BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479485
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19680.1 | Symbols: | Protein of unknown function (DUF1005)... 2564 0.0
AT1G50040.1 | Symbols: | Protein of unknown function (DUF1005)... 350 4e-95
AT3G19690.1 | Symbols: | CAP (Cysteine-rich secretory proteins... 174 2e-42
> AT3G19680.1 | Symbols: | Protein of unknown function (DUF1005)
| chr3:6840281-6842320 FORWARD LENGTH=1856
Length=1856
Score = 2564 bits (1388), Expect = 0.0
Identities = 1628/1740 (94%), Gaps = 32/1740 (2%)
Strand=Plus/Plus
Query 82 tcaatcttAAAACGTT--GTATCC--AAATCTTAAACTCAATGGATCCGTGCTCTTTCGT 137
||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 128 TCAATCTTAAATCGTTGAGTATCCAAAAATCTTAAACTCAATGGATCCGTGCTCTTTCGT 187
Query 138 ACGGATCATCGTCGGTAACTTGGCCGTTAGGTTTCAGTCATCG------TCTTCTTC-T- 189
||||||||| ||||||||||||||||||||||||| ||| ||| |||||||| |
Sbjct 188 ACGGATCATAGTCGGTAACTTGGCCGTTAGGTTTCCGTCGTCGTCTTCTTCTTCTTCTTC 247
Query 190 -TCGTCAGGACCGTCTGTTTCCGGTATCAATCCGTCGGCTCCTAACTGTTACTGCAAAAT 248
|| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 248 CTCATCAGGACCGTCTGTTTCCGGAATCAATCCAACGGCTCCTAACTGTTACTGTAAAAT 307
Query 249 CAGATTCAAGAATTTTCCTCGCGAGATTGTTTCTATTCCGGTTATGTTCCGAACTGAATC 308
|||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 308 CAGATTCAAGAACTTTCCTCGTGAGATTGTTTCTGTTCCGGTTATGTTCCGAACTGAATC 367
Query 309 TGAATCCGAGACTCGTTG-T--TCCTCCGGTAACGTCTCTACCGTCGCTGCTTGTTTCAG 365
|||||||||||||||||| | |||||||||||||| || ||||| ||||||||||||||
Sbjct 368 TGAATCCGAGACTCGTTGCTCCTCCTCCGGTAACGTATCCACCGTTGCTGCTTGTTTCAG 427
Query 366 TTTAAGTAAAGCTCAGATCGAAGCGTCTTTGAAGAAACCTAAGTTGAGTGTTCTCTCCGT 425
||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 428 TTTAAGTAAAGCTCAGATCGAAGCGTCGTTGAAGAAACCTAAATTTAGTGTTCTCTCCGT 487
Query 426 TGAGGCTTTTTCCCGCGGAAATTGCGACGGAGACGACGGTGTTAGCGGCGCGTCGTGTGG 485
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 488 TGAGGCTTATTCCCGCGGAAATAGCGACGGAGACGACGGTGTTAGCGGCGCGTCGTGTGG 547
Query 486 ACTCGCTACGGCGGGTGAGAAGTTGCTTGGTCGATTTGAGGTTTCG-TTGGATTTGAAAT 544
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 548 ACTCGCTACGGCGGGTGAGAAGTTGCTTGGTCGATTTGAGGTTTCGCTT-GATTTGAAAT 606
Query 545 CGGCGGAGGCGAAGACTTGTTTGGCGCATAACGGTTGGGTTGCTTTACCGTCTAAGAAAT 604
|||||||| |||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 607 CGGCGGAGACGAAGAGTTTTTTGGCGCATAACGGTTGGGTTGCTTTGCCGTCTAAGAAAA 666
Query 605 CGAAGAGTAAATCTGGATCCGATCCGGAGCTCCATGTTAGCGTTCGGGTCGAACCTGACC 664
||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 667 CGAAGAGTAAAACTGGATCCGATCCGGAGCTCCACGTTAGCGTACGGGTCGAACCTGACC 726
Query 665 CGAGATTCGTGTTTCAGTTCGACGGCGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTCC 724
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 727 CGAGATTCGTGTTTCAGTTCGACGGTGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTTC 786
Query 725 AAGGAAACACTAAGCAAGCCGTGTTCACTTGCAAGTTCGGCTCCAGAAACTCCAACTCCG 784
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 787 AAGGAAACACAAAGCAAGCCGTGTTCACTTGCAAATTCGGCTCTAGAAACTCCAACTCCG 846
Query 785 GTGATCGGAATCTTCTTCACAGTTCTTCGATGATGTCTGAG-TCAAGCTCAACGAGAAGT 843
||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 847 GTGATCGAAATCTTCTTCACAGTTCTTCGATGATGTCTGAGAT-AAGCTCAACGAGAAGT 905
Query 844 TGTATATCGTCGATGAATTCGGAAAAAGAACAACCGTCGAAAGAGAGAAAAGGATGGTCA 903
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 906 TGTATATCGTCGATGAATTCGGAAAAAGAACAACCGTCAAAAGAGAGAAAAGGATGGTCA 965
Query 904 ATAACAGTCCATGATCTTTCCGGTTCACCCGTGGCGATGGCCTCTATGGTTACACCTTTC 963
||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 966 ATAACGGTCCATGATCTCTCCGGTTCACCCGTGGCTATGGCCTCTATGGTAACACCTTTC 1025
Query 964 GTACCATCTCCTGGTTCGAACCGGGTCAATCGATCAAGTCCCGGAGCGTGGCTTATTCTT 1023
|||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 1026 GTACCATCTCCTGGTTCGAACCGGGTGACTCGGTCAAGTCCCGGAGCGTGGCTTATTCTT 1085
Query 1024 CGACCTGACGGTTGCACATGGAAACCATGGGGAAGACTAGAGGCATGGCGTGAAGCTGGT 1083
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 1086 CGACCTGACGGTTGCACATGGAAGCCATGGGGAAGACTAGAAGCATGGCGTGAGGCTGGT 1145
Query 1084 TACTCCGACACACTCGGTTACCGTTTTGAGCTTTTCCTAGACGGAATCGCCACAGCCGTC 1143
||||| ||||| || ||||| ||||| |||||||||| |||||| || ||||| || ||
Sbjct 1146 TACTCTGACACTCTAGGTTATCGTTTCGAGCTTTTCCAAGACGGTATAGCCACCGCAGTT 1205
Query 1144 TCCGCATCTTCGTCTATCAGTTTGAAAAATGGCGGGAGTTTCGTTATCGACGTTACCGGC 1203
|| ||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||
Sbjct 1206 TCTGCATCGTCGTCGATCAGTTTGAAAAATGGCGGGAGTTTTGTTATTGATGTTACCGGC 1265
Query 1204 GGGACAACCACGACGGCGTCAACGCCGACGACGAGTCCTCAAGGAAGCTGGGATCTCGGA 1263
|| |||| ||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1266 GGTACAAGCACAACGGCGTCTACGCCGACAACGAGTCCTCAAGGAAGCTGGGATCTCGGA 1325
Query 1264 TCCGGTTCAAGCG-CGGATTCGAGACCCGCGTCGAGACCAGGATCAGGATCCGGGTCGGA 1322
||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1326 TCCGGTTCAAGCGCCGG-TTCAAGACCCGCGTCGAGACCAGGATCAGGATCCGGGTCGGA 1384
Query 1323 TTTCGGATATTTACTACCGCAACATCCGTCGTCTGCGGCGGCGCAAAACAGAGGGTTCGT 1382
|||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1385 TTTCGGATATCTACTACCGCAACAT-C--CGTCTGCGGCCGCGCAAAACAGAGGGTTCGT 1441
Query 1383 GATGTCGGCTACGGTTGAAGGAGTTGGGAAACGAAGCAAACCGGAAGTAGAAGTCGGTGT 1442
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1442 TATGTCGGCTACGGTTGAAGGAGTTGGGAAACGAAGCAAACCAGAAGTAGAAGTCGGTGT 1501
Query 1443 GACGCACGTGACATGTACGGAGGATGCAGCAGCGCACGTGGCATTAGCTGCGGCGGTGGA 1502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 GACGCACGTGACATGTACGGAGGATGCAGCAGCGCACGTGGCATTAGCTGCGGCGGTGGA 1561
Query 1503 TCTGAGTTTGGATGCTTGCAGGCTTTTCTCACACAAGCTAAGGAAAGAGCTGAGACAGCA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 TCTGAGTTTGGATGCTTGCAGGCTTTTCTCACACAAGCTAAGGAAAGAGCTGAGACAGCA 1621
Query 1563 AAGCCAGCTTGGTGTCGTTTGACTTGTTTCG-TTTGTCGTTTTACCAATTCATGAGTTGT 1621
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1622 AAGCCAGCTTGGTGTCGTTTGACTTGTTTCGCTTTGTCGTTTTACCAATTCATGAGTTGT 1681
Query 1622 CTTCCACTCACAtttttttttttttttttaattttctattttct-cttttAAGAGATAGC 1680
||||||||||||||||||| ||| ||||||||||||| | ||||| | |||||||
Sbjct 1682 CTTCCACTCACATTTTTTTGGTTTG----AATTTTCTATTTTTTTCTTTTTA-AGATAGC 1736
Query 1681 GTTAGGAATTAGCCAGCCAATTTTTTGAGAGGTGGATGTCATCATTATTATAAATTGTTA 1740
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1737 GTTAGGAATTAGCCAGCCATTTTTTTGAGAGGTGGATGTCATCATTATTAAAAATTGTTA 1796
Query 1741 ATATCTTTCTCTGTACAGCTAAGAAATGACAGTAACAACTAACAAACAACTCATTATCTC 1800
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 ATATCTTTCTCAGTACAGCTAAGAAATGACAGTAACAACTAACAAACAACTCATTATCTC 1856
> AT1G50040.1 | Symbols: | Protein of unknown function (DUF1005)
| chr1:18542130-18543948 FORWARD LENGTH=1614
Length=1614
Score = 350 bits (189), Expect = 4e-95
Identities = 537/693 (77%), Gaps = 71/693 (10%)
Strand=Plus/Plus
Query 116 CAATGGATCCGTGCTCTTTCGTACGGATCATCGTCGGTAACTTGGCCGTTAGGTTT-C-A 173
|||||||||| |||||||||||||| ||||||||||| || ||||| ||||||||| | |
Sbjct 105 CAATGGATCCTTGCTCTTTCGTACGCATCATCGTCGGGAATTTGGCGGTTAGGTTTCCGA 164
Query 174 G-TCA---TCG------TC-T--TCTTCTTCGTCA---GGACCGTCTGTTTCCGGTATCA 217
| ||| ||| || | |||||||| ||| ||||||||||||| ||| ||
Sbjct 165 GATCACCGTCGTCATCATCGTCGTCTTCTTCTTCATCTGGACCGTCTGTTT-CGG-ATGT 222
Query 218 ATCCGTCGGCTCCTAACTGTTACTGCAAAATC-AGATTCAAGAATTTTCCTCGCGAGATT 276
|||| | || ||| || || || |||||| || ||||||| ||| || ||| |||||
Sbjct 223 ATCC-T---CTGGTAATTGCTATTGTAAAATCAAG-TTCAAGAGTTTCCCACGCCAGATT 277
Query 277 GTTTCTATTCCGGTTATGTTCCGAACTGAATCTGAATCCGAGACTCGTTGTTCCTCCGGT 336
|||||| |||| ||| |||| ||||| ||||| ||||| ||| |||| |||| ||||||
Sbjct 278 GTTTCTGTTCCCGTTCTGTTGCGAACCGAATCGGAATCAGAGTCTCGGTGTTGTTCCGGT 337
Query 337 AACGTCTCTACCGTCGCTGCTTG-TTTCAGTTTAAGTAAAG-CTCAGATCGAAG-CGTCT 393
|||||||| |||||||||||||| ||| ||| ||||| ||| ||||||| | || |||||
Sbjct 338 AACGTCTCAACCGTCGCTGCTTGCTTT-AGTCTAAGT-AAGTCTCAGATTG-AGACGTCT 394
Query 394 -TTGAAGAAACCTAAGTTGAGTGTTCTCTCCGTTGAGGCTTT-TTCCCGCGGAAATTGCG 451
|| ||||| |||| | ||||||||||||||| |||| ||| || ||| | |
Sbjct 395 CTT-AAGAAGGCTAAATGGAGTGTTCTCTCCGTCGAGG-TTTACTCTCGCCG----T--- 445
Query 452 ACGGAGACGACGGTGTTAGCGGCGCGTCGTGTGGACTCGCTACGGCGGGTGAGAAGTTGC 511
| | | || | ||| | | | | ||| | || ||| | | ||||||||| ||
Sbjct 446 A--GTG-CGTC-GTG-T----G-G-AT-TTGTCG-CT-GCTTC--C-GGTGAGAAGCTGA 488
Query 512 TTGGTCGATTTGAGGTTTCG-TTGGATTTGAAATCGGCGGAGGCGAAGACTTGTTTGGCG 570
||||||| ||| ||||| || || |||||||| |||||||| | ||||| ||||||||
Sbjct 489 TTGGTCGGTTTCAGGTTACGCTT-GATTTGAAGGCGGCGGAGTCAAAGACGTGTTTGGCA 547
Query 571 CATAACGGTTGGGTTGCTTTACCGTCTAAGAAATCGAAG---AGT-A-AA-TCTGGATCC 624
|| ||||| ||||||| ||| | | | ||||||||| | | | || || || ||
Sbjct 548 CACAACGGCTGGGTTGATTT--GGGC-ACTAAATCGAAGAATAATAAGAAGTCCGGGTCG 604
Query 625 GATCCGGAGCTCCATGTTAGCGTTCGGGTCGAACCTGACCCGAGATTCGTGTTTCAGTTC 684
||||| |||||||| |||||||| ||||| ||||| ||| |||| || |||||||| |||
Sbjct 605 GATCCTGAGCTCCACGTTAGCGTACGGGTTGAACCCGACACGAGGTTTGTGTTTCAATTC 664
Query 685 GACGGCGAGCCTGAGTGTAGTCCTCAGGTTTTTCAAGTCCAAGGAAACACTAAGCAAGCC 744
||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||
Sbjct 665 GACGGCGAGCCCGAGTGTAGTCCTCAGGTTTTTCAAGTCCAAGGAAACGCAAAACAAGCT 724
Query 745 GTGTTCACTTGCAAGTTCGGCTCCAGAAACTCC 777
|| ||||||||||||||||| | ||||||||||
Sbjct 725 GTTTTCACTTGCAAGTTCGGGTTCAGAAACTCC 757
> AT3G19690.1 | Symbols: | CAP (Cysteine-rich secretory proteins,
Antigen 5, and Pathogenesis-related 1 protein) superfamily
protein | chr3:6842220-6842856 REVERSE LENGTH=637
Length=637
Score = 174 bits (94), Expect = 2e-42
Identities = 98/100 (98%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 1701 TTTTTTGAGAGGTGGATGTCATCATTATTATAAATTGTTAATATCTTTCTCTGTACAGCT 1760
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 636 TTTTTTGAGAGGTGGATGTCATCATTATTAAAAATTGTTAATATCTTTCTCAGTACAGCT 577
Query 1761 AAGAAATGACAGTAACAACTAACAAACAACTCATTATCTC 1800
||||||||||||||||||||||||||||||||||||||||
Sbjct 576 AAGAAATGACAGTAACAACTAACAAACAACTCATTATCTC 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5