BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479490
Length=2463
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19720.1 | Symbols: ARC5, DRP5B | P-loop containing nucleosi... 3873 0.0
> AT3G19720.1 | Symbols: ARC5, DRP5B | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr3:6850371-6855513
REVERSE LENGTH=2678
Length=2678
Score = 3873 bits (2097), Expect = 0.0
Identities = 2279/2365 (96%), Gaps = 20/2365 (1%)
Strand=Plus/Plus
Query 16 GTGACGGTTGAGAAAATGTCGGAGGAGGAGGACGACGCTGCGATTGAGGAGCGGTGGAGT 75
|||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||||
Sbjct 149 GTGACGGTTGAGGAAATGGCGGA--A-GAGGACGACGCTGCGATTGAGGAGCGGTGGAGT 205
Query 76 CTTTACGAAGCTTACAATGAGTTACACGCTTTGGCGCAGGAATTGGAGACGCCGTTCGAA 135
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CTTTACGAAGCTTACAACGAGTTACACGCTTTGGCGCAGGAATTGGAGACGCCGTTCGAA 265
Query 136 GCACCGGCGGTTCTTGTGGTGGGACAGCAGACGGACGGTAAGAGTGCGCTTGTTGAAGCT 195
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 266 GCACCGGCGGTTCTTGTGGTGGGACAGCAGACCGACGGTAAAAGTGCGCTTGTGGAAGCT 325
Query 196 CTTATGGGGTTTCAATTTAACCACGTCGGCGGCGGAACCAAGACTCGCCGGCCGATTACT 255
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 326 CTTATGGGGTTTCAATTTAACCATGTCGGCGGCGGAACCAAGACTCGTCGGCCGATTACT 385
Query 256 CTTCATATGAAGTACGATCCTCAGTGTCAATTCCCGCTTTGCCATCTCGGATCTGATGAC 315
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 386 CTCCATATGAAGTACGATCCTCAGTGTCAATTCCCGCTTTGTCATCTCGGATCTGATGAT 445
Query 316 GATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAGGCATATATTGAAGCCGAG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 446 GATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAGGCATATATTGAGGCTGAG 505
Query 376 AACATGAGGCTGGAGCAAGAGCCA--T-GCCCATTCTCTGCCAAGGAGATTATTGTGAAA 432
|||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 506 AACATGAGGCTGGAGCAAGAGCCATGTAGCCCATTCTCTGCAAAGGAGATTATTGTGAAA 565
Query 433 GTGCAGTATAAGTATTGTCCCAACCTTACCATCATTGATACACCTGGACTTATAGCTCCT 492
|| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 566 GTCCAGTATAAGTATTGTCCAAACCTTACCATCATTGATACACCTGGACTTATTGCTCCT 625
Query 493 GCACCAGGATTGAAAAACCGAGCTCTCCAGGTTCAAGCACGGGCTGTGGAAGCTCTAGTC 552
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 626 GCACCAGGACTGAAAAACCGAGCTCTTCAGGTTCAAGCACGGGCTGTGGAAGCTCTAGTC 685
Query 553 CGAGCAAAGATGCAACACAAAGAGTTCATTATTTTATGCCTCGAAGATAGCAGTGACTGG 612
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 686 CGAGCAAAGATGCAACACAAAGAGTTCATCATTTTATGCCTCGAAGATAGCAGTGACTGG 745
Query 613 AGCATTGCAACTACTCGAAGGATAGTGATGCAAGTTGATCCTGAGCTTTCTAGGACAATT 672
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 AGCATTGCAACCACTCGAAGGATAGTGATGCAAGTTGATCCTGAGCTTTCTAGGACAATT 805
Query 673 GTTGTTTCTACAAAGCTTGACACCAAAATCCCTCAATTCTCATGTTCATCTGACGTGGAA 732
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 806 GTTGTTTCTACAAAGCTTGACACTAAAATCCCTCAATTCTCATGTTCATCTGACGTGGAA 865
Query 733 GTCTTCCTCTCACCTCCTGCAAGCGCACTTGACAGCTCCTTATTGGGCGATTCTCCTTTT 792
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 GTCTTTCTCTCACCTCCTGCAAGCGCACTTGACAGCTCCTTATTGGGCGATTCTCCTTTT 925
Query 793 TTCACGTCTGTGCCTTCTGGAAGAGTTGGTTATGGACAGGATTCAGTATATAAGTCTAAT 852
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 926 TTCACGTCTGTGCCTTCTGGAAGAGTTGGCTATGGACAGGATTCAGTGTATAAGTCTAAT 985
Query 853 GACGAGTTCAAACAGGCTGTGTCACTTAGAGAAATGGAAGACATTGCATCTTTAGAGAAG 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 GACGAGTTCAAACAGGCTGTGTCACTTAGAGAAATGGAAGACATTGCATCTTTAGAGAAG 1045
Query 913 AAGTTGGGCCGTTTGCTGACAAAACAGGAAAAGAGTAGGATTGGCATCAGTAAACTGAGG 972
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1046 AAGTTGGGCCGTTTACTGACAAAACAGGAAAAGAGTAGGATTGGCATCAGTAAACTGAGG 1105
Query 973 TTGTTTCTGGAAGAACTACTCTGGAAAAGGTACAAAGAGAGTGTTCCATTGATCATTCCA 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 TTGTTTCTGGAAGAACTACTCTGGAAAAGGTACAAAGAGAGTGTTCCATTGATCATTCCA 1165
Query 1033 CTGTTAGGAAAAGAGTACCGCAGTACAGTCGGAAAGCTGGATACCGTTAGCAAGGAACTT 1092
||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1166 CTGTTAGGAAAGGAGTACCGCAGTACAGTCAGAAAGCTGGATACCGTGAGCAAGGAACTT 1225
Query 1093 AGCTCTTTAGATGAAGCAAAACTCAAAGAGAGAGGCAGGACTTTCCATGATCTCTTCTTA 1152
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 AGCTCTTTGGATGAAGCAAAACTCAAAGAGAGAGGCAGGACTTTCCATGATCTCTTCTTA 1285
Query 1153 ACCAAGTTATCGCTGTTATTGAAAGGAACCGTTGTGGCCCCTCCTGATAAATTTGGTGAA 1212
||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1286 ACCAAGTTATCGCTGTTATTGAAGGGAACAGTTGTGGCCCCTCCAGATAAATTTGGTGAG 1345
Query 1213 ACATTGCAAGATGAAAGGGCACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTC 1272
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 ACACTGCAAGATGAAAGGACACAAGGAGGAGCATTTGTTGGTACTGATGGTCTCCAGTTT 1405
Query 1273 CCACATAAGCTAATACCAAATGCAGGGATGCGTCTTTATGGGGGTGCGCAGTATCACCGT 1332
|||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1406 TCACATAAGCTAATACCGAATGCAGGGATGCGTCTCTATGGGGGTGCACAATATCACCGT 1465
Query 1333 GCCATGGCCGAGTTTCGTTTTCTAGTTGGTGCTATCAAATGTCCCCCAATAAC-ACGGGA 1391
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1466 GCCATGGCTGAGTTTCGTTTTCTAGTTGGTGCTATCAAATGTCCCCCAATAACGA-GGGA 1524
Query 1392 GGAAATTGTAAATGCATGTGGAGTTGAAGATATTCATGATGGAACAAACTATTCCAGAAC 1451
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1525 GGAAATTGTAAATGCATGTGGAGTTGAGGATATTCATGATGGAACAAACTATTCCAGAAC 1584
Query 1452 AGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAAACGTTTGAACCTTTCCTTCATCAGTT 1511
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1585 AGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAGTT 1644
Query 1512 GGGGGCGAGGCTTCTACACATTCTCAAGAGATTGCTTCCAATTTCTGTATATCTTCTTCA 1571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1645 AGGGGCGAGGCTTCTACACATTCTCAAGAGATTGCTTCCAATTTCTGTATATCTTCTTCA 1704
Query 1572 GAAAGAAGGTGAATACTTAAGTGGGCATGAGGTGTTTCTCAAGCGGGTTGCTTCAGCTTT 1631
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1705 GAAAGAAGGTGAATATTTAAGTGGGCATGAGGTGTTTCTCAAGCGGGTTGCTTCAGCATT 1764
Query 1632 CAACAGTTTTGTGGAGTCCACAGAAAAATCATGTCGTGACAAATGTATGGAGGACTTAGC 1691
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1765 CAACAGTTTTGTGGAGTCCACAGAAAAATCATGTCGTGACAAATGTATGGAGGATTTAGC 1824
Query 1692 AAGCACGACTCGCTATGTTACATGGTCTCTTCACAACAAGAACCGAGCTGGTCTACGTCA 1751
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1825 AAGTACAACTCGCTATGTTACATGGTCTCTTCACAACAAGAACCGAGCTGGTCTACGTCA 1884
Query 1752 ATTCTTGGACTCATTTGGCGGAACAGAGCA-ACTTACTACATCAGGTAATGCCATAGGAT 1810
|||||||||||||||||| ||||||||||| | | || ||||||||||||||||||||||
Sbjct 1885 ATTCTTGGACTCATTTGGTGGAACAGAGCATAAT-ACGACATCAGGTAATGCCATAGGAT 1943
Query 1811 TTAGTCTTCCCCAAGATGCACCAGGTGGCACAACAGACACAAAGGT-AAGATCAGATGTA 1869
|||||||||||||||||||| |||||||||||||||||| ||| | |||||||||||||
Sbjct 1944 TTAGTCTTCCCCAAGATGCATTAGGTGGCACAACAGACACCAAG-TCAAGATCAGATGTA 2002
Query 1870 AAGCTAAGCCATCTCGCCTCAAACATCGATTCAGGTTCAAGTATTCAGACAACAGAAATG 1929
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2003 AAGCTAAGCCATCTCGCCTCAAACATCGATTCAGGTTCCAGTATTCAGACAACAGAAATG 2062
Query 1930 CGGTTGGCTGATCTTCTAGATAGCACGCTTTGGAACCGCAAGCTTGCTCCTTCCTCTGAG 1989
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2063 CGGTTGGCTGATCTTCTAGATAGCACACTTTGGAACCGCAAGCTTGCTCCTTCCTCTGAG 2122
Query 1990 AGAATTGTGTACGCATTAGTCCAACAGATATTCCAGGGCATACGAGAATACTTTCTCGCC 2049
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2123 AGAATTGTGTACGCATTGGTCCAACAGATATTCCAGGGCATACGAGAGTACTTTCTCGCC 2182
Query 2050 TCTGCTGAGTTAAAGTTCAACTGTTTTCTTCTAATGCCCATTGTTGATAAGTTACCTGCT 2109
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2183 TCTGCTGAGTTAAAGTTCAACTGTTTTCTTCTAATGCCCATCGTTGATAAGTTACCTGCT 2242
Query 2110 CTTCTCCGGGAGGAGTTGGAAAACGCATTTGAAGACGACCTCGATAGTATCTTCGACATC 2169
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2243 CTTCTCCGGGAAGAGTTGGAAAACGCATTTGAAGACGACCTCGATAGTATCTTCGACATC 2302
Query 2170 ACGAATCTCCGGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTGAGAAGG 2229
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2303 ACGAATCTCCGGCAATCACTTGATCAAAAGAAACGGAGCACAGAGATCGAGCTCAGAAGG 2362
Query 2230 ATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAACTCTCACGAATTT 2289
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2363 ATAAAGAGGATAAAAGAGAAATTCAGAGTGATGAATGAGAAGCTAAACTCTCATGAATTT 2422
Query 2290 GCTCAAAATCTAAAGGCTCCTTGGGTGCAGCA--G--TGAC--AAGTTCAATATTGCTTA 2343
|||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||
Sbjct 2423 GCTCAAAATCTAAAGGCTCCTTCGGTGCAGCATTGAGTGACTCAAGTTCAATATTGCTTA 2482
Query 2344 AT-ATTATTAGGTTAAGAAACAATC 2367
|| || |||||||||||||||||||
Sbjct 2483 ATTAT-ATTAGGTTAAGAAACAATC 2506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122206673148
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5