BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479482
Length=937
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19650.1 | Symbols: | cyclin-related | chr3:6823508-6825261... 1247 0.0
> AT3G19650.1 | Symbols: | cyclin-related | chr3:6823508-6825261
FORWARD LENGTH=1031
Length=1031
Score = 1247 bits (675), Expect = 0.0
Identities = 871/961 (91%), Gaps = 31/961 (3%)
Strand=Plus/Plus
Query 1 AGCCCTAAAATTTCATCGGAGAAGAGAAACATGTCGACGAGGCGAGAAAGCAGAGATTCA 60
|||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 7 AGCCCTAAAATTTCTTCGGTG-AGAGAAACATGTCGACGAGGCGAGAAAGCAGAGATTCA 65
Query 61 GACCCTAGAAGACAGCGTTCAAGAATCGATCGCGAACCCAGCCCCAAGAGATCAAGGAGA 120
||||||||| | || ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 66 GACCCTAGACGTCACCGTTCTAGAATCGATCGCGAACCCAGCCCTAAGAGATCAAGAAGA 125
Query 121 GATGGCAAACCTGAAGCTGAACGAGTTCTGATTAAGAAGGATTTGGATGTTAGGGAGGGT 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 126 GATGGCAAACCTGAAGCTGAACGAGTTCTGAGTAAGAAGGATTTGGATGTTAGAGATGGT 185
Query 181 ACTGATGCAGAGAAGAAAC-CACGTCAGTCCTTGAGAGATGCTGCGCCGTTGGAACCTGA 239
||||| | ||||| |||| |||||||||| |||||||||||| | | ||||||| |||
Sbjct 186 ACTGACACTGAGAA-AAACTCACGTCAGTCTTTGAGAGATGCT-C-CA-TTGGAACTTGA 241
Query 240 TGCTCATGGTTCGAAAAAAGACAGTG-GAAAGAAGCACTCCGGGCATCATGAGACCACCA 298
|||||||||||||| ||||||||||| ||| ||||||||| || ||||||||||||||||
Sbjct 242 TGCTCATGGTTCGAGAAAAGACAGTGAGAA-GAAGCACTCTGGACATCATGAGACCACCA 300
Query 299 AA-CAAGCTTCCCATCTATCTCAAGTGCCTCGTTCTAGACCATATTCTCAGCATGATGAT 357
|| || ||| ||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 301 AAGCA-GCTCCCCATCTGTCACAAGTACCTCGTTCTAGACCATATTCTCAGCATGATGAT 359
Query 358 CTTCCTAGTGATGGAAAAGGTGACAGAAGACCAACTTCTGAGAGAGGATCTTGGAGAAGT 417
| || |||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||
Sbjct 360 CGTCGTAGTGATGGAAAAGTTGATAGAAGACCAACTTCTGTGAGAGGATCGTGGAGAAGT 419
Query 418 TCAAGAGATAAGAGTAACCGAAGAGGTGGAGATGATGACAAGTCACAGCATCGTAAAGAC 477
||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 420 TCAAGAGATCAGAGTAACCGAAGAGCTGGAGATGATGAGAAGTCACAGCATCGTAAAGAC 479
Query 478 GAAGACAAAAGCTCGTGGCGACATGATAG---C-G--A---------CACCCAAGGAGCA 522
|||||||||||||| |||||||||||||| | | | |||||||||||||
Sbjct 480 GAAGACAAAAGCTCATGGCGACATGATAGGTTCCGTGAGAGTGATGACACCCAAGGAGCA 539
Query 523 CTCTCTAGGAAACGACCGGCCTTCAGGGAGAAGAAGATCACAGAGG-----GG-AATAAC 576
||||||||||||||||| |||||||||||||||||||| |||||| || || |||
Sbjct 540 CTCTCTAGGAAACGACCAGCCTTCAGGGAGAAGAAGATTGCAGAGGAAACTGGGAACAAC 599
Query 577 ACAGAGAGAACAAGAACTGAGGAGGGAAAAGATACAAATCTAAACTATGGCAGACAGAAC 636
||||| ||||||||||||||||| |||||||| || ||||||||| || |||||||||||
Sbjct 600 ACAGACAGAACAAGAACTGAGGATGGAAAAGACACTAATCTAAACAATCGCAGACAGAAC 659
Query 637 GAGAGAAACTGGAGGAGAAATATGCATTCAGAAAGACATGAGAGACCAGCAATGGGAAGA 696
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGAGGAACTGGAGGAGCAATACGCATTCAGAAAGACATGAGAGACCAGCAATGGGAAGA 719
Query 697 GACAGAGTGTGGAACAGAGATGATGAAAGAGGCGCGGGAAGCAGACAGAGTTATCGAGTT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 720 GACAGAGTGTGGAACAGAGATGATGAAAGAGGCGCGGGAAGCAGACAGAGTTATCAAGCT 779
Query 757 GATAGAGACAGATTCCACGGCAATGGGCGAAGTGGGTTTAGCGGAAGCTGGGCAAGGAAT 816
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 GATAGAGACAGATTCAACGGCAATGGGCGAAGTGGGTTTAGCGGAAGCTGGACAAGGAAT 839
Query 817 GAGAAGAAATGGGACCATGACTTGTTCGAGGAGGCGAACAAGAGTCCAGCCAAAGCCACT 876
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 840 GAGAAGAAATGGGACCATGACTTGTTCGATGAGGCGAACAAGAGTCCAGCTAAAGCCACC 899
Query 877 GAGGAAGAACAGATTGCAAAAGTTGAAGCTTTGTTGGCTTCTTGAAGCAGCATATGTTAT 936
|||||||||||||| || |||||||||||||||||||||||||||||| || ||||| ||
Sbjct 900 GAGGAAGAACAGATAGCTAAAGTTGAAGCTTTGTTGGCTTCTTGAAGCTGCTTATGTCAT 959
Query 937 G 937
|
Sbjct 960 G 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45813542064
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5