BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479493
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19770.1 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting ... 2977 0.0
AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9... 917 0.0
> AT3G19770.1 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting
protein 9 (VPS9) domain | chr3:6866806-6869475 FORWARD LENGTH=2034
Length=2034
Score = 2977 bits (1612), Expect = 0.0
Identities = 1864/1984 (94%), Gaps = 23/1984 (1%)
Strand=Plus/Plus
Query 45 ACTCATTCTCACTGGTCAATAGACGGAGATAAACGGGTCATCGGCGATGGAGAACACGGA 104
|||| ||||||||||||||| | ||||||||| ||||| ||||||||||||||| |||||
Sbjct 66 ACTC-TTCTCACTGGTCAATCGTCGGAGATAATCGGGTGATCGGCGATGGAGAATACGGA 124
Query 105 CGTCTTCTTGGGGCTGCATGATTTCCTGGAACGGATGCGCAAACCCTCCGCCGGCGATTT 164
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 125 CGTCTTCTTGGGGCTGCATGATTTCCTGGAGCGGATGCGCAAACCCTCCGCCGGCGATTT 184
Query 165 CGTCAAATCCATTAAAAGTTTCATTGTTTCATTCTCGAACAATGCACCAGACCCGGAAAA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 CGTCAAATCCATTAAAAGTTTCATTGTTTCATTCTCGAACAATGCACCAGACCCGGAAAA 244
Query 225 AGATTGTGCTACTG-TTCAGGAGTTCTTTTCTAAGATGGAGGCTGCTTTCAGGGCTCATC 283
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGATTGTGCTA-TGGTTCAGGAGTTCTTTTCTAAGATGGAGGCTGCTTTCAGGGCTCATC 303
Query 284 CACTTTGGTCTGGTTGTTCTGAGGAGGAATTGGACAGTGCGGGAGATGGCCTAGAGAAGT 343
|||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 304 CACTTTGGTCTGGTTGTTCTGAGGAGGAATTGGATAGTGCTGGAGATGGCCTGGAGAAGT 363
Query 344 ATGTTATGACAAAGCTATTTACCCGGGTATTTGCTTCAAACACTGAGGAGGTTATAGCTG 403
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 364 ATGTTATGACAAAGCTATTTACTCGGGTGTTTGCTTCAAACACTGAGGAGGTTATAGCTG 423
Query 404 ATGAGAAACTCTTTCAGAAGATGTCACTGGTTCAACAATTCATTTCTCCTGAGAATTTGG 463
||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 424 ATGAGAAGCTATTTCAGAAGATGTCATTGGTTCAACAATTCATTTCTCCCGAGAATTTGG 483
Query 464 ATATACAACCAACTTTTCAAAATGAATCATCATGGCTGCTAGCTCAAAAAGAGCTCCAGA 523
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 484 ATATACAACCAACTTTTCAAAATGAATCGTCATGGCTGCTAGCTCAAAAAGAGCTCCAGA 543
Query 524 AGATAAACATGTACAAAGCTCCTCGTGATAAGCTTGTGTGTATCCTTAACTGTTGCAAAG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AGATAAACATGTACAAAGCTCCTCGTGATAAGCTTGTGTGTATCCTTAACTGTTGCAAAG 603
Query 584 TGATAAATAACTTACTGCTAAATGCTTCAATTGCTTCAAACGAGAATGCACCTGGAGCAG 643
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TGATTAATAACTTACTGCTAAATGCTTCAATTGCTTCAAACGAGAATGCACCTGGAGCAG 663
Query 644 ACGAATTTCTTCCTGTTTTGATATATGTTACAATAAAGGCTAACCCTCCACAACTTCACT 703
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 664 ACGAATTTCTTCCTGTTTTGATATATGTAACAATAAAGGCTAACCCTCCACAACTTCACT 723
Query 704 CAAACTTGTTGTATATACAAAGATATAGGCGTGAGTCTAAACTTGTTGGTGAAGCTGCGT 763
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 724 CAAACTTGTTGTATATACAAAGGTATAGGCGTGAATCTAAACTTGTTGGTGAAGCTGCGT 783
Query 764 ACTTCTTCACAAACATACTCTCTGCAGAGTCTTTCATCTCTAATATTGATGCAAAATCTC 823
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 784 ACTTCTTCACAAACATACTCTCTGCAGAGTCTTTCATCTCAAATATTGATGCAAAATCTA 843
Query 824 TTTCATTGGATGAAGCTGAGTTTGAAAAGAACATGGAATCTGCACGAGCACGAATTTCTG 883
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 844 TTTCACTGGATGAAGCTGAGTTTGAAAAGAACATGGAATCTGCACGGGCACGAATTTCTG 903
Query 884 GTTTGGGCAGCCAGTCTTATCAAACTGGTCATGGCTCTGCATCACCCCCTCGCGATGAGT 943
|||||| ||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 904 GTTTGGACAGCCAGACTTATCAAACTGGTCATGGCTCTGCACCACCCCCTCGTGATGAGT 963
Query 944 CCACTCTTCAGAAAACTCAAAGTCTGAATCCCAAGAGGGAAAACACTCTTTTCCAATCAA 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 CCACTCTTCAGAAAACTCAAAGTCTGAATCCCAAGAGGGAAAACACTCTTTTCCAATCAA 1023
Query 1004 AATCGTCTGATAGTCTTTCTGGGACCAACGAAATACTGAATATAAACAGTGAAACACCAA 1063
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1024 AATCGTCTGATAGTCTTTCTGGGACCAACGAATTACTGAATATAAACAGTGAAACACCAA 1083
Query 1064 TGAAGAAAGCTGAATCCATTTCAGATTTGGAAAATAAGGGTGCAACGCTTCTGAAGGATA 1123
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1084 TGAAGAAAGCTGAATCCATTTCAGATTTGGAAAATAAGGGTGCGACGCTTCTGAAGGATA 1143
Query 1124 CCGAGCCAAGCAAAGTCTTTCAAGAATATCCTTACTTATTTGCCAGTGCTGGTGATCTGA 1183
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1144 CCGAGCCAAGCAAAGTCTTTCAAGAATATCCTTACATATTTGCCAGTGCTGGTGATTTGA 1203
Query 1184 GGATAGGAGATGTTGAGGGCTTGTTAAATAATTATAAACAGCTCGTTTTCAAATATGTGT 1243
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1204 GGATAGGAGATGTTGAAGGCTTGTTAAATAGTTATAAACAGCTCGTTTTCAAATATGTGT 1263
Query 1244 GCCTGACCAAAGGATTGGGTGATGCAACATCTTTAGCTCCATCCAGTTCACCCTTGCAAG 1303
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1264 GCCTTACCAAAGGATTGGGTGATGGAACATCTTTAGCTCCATCCAGTTCACCCTTGCAAG 1323
Query 1304 CGTTGTCCGGTTTTGATACGTCTAAGGAATCTGAGGATCATACAACATCGTCTTCAGATG 1363
||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1324 CGTCGTCCGGTTTTAATACGTCTAAGGAATCTGAGGATCATAGAAGATCGTCTTCAGATG 1383
Query 1364 TGCAAATGACAAGGGAAACTGACAGCAGTGTTGATGATTTGATCCGAGCTCTACAAGGTG 1423
| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1384 TACAAATGACAAAGGAAACTGACAGGAGTGTTGATGATTTGATCCGAGCTCTACATGGTG 1443
Query 1424 AAGGGGAAGATGTTAATAATTTGTCAGATGTAAAACATGAAGAATATGGCGCAATGTTGG 1483
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1444 AAGGGGAAGATGTTAACAATCTGTCAGATGTAAAACATGAAGAATATGGCGCAATGTTGG 1503
Query 1484 TAGAGCGAAAGGATGAAGAACGTGATCCCAAGGTGCTAGGAGAAGCAGATGCCAAAGATA 1543
||||| |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 1504 TAGAGGGAAAGGATGAAGAACGTGATTCCAAGGTGCAAGGAGAAGTAGATGCCAAAGATA 1563
Query 1544 CTGATTTGATTAAGCAAATTCCTAAGAGAGAAAGTGACAATTCTAGTTCCCGACCTGCAG 1603
||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1564 TTGAATTGATGAAGCAAATTCCTAAGAGAGAAGGTGACAATTCTAGTTCCCGACCTGCAG 1623
Query 1604 AAGATGAAGATGTTGGTTCCAAACACCCAGTTGCGGAAGCTTTTGAGTGAGC-AGAATGA 1662
||||||||||||||||||||||||| |||||| ||||||||| ||||||||| | |||||
Sbjct 1624 AAGATGAAGATGTTGGTTCCAAACAGCCAGTTACGGAAGCTTCTGAGTGAGCCA-AATGA 1682
Query 1663 CTCGTCAAGGTGATGAGAGTCTCTTGAATGGGATCAGTTATTTGTTGAgggggggAAGCA 1722
| | || |||||||||||||||||| || |||||| ||||| || | ||||||||||
Sbjct 1683 CCCATCTTGGTGATGAGAGTCTCTTGTATCGGATCAATTATTCATTTAATGGGGGAAGCA 1742
Query 1723 GAGGTCAGAG-CATAGGTAAAATGTCATCCATTCGTTTCCTGCAGCTGTGTGTTTTGAGG 1781
|||||| || ||||| ||| |||||||| ||||||||| || || | || ||||||| |
Sbjct 1743 AAGGTCA-AGTCATAGTTAAGATGTCATCTATTCGTTTCTTGGAGTTATGAGTTTTGAAG 1801
Query 1782 ATGACTGGAGAGTTGTATGAGGTG-AAGGCTATCTGTATCTTTAGTCTCTTGGGAAACAG 1840
|||||||||||| ||||||| | ||| ||||||| |||| || || ||||| ||| ||
Sbjct 1802 ATGACTGGAGAGCCGTATGAGACGGAAG-CTATCTGCATCTGTATTCCCTTGGAAAAGAG 1860
Query 1841 GAGCAGTCAAATGGTAACTCTACTTTCTTTAGTTGTGtttttctttttttttGCAGTCCA 1900
| ||||||||||||||| | ||||||||| | |||||||| |||||||| || ||
Sbjct 1861 GGGCAGTCAAATGGTAAAT-TACTTTCTTCAATTGTGTTT--CTTTTTTT--GC--TC-- 1911
Query 1901 CTCTTTGTTTCTCTA-TGATATGATTTTGGAGGGGCTCCTCAACATTTATCAATCCATAT 1959
| || ||||||| | |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1912 -T-TT-GTTTCTC-AGTGATATGATTTTGGAGGGGCTCGTCAACATTTGTCAATCCATAT 1967
Query 1960 GTAACTCTTACATCTGCTATTGCGTATATACTATAAGGATATATTCAGAATAATATTTGC 2019
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1968 GTAACTCTTACATCTGCTATTGCGTATATACAATAAGGATATAATCAGAATAATATTTGC 2027
Query 2020 CAAG 2023
||||
Sbjct 2028 CAAG 2031
> AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9)
domain | chr5:2888655-2892016 REVERSE LENGTH=2491
Length=2491
Score = 917 bits (496), Expect = 0.0
Identities = 735/848 (87%), Gaps = 25/848 (3%)
Strand=Plus/Plus
Query 91 ATGGAGAACACGGACGTCTTCTTGGGGCTGCATGATTTCCTGGAACGGATGCGCAAACCC 150
||||||||||| |||||| ||| ||| |||||| |||| || | | | | ||||||
Sbjct 1 ATGGAGAACACAGACGTCGTCTCGGGTCTGCATAATTT-CTTG-A--G-T----AAACCC 51
Query 151 TCCGCCGGCGATTTCGTCAAATCCATTAAAAGTTTCATTGTTTC-ATTCTCGAACAATGC 209
|||||| |||||| ||||||| || ||||||||||||||||| | ||| ||||| |||
Sbjct 52 TCCGCCAAAGATTTCATCAAATCAATCAAAAGTTTCATTGTTTCGA-TCTTGAACACTGC 110
Query 210 ACCAGACCCGGAAAAAGATTGTGCTACTGTTCAGGAGTTCTTTT-CTAAGATGGAGGCTG 268
||||||||| ||||||||||||| | | |||||||| ||||||| | ||||||||| |||
Sbjct 111 ACCAGACCCTGAAAAAGATTGTGATGCAGTTCAGGACTTCTTTTAC-AAGATGGAGTCTG 169
Query 269 CTTTCAGGGCTCATCCACTTTGGTCTGGTTGTTCTGAGGAGGAATTGGACAGTGCGGGAG 328
|||||||||||||||||||||||||||||||||| || || || || |||| ||||||||
Sbjct 170 CTTTCAGGGCTCATCCACTTTGGTCTGGTTGTTCCGATGATGAGTTAGACAATGCGGGAG 229
Query 329 ATGGCCTAGAGAAGTATGTTATGACAAAGCTATTTACCCGGGTATTTGCTTCAAACACTG 388
||||||| ||||||||||| ||||||||| ||||| ||||||| ||||| |||||||| |
Sbjct 230 ATGGCCTGGAGAAGTATGTCATGACAAAGTTATTTCCCCGGGTTTTTGCATCAAACACCG 289
Query 389 AGGAGGTTATAGCTGATGAGAAACTCTTTCAGAAGATGTCAC-TGGTTCAACAATTCATT 447
|||| |||||| | ||||||||||||||||||||||| || | |||||||||| |||||
Sbjct 290 AGGATGTTATATCCGATGAGAAACTCTTTCAGAAGATTTC-CTTGGTTCAACAGTTCATA 348
Query 448 TCTCCTGAGAATTTGGATATACAACCAACTTTTCAAAATGAATCATCATGGCTGCTAGCT 507
|||||||| || |||||||||||||||||||||||||| || |||| ||||| ||||||
Sbjct 349 TCTCCTGAAAACTTGGATATACAACCAACTTTTCAAAACCAAACATCTTGGCTTCTAGCT 408
Query 508 CAAAAAGAGCTCCAGAAGATAAACATGTACAAAGCTCCTCGTGATAAGCTTGTGTGTATC 567
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct 409 CAAAAAGAGCTCCAGAAGATAAATATGTACAATGCTCCTCGTGATAAGCTTATGTGTATC 468
Query 568 CTTAACTGTTGCAAAGTGATAAATAACTTACTGCTAAATGCTTCAATTGCTTCAAACGAG 627
|||| || |||||||| || ||||||||||| |||||||||||||||||||||||| ||
Sbjct 469 CTTAGGTGCTGCAAAGTCATTAATAACTTACTTCTAAATGCTTCAATTGCTTCAAACCAG 528
Query 628 AATGCACCTGGAGCAGACGAATTTCTTCCTGTTTTGATATATGTTACAATAAAGGCTAAC 687
|||| ||||||||| ||| |||||||||||||| | ||||||||||| || |||||||||
Sbjct 529 AATGAACCTGGAGCTGACCAATTTCTTCCTGTTCTCATATATGTTACCATTAAGGCTAAC 588
Query 688 CCTCCACAACTTCACTCAAACTTGTTGTATATACAAAGATATAGGCGTGAGTCTAAACTT 747
||||| || |||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 589 CCTCCCCAGTTTCACTCAAACTTGTTGTATATACAAAGATATAGGCGTCAATCTAAACTG 648
Query 748 GTTGGTGAAGCTG-CGTACTTCTTCACAAACATACTCTCTGCAGAGTCTTTCATCTCTAA 806
||||| ||||||| | ||||| ||||| |||||||||||||||||||| |||||||| ||
Sbjct 649 GTTGGCGAAGCTGGC-TACTTATTCACCAACATACTCTCTGCAGAGTCATTCATCTCAAA 707
Query 807 TATTGATGCAAAATCTCTTTC-ATTGGATGAAGCTGAGTTTGAAAAGAACATGGAATCTG 865
||||||||||||||| || || || |||||||||||| ||||||| || ||| ||||||
Sbjct 708 TATTGATGCAAAATCCCTCTCCAT-GGATGAAGCTGACTTTGAAACTAAAATGAAATCTG 766
Query 866 CACGA-GCACGAATTTCTGGTTTGGGCAGCCAGTCTTATCAAACTGG-TCATGGCT-CTG 922
||| | ||||| |||||||| ||| ||||||||||||||||| || ||| || | |||
Sbjct 767 CAC-ATGCACGTCTTTCTGGTCCGGGAAGCCAGTCTTATCAAAC-GGATCACGG-TGCTG 823
Query 923 CATCACCC 930
||| ||||
Sbjct 824 CATTACCC 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5