BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479483

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19660.1 | Symbols:  | unknown protein; Has 16 Blast hits to...   534    2e-151


> AT3G19660.1 | Symbols:  | unknown protein; Has 16 Blast hits 
to 16 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:6825521-6826006 REVERSE LENGTH=486
Length=486

 Score =  534 bits (289),  Expect = 2e-151
 Identities = 401/452 (89%), Gaps = 19/452 (4%)
 Strand=Plus/Plus

Query  1    AAAGCGTAACGTTTTAGAGTTAAAAGATCAAAACAAACGCAT-AA-ATGTCTGAGGAGCT  58
            ||||||| |||||||||||| ||||||| ||||| ||||||| || ||||| ||||||||
Sbjct  2    AAAGCGTTACGTTTTAGAGTAAAAAGATAAAAACTAACGCATAAATATGTCAGAGGAGCT  61

Query  59   ACGACTACAAAAAGTGAAATCTTCTTCTTTCTTAGTTATTTAGGGTTCTTTAGAGAATCa  118
             | |||||||||| || ||   || |||||||||||||||||||||||||||||||| ||
Sbjct  62   GCAACTACAAAAATTG-AA---TCGTCTTTCTTAGTTATTTAGGGTTCTTTAGAGAAGCA  117

Query  119  agaagaagaagaagaaCATGGGATTACAGTTGGAGAGCTTGATGGAGACGATAAAGTCAA  178
            ||||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct  118  AGAAGGAGAAGGAGAAGATGGGATTACAGTTGGAGAGTTTGATGGAGACGATAAAGTCAA  177

Query  179  AGGTGGGTTTGTTGAGGAAGAAGAAGAAACCTTACATCAAAATGGATAAAAGCTCCAGCG  238
            ||||| ||||| | ||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct  178  AGGTGAGTTTGCTAAGGAAGAAGAAGAAAACTTACATCAAAATGGACAAAAGCTCCAGCG  237

Query  239  TCAGAGTTGCGATCCGTCGTAAGAAGACTAGAGATCTCATCGATAAGACCTTGAAGGTTG  298
            ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  238  TCAGAGTCGCCATCCGTCGTAAGAAGACTAGAGATCTCATCGATAAGACCTTAAAGGTCG  297

Query  299  CTGATCGCCCTGGCAAGCGAACTCTTTTCTGATAAAACTTCTT-TTATTG--------C-  348
            ||||||| |||||||| ||||||||||||| |||| ||||||| || ||         | 
Sbjct  298  CTGATCGTCCTGGCAAACGAACTCTTTTCTAATAATACTTCTTCTTCTTCTTTTTTTTCT  357

Query  349  CTCATATTTTGC-ATGTCATTTTTTGTTCTTCTTCCTTCAGTGATTTGGTGTTTTTGATT  407
            |||||||||||| ||  ||||||||||| |||||| ||||||||||||||||||||||||
Sbjct  358  CTCATATTTTGCCAT--CATTTTTTGTTGTTCTTCGTTCAGTGATTTGGTGTTTTTGATT  415

Query  408  CAGGAGATCAAGTTTGTGATAATATGTATAGT  439
            |||||||||| |||||||||||||||||||||
Sbjct  416  CAGGAGATCATGTTTGTGATAATATGTATAGT  447



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5