BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479492
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor... 2362 0.0
AT3G09375.1 | Symbols: | pseudogene, putative eukaryotic trans... 1086 0.0
> AT3G19760.1 | Symbols: EIF4A-III | eukaryotic initiation factor
4A-III | chr3:6863713-6866593 FORWARD LENGTH=1655
Length=1655
Score = 2362 bits (1279), Expect = 0.0
Identities = 1458/1542 (95%), Gaps = 21/1542 (1%)
Strand=Plus/Plus
Query 1 AAGCATTTGGGGAAAATCGATTGAAAACCCTAGGAGAGA-GAAAACAAAAAATCTAGACG 59
|||||||||||| ||||| || ||||||||||||||||| ||||| |||||||||||||
Sbjct 12 AAGCATTTGGGGGAAATCAATCGAAAACCCTAGGAGAGATAAAAAC-AAAAATCTAGACG 70
Query 60 GAGACTAATGGCGACAGCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGTGGACCTAT 119
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 71 GAGATTTATGGCGACAGCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGTGGAGCTAT 130
Query 120 GGATGACGATAAGCTGGTGTTCGAGACGACGGAAGGGATCGAGCCCATCACTAGCTTCAA 179
||||||||||||| |||| |||||||| || || || || ||||||||||| ||||||||
Sbjct 131 GGATGACGATAAGTTGGTCTTCGAGACTACCGATGGAATTGAGCCCATCACGAGCTTCAA 190
Query 180 TGATATGGGGATAAAGGAAGATGTGCTTCGCGGTGTTTACGAGTATGGATTCGAGAAGCC 239
||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 191 TGATATGGGCATTAAGGAAGATGTGCTTCGCGGTGTCTACGAATATGGATTCGAGAAGCC 250
Query 240 TTCCGCGATTCAGCAGAGGGCTGTGATGCCGATTCTTCAAGGACGCGATGTTATTGCTCA 299
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 251 TTCCGCGATTCAGCAGAGGGCTGTTATGCCGATTCTTCAAGGACGTGATGTTATTGCTCA 310
Query 300 AGCTCAGTCTGGTACCGGGAAGACATCTATGATTGCTCTCTCCGTTTGCCAAGTTGTTGA 359
||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 311 AGCTCAGTCCGGTACCGGGAAGACATCTATGATTGCTCTCTCCGTTTGTCAAGTCGTTGA 370
Query 360 TACTTCTTCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TACTTCTTCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACA 430
Query 420 AACAGAGAAGACGATACAAGCTATTGGATTACACGCCAATATTCAGGCACATGCTTGCAT 479
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 431 AACAGAGAAGACGATACAAGCTATTGGATTACATGCCAATATTCAGGCACATGCTTGCAT 490
Query 480 CGGTGGGAAGAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTC 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CGGTGGGAATAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTC 550
Query 540 TGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTAT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTAT 610
Query 600 TAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAAGACCAAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 611 TAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAGGACCAGAT 670
Query 660 CTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCCTGGTTTCTGCAACCCT 719
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 671 CTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCTTGGTTTCTGCAACTCT 730
Query 720 TCCTCACGAGATTTTGGAGATGACATCTAAGTTTATGACGGAGCCAGTGAAGATACTTGT 779
||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 731 TCCTCACGAGATTTTGGAGATGACATCCAAGTTTATGACAGAACCAGTGAAGATACTTGT 790
Query 780 GAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAATTTTTTGTTGCTGTTGAGAAAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 791 GAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAATTTTTTGTTGCTGTTGAGAAGGA 850
Query 840 GGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACACTTACTATCACTCAAGCTGT 899
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 851 AGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACGCTTACTATCACTCAAGCTGT 910
Query 900 TATCTTCTGCAATACAAAACGAAAGGTGGATTATCTAAGTGAGAAAATGAGAAGTAACAA 959
||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 911 TATCTTCTGCAATACTAAACGAAAGGTGGATTATCTTAGTGAGAAAATGAGAAGTCACAA 970
Query 960 CTTCACTGTCTCATCAATGCACGGGGACATGCCTCAGAAGGAGAGAGACGAGATCATGAA 1019
||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 971 CTTCACTGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGACGCCATCATGAA 1030
Query 1020 TCAGTTCCGGTCAGGTGAAAGTCGTGTTTTGATCACAACTGATGTATGGGCACGTGGGAT 1079
| |||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1031 TGAGTTTCGGTCAGGTGATAGTCGTGTTTTGATAACAACAGATGTATGGGCACGTGGGAT 1090
Query 1080 TGATGTGCAGCAAGTTTCTCTTGTCATCAATTATGATCTCCCCAACAACCGTGAGCTGTA 1139
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1091 TGATGTGCAACAAGTTTCTCTTGTTATCAATTATGATCTCCCCAACAACCGTGAGCTCTA 1150
Query 1140 CATCCATCGTATTGGACGGTCTGGTCGATTTGGGCGTAAGGGTGTTGCAATCAACTTTGT 1199
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1151 CATCCATCGTATTGGGCGGTCTGGTCGATTCGGGCGTAAGGGTGTTGCAATCAACTTTGT 1210
Query 1200 TAAAAGCGACGATATCAAGATCCTTC-GAGACATTGAGCAGTACTACAGTACCCAGATTG 1258
|||||||||||| |||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1211 TAAAAGCGACGACATCAAGATTCT-CAGAGACATTGAGCAGTACTACAGTACCCAGATTG 1269
Query 1259 ATGAGATGCCAATGAATGTAGCTGATCTTATCTAAAAGAAGAGCTTGTCTGAGGTTTTT- 1317
||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 1270 ATGAGATGCCAATGAATGTAGCTGATCTTATCTAAAAGA-G--CTTGTCTGAGATTTTTG 1326
Query 1318 TGCTTTCAGCGGG-AAGTGTCTGGATGAGAAGAAGTATTGTTGAGAGCTTCTGTCAAATT 1376
||||||||||||| |||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 1327 TGCTTTCAGCGGGGAAGTGTCTGGATGA-AA-AAGTATTGTTGAGCGCTTCTGTCAAATT 1384
Query 1377 ATTGCACTATCTTAT-GGTGTGGTTCCTTTTGATGTTTCTGTGGGCTCTTTTGAACAAAC 1435
|||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1385 ATTGCACTATCTTAACGGTGTATTTCCTTT-GATGTTTCTGTGGGCTCTTTTGAACAAAC 1443
Query 1436 TTAAAACTCGCGTGTGGTAAAT-TTATAATGACTTAAGAAGCGATTTAGGATTAGGGTTT 1494
||||| |||||||||||||||| || ||||||||| |||||||||||||| |||||||||
Sbjct 1444 TTAAA-CTCGCGTGTGGTAAATGTT-TAATGACTTGAGAAGCGATTTAGGTTTAGGGTTT 1501
Query 1495 GGACC-TTCTGGttttt--tttCCCTCGTAATTGATTTTGGG 1533
||||| || |||||||| ||||| |||||||||||| ||||
Sbjct 1502 GGACCGTT-TGGTTTTTCGTTTCC-TCGTAATTGATTCTGGG 1541
> AT3G09375.1 | Symbols: | pseudogene, putative eukaryotic translation
initiation factor 4A-3 (eIF-4A-3/eIF4A-3), strong similarity
to SP|P41380|IF43_NICPL Eukaryotic initiation factor
4A-3 (eIF-4A-3) (eIF4A-3) {Nicotiana plumbaginifolia}; blastp
match of 84% identity and 4.1e-163 P-value to GP|13957631|gb|AAK50586.1|AC084404_11|AC084404
putative translation initiation
factor {Oryza sativa} | chr3:2882492-2883862 REVERSE
LENGTH=1371
Length=1371
Score = 1086 bits (588), Expect = 0.0
Identities = 751/830 (90%), Gaps = 10/830 (1%)
Strand=Plus/Plus
Query 469 CATGCTTGCATCGGTGGGAAGAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTT 528
||||| ||||| ||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 547 CATGCATGCATTGGTGGGAAGAGCCTCGGAGAAGACATAAGGAAGCTGGAGCATGGTGTC 606
Query 529 CATGTTGTGTCTGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGT 588
||||||||||| || |||||||||||||||| |||||||||||||||||||||||| |
Sbjct 607 CATGTTGTGTCCGGAACACCTGGTCGTGTCTATGACATGATAAAGAGGAGAAGTCTAGGC 666
Query 589 ACCAGAGCTATTAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTC 648
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 667 ACCAGAGCTATTAACCTTTTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGATTC 726
Query 649 AAAGACCAAATCTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCCTGGTT 708
|| || |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||
Sbjct 727 AAGGAACAAATCTATGATGTTTACAGATATCTTCCACCTGATATTCAGGTTTGCTTGGTT 786
Query 709 TCTGCAACCCTTCCTCACGAGATTTTGGAGATGAC-ATCTAAGTTTATGACGGAGCCAGT 767
|||||||| || ||||||||||||||||||||||| | | |||||||||||||| || ||
Sbjct 787 TCTGCAACTCTACCTCACGAGATTTTGGAGATGACAAGC-AAGTTTATGACGGATCCGGT 845
Query 768 GAAGATACTTGTGAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAA-TTTTTTGTTG 826
|||||||||||||||||||||||||||||||||||| ||||| ||| || |||||| ||
Sbjct 846 GAAGATACTTGTGAAGCGTGATGAGTTGACTCTTGAGGGAATTAAA-AACTTTTTTATTT 904
Query 827 CTGTTGAGAAAGAGGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACACTTACT- 885
|||| ||||||||||||||||||||||| ||| | ||||||||||| |||||||||| |
Sbjct 905 CTGTAGAGAAAGAGGAGTGGAAATTTGAGACAATATGTGATCTTTACGACACACTTA-TC 963
Query 886 ATCACTCAAGCTGTTATCTTCTGCAATACAAAACGAAAGGTGGATTATCTAAGTGAGAAA 945
|||||| ||||||||||||||||||| ||||||||||| ||||| ||| | |||||||||
Sbjct 964 ATCACTAAAGCTGTTATCTTCTGCAACACAAAACGAAAAGTGGACTATATTAGTGAGAAA 1023
Query 946 ATGAGAAGTAACAACTTCACTGTCTCATCAATGCACGGGGACATGCCTCAGAAGGAGAGA 1005
||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1024 ATGAGGAGCAGCAACTTCACTGTCTCATCAATGCATGGGGACATGCCTCAGAAGGAGAGA 1083
Query 1006 GACGAGATCATGAATCAGTTCCGGTCAGGTGAAAGTCGTGTTTTGATCACAACTGATGTA 1065
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||| ||| |
Sbjct 1084 GACGAGATCATGAATCAGTTTCGGACAGGTGAAAGTCGCGTTTTGATCACAACAGATATG 1143
Query 1066 TGGGCACGTGGGATTGATGTGCAGCAAGTTTCTCTTGTCATCAATTATGATCTCCCCAAC 1125
| |||||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 1144 TTTGCACGTGGGATTGATGTGGATCAAGTTTCTCTTGTCATCAATTATGATCTCCCTAAC 1203
Query 1126 AACCGTGAGCTGTACATCCATCGTATTGGACGGTCTGGTCGATTTGGG-CGTAAGGGTGT 1184
||||||||||| ||||| ||||||||||||||||||||||| ||| || |||||||||||
Sbjct 1204 AACCGTGAGCTCTACATTCATCGTATTGGACGGTCTGGTCG-TTTCGGACGTAAGGGTGT 1262
Query 1185 TGCAATCAACTTTGTTAAAAGCGACGATATCAAGATCCTTCGAGACATTGAGCAGTACTA 1244
|||||||||||||||||||| |||||| |||||||| || || |||||||||||||||||
Sbjct 1263 TGCAATCAACTTTGTTAAAATCGACGAGATCAAGATTCTCCGGGACATTGAGCAGTACTA 1322
Query 1245 CAGTACCCAGATTGATGAGATGCCAATGAATGTAGCTGATCTT-ATCTAA 1293
|||||| |||||||| ||| |||||| |||| |||||||| || ||||||
Sbjct 1323 CAGTACTCAGATTGACGAGTTGCCAAAGAATATAGCTGAT-TTGATCTAA 1371
Score = 97.1 bits (52), Expect = 4e-19
Identities = 83/97 (86%), Gaps = 5/97 (5%)
Strand=Plus/Plus
Query 353 TTGTTGATACTTCTTCTAG-AGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTG 411
|||||| || |||| | | || |||||||||||||||||||||||||||||||||||||
Sbjct 466 TTGTTGGTATTTCTGATTGCAG-GGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTG 524
Query 412 GCTA-CACAAACAGAGAAGACG-ATACAAGCTATTGG 446
||| |||||||||| |||||| || || || |||||
Sbjct 525 GCTTTCACAAACAGATAAGACGCATGCATGC-ATTGG 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5