TCTCTCTGATCACAACAATCATAA--GCGATGAGA---GGAGCTAGACCCGATGAATTCA 71
Query 61 ATTTCAATACGAATCCATCAACGCCAAACACTGGTCAGCCGACACCGATGTACCCCGCCG 120
|||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 72 ATTTTAGTACGAATCCATCAACGCCAAACACTGGTCAGCCGACACCGACGTACCCCGCCG 131
Query 121 GTGTT-G-TG-GGTGGCGGCGGACGGAAGAAAGGCGTTGGCGTGAGGTCGTGGTTGGTAC 177
||||| | | || ||||| ||| |||| |||||||||||||||||| ||||||||||||
Sbjct 132 GTGTTGGCGGCGGCGGCGGTGGAAGGAAAAAAGGCGTTGGCGTGAGGACGTGGTTGGTAC 191
Query 178 TCGACTCGTCAGGG-AAGTCGGATCTAAAGGAAGAAGGGAAACACTCCATCATGCGGCGA 236
| ||||||||||| || ||||| | |||||||||||||||||||||||||||||||||
Sbjct 192 TTAACTCGTCAGGGCAA-TCGGAGCCGAAGGAAGAAGGGAAACACTCCATCATGCGGCGA 250
Query 237 ACGGGATTGCCGGCGAGAGATCTTCGGATTCTCGATCCACTGTTGTCGTATCCATCTACT 296
|||||||| |||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 251 ACGGGATTACCGGCGCGTGATCTTAGGATTCTCGATCCACTGTTGTCGTATCCATCTACT 310
Query 297 GTTTTAGGGAGAGAGAGAGCGATTGTCATCAATTTGGAGCATATCAAGGCAATCATCACC 356
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GTTTTAGGTAGAGAGAGAGCGATTGTCATCAATTTGGAGCATATCAAGGCAATCATCACT 370
Query 357 GCTCAAGAAGTGTTGTTGCTTAATTCCAAGGATCCTTCCGTGTCACCCTTTATCGATGAG 416
||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 371 GCTCAAGAAGTTTTGTTGCTTAATTCCAAGGATCCTTCGGTCTCACCCTTTATTGATGAG 430
Query 417 TTGCAGAGGCGGATTCTCTGTCGCCATCACGCCACTAACCCTCAGGAGGAACATAAATCT 476
|||||||||||||||||||||| ||||||||||||||| ||||||||||| || || |||
Sbjct 431 TTGCAGAGGCGGATTCTCTGTCACCATCACGCCACTAAACCTCAGGAGGAGCAGAACTCT 490
Query 477 GAGGGAGAGCCTCATACGAGGACAGATCCTGCCCAAGGAGAAGCTGGAACGCCACAATCA 536
| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 491 GGGGGAGAGCCTCATACGAGGGTAGATCCTGCCCAAGGAGAAGCTGGAACGGAACAATCT 550
Query 537 TCTGGGGATCAAGGGAGTGAAGCCAAGAAGGATGCCAAGCAAAGTCTTGAGAATCAAGAT 596
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 551 TCTGGGGATCAAGGGAGTGAAGCCAAGAAGGATGCGAAGCAAAGTCTTGAGAATCAAGAT 610
Query 597 GGAT-GTAAGGTTCTTCCATTTGAGTTTGTTGCTCTGGAAGCCTGTCTTGAAGCTGCATC 655
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GGATCG-AAGGTTCTTCCATTTGAGTTTGTTGCTCTGGAAGCCTGTCTTGAAGCTGCATC 669
Query 656 AAGCAGTTTGGAACATGAGGCCTTAAGATTGGAGTTAGAGGCTCATCCAGCCCTGGACAA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 AAGCAGTTTGGAACATGAGGCCTTAAGATTGGAGTTAGAGGCTCATCCAGCCCTGGACAA 729
Query 716 GCTTACTTCCAAGATCAGTACCCTTAATTTGGAGCGGGTTCGACAGATTAAAAGCAGGCT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 GCTTACTTCCAAGATCAGTACCCTTAATTTGGAGCGGGTTCGACAGATTAAAAGCAGGCT 789
Query 776 GGTTGCAATAACTGGACGTGTTCAGAAGGTTAGGGACGAGTTAGAACATCTGCTAGACGA 835
|||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 790 GGTTGCAATAACTGGACGTGTTCAGAAGGTGAGGGATGAGCTAGAACATCTGCTAGACGA 849
Query 836 TGATGAAGATATGGCTGAGATGTATCTTACGGAGAAGTTAGCTCAGAAACTTGAGGATTC 895
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 850 TGATGAAGATATGGCTGAGATGTATCTTACAGAGAAGTTAGCTCAGAAACTTGAGGATTC 909
Query 896 GTCAAATTCTTCTATGAATGAGAATGATACCTTCGAGGTTGATCTTCCTCAAGGAGACGA 955
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 910 GTCAAATTCCTCTATGAATGAGAGTGATACCTTCGAGGTTGATCTTCCTCAAGGAGATGA 969
Query 956 GGATGACAGGCTTCCTCCCGAATTTGCATC-GTTGGCTAACAGAGATGAAAGATATCTAC 1014
|||||||||||||||||||||||||||||| | |||||||||||||| ||| ||||| |
Sbjct 970 GGATGACAGGCTTCCTCCCGAATTTGCATCAGA-GGCTAACAGAGATGGAAGGTATCTTC 1028
Query 1015 ATGGAAATGATGATCACCATCTTCTTATGAGTGCTCACAGTGCACTTAGCAGAAATAGCC 1074
| | |||||||| |||| | |||||||||||| |||| ||||||||||||||||||||||
Sbjct 1029 AAGCAAATGATGCTCACGAGCTTCTTATGAGTACTCAAAGTGCACTTAGCAGAAATAGCC 1088
Query 1075 GTGGGACTAATACAAGCTCAACCCGGAGTGCGATGACCAACAAATTAGATGTGGAAGAGC 1134
|||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1089 GTGGGACTCACACAAGCTCAACCCGGAGTGCCATGACCAACAAATTAGATGTGGAAGAGC 1148
Query 1135 TTGAAATGCTTTTGGAAGCATATTTTGTGCAGATCGATGGTATACTGAACAAACTATCAA 1194
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1149 TTGAAATGCTTTTGGAAGCATATTTCGTGCAGATCGATGGTATACTGAACAAACTATCAA 1208
Query 1195 CACTAAGGGAATATGTGGATGACACGGAGGACTACATCAACATAATGCTAGATGACAAGC 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CACTAAGGGAATATGTGGATGACACGGAGGACTACATCAACATAATGCTAGATGACAAGC 1268
Query 1255 AGAATCATCTTCTGCAGATGGGTGTGATGCTAACAACAGCTACTCTGGTGATGAGCGCCT 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AGAATCATCTTCTGCAGATGGGTGTGATGCTAACAACAGCTACTCTGGTGATGAGCGCCT 1328
Query 1315 TTATCGCAGTTGCTGGTGTATTTGGTATGAATATTAAG-ATAGAGTTGTTCAAGGATACT 1373
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |
Sbjct 1329 TTATCGCAGTTGCTGGTGTATTTGGTATGAATAT-AACCATAGAGTTGTTCACGGATAAT 1387
Query 1374 GAAGC-TGGTCCAAGTAGATTCATTTGGACTGTAATTGGAGGTTCTATCGGTAGTATATT 1432
|| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1388 AAA-CATGGTCCAAGTAGATTCATTTGGACTGTGATTGGAGGTTCTATCGGCAGTATATG 1446
Query 1433 CCTTTACGTAAGTGTCATCGGGTGGTGCAAGTACAAGCGCCTTCTTGAATGAGTCGACCA 1492
||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 CCTCTACGTTGGTGCCATCGGGTGGTGCAAGTACAAGCGCCTTCTTGAATGAGTCGACCA 1506
Query 1493 ACAACATATTGGGAGAGGAGAATAATGTCGCTTTGCCACAAATCTATTTAATCTAACGAG 1552
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 1507 ACAACATATTGGGAGAGGAGAATAATGTCGCATTGCCACAAATCTATTTAAGCTAACAAG 1566
Query 1553 ACTTTTTATGTATATCCTTCGTTCTTG 1579
|||||| |||||||||||| |||||||
Sbjct 1567 ACTTTT-ATGTATATCCTTTGTTCTTG 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77961446385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5