BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479495
Length=3162
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19780.1 | Symbols: | LOCATED IN: endomembrane system; CONT... 3537 0.0
> AT3G19780.1 | Symbols: | LOCATED IN: endomembrane system; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF179
(InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335),
Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis
thaliana protein match is: Protein of unknown function (DUF179)
(TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins
in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi
- 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink). | chr3:6870173-6874850 FORWARD LENGTH=3418
Length=3418
Score = 3537 bits (1915), Expect = 0.0
Identities = 2157/2273 (95%), Gaps = 19/2273 (1%)
Strand=Plus/Plus
Query 1 GAGAGCGAGCGGTTTTCCGATGAAGACGCCCACGCTCCTCCTTCTCTTCC--TC-T--CC 55
|||||||||| ||||||||||||| ||||| |||||||||| || ||||| || | |
Sbjct 47 GAGAGCGAGCTGTTTTCCGATGAAAACGCCGACGCTCCTCC-TC-CTTCCATTCTTGGTC 104
Query 56 TTCTTATCCGTTATTCTTCCATCGTCAAG-TGGGCAAGGCGAATGGGAGATCCTCACGGA 114
||| ||||| | |||||||| | ||||| | | || ||||||||||| |||||||||||
Sbjct 105 TTCGTATCCATAATTCTTCC--C-TCAAGCT-GCCATGGCGAATGGGAAATCCTCACGGA 160
Query 115 GCAAAACTTCTCTTCTCAGATCCGTCTCCACCCTCATGTCCTCCTCTTTGTCACCACTCC 174
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 161 GCAAAACTTCTCTTCTCAGATCCGTCTCCACCCTCACGTCCTCCTCTTTGTCACCACTCC 220
Query 175 ATGGTGTGGTGAGTCCAGATCGCTTAAGCATGAAATTGCTCAGATGGTTCAAAGTAGGGA 234
||||||||||||||||||||| |||||| |||||||| ||||||||||||| || || ||
Sbjct 221 ATGGTGTGGTGAGTCCAGATCTCTTAAGTATGAAATTACTCAGATGGTTCAGAGAAGAGA 280
Query 235 GGAATTTGGCTTGTTGAAGTTAATGGTTGTATACAGAAACTCAGAAAAGGTGTTAGCACA 294
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 AGAGTTTGGCTTGTTGAAGTTAATGGTTGTATACAGAAACTCAGAAAAGGTGTTAGCACA 340
Query 295 AGCCATTGGTGCTGC---CAACGGGATAACAATTTTGTACTATCACAAAAGTGTGCCTTA 351
||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 341 AGCCATTGGTGCTGCTGTCAATGGGATAACAATTTTGTACTATCACAATAGTGTGCCTTA 400
Query 352 CAACTATCTAGGGAAACTCCGAGCCTCGAATATATTGTCCTCTATACATCCTTATCTGAC 411
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 401 CAACTATCTAGGGAAACTCCGAGCCTCGAATATATTGTCATCTATTCATCCTTATCTGAC 460
Query 412 ATCTACTCCTGAAGAACTCCCTCTCAAACATTTGAAGTCTCCAAAGAGTTTGAAAGATTT 471
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 ATCTACGCCTGAAGAACTCCCTCTCAAACATTTGAAGTCTCCAAAGAGTTTGAAAGATTT 520
Query 472 CCTTCAATCATCTGACAAGGCTTTACTTCTGTTCGAATTTTGCGGATGGACTACTACGCT 531
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 521 CCTTCAATCATCTGATAAGGCTTTACTTCTGTTCGAATTTTGCGGATGGACAACTACACT 580
Query 532 GCTATCTGAGCTGAAGAAAAATGTTACTGAAGATAACCTTTGGCAGGAATGGAACAATAT 591
| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 581 GATGTCTGAGCTGAAGAAAAATGTTACTCAAGATAACCTTTGGCAGGAATGGAACAATAT 640
Query 592 GTGTGGACTCCAAAGTGGATTTGGTAAAGTTCCTTGGCTTGAGGATTTTAGCTATGCCAA 651
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 641 GTGTGGACTCCAAAGTGGATTTGGTAAAGTTCCCTGGCTTGAGGATTTTAGCTATGCGAA 700
Query 652 TGATACTGCTGCTTTGCAGGAACATGGCAGGGTAAATCTGGGTTTTGGACAGACATGTAA 711
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 701 TGATACTGCTGCTTTGCAGGAACATGGCAGGGTAAATCTGGGTCTTGGACAGACATGTAA 760
Query 712 CCATGAAGAGTTCAAGCAATTTAGTTCATTCCTCTCGAAATTGATTGCCACCACAAAAGA 771
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 761 CCATGAAGAGTTCAAGCGATTTAGTTCATTCCTCTTGAAATTGATTGCCACCACAAAAGA 820
Query 772 GTTTTCTCTGCCTCCTGAAAGGCAAAAATTTGGTCTGATCACAGAAGAATCATTGGCTTC 831
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GTTTTCTCTGCCTCCGGAAAGGCAAAAATTTGGTCTGATCACAGAAGAATCATTGGCTTC 880
Query 832 ATCATTTAATATTGGAAAATCTGATTCGTGGGCAGCGGTCCTTCAGCTAGCAGGATGTCT 891
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 881 ATCATTTAATTTTGGAAAATCTGATTCGTGGGCAGCGGTCCTTCAGCTGGCAGGATGTCC 940
Query 892 ACATTGTTCAAAGATTTTCAAGGCCGGGGACGACATTCAGAGATTTTTAAAGATGGAGAA 951
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 941 ACATTGTTCTAAGATTTTCAAGGCCGGGGATGACATTCAGAGATTTTTAAAGATGGAAAA 1000
Query 952 TCCGATAGTCACAGAGCTGGAGGACGACTGGCAGGACCATGAGTCATCTTTACCTGCAAG 1011
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1001 TCCGATAGTTACAGAGCTGGAGGACGACTGGCAGGACCATGAGTCATCTCTACCTGCAAG 1060
Query 1012 TAAACCCTCAGTTATTCTTTTTGTGGATAGATCAAGTGGGTCCTTGGAAGAGAGGAGAAG 1071
|||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1061 TAAACCGTCAGTTATTCTTTTTGTGGATAGATCAAGTGGGTCCTTGGAGGAGATGAGAAG 1120
Query 1072 GAGTATGAAAGCACTTGATACTTTCAGAGAGGTAGCTGCACAGCATAAATTGTCTGACAT 1131
|||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1121 GAGTATAAAAGCACTTGATACCTTCAGACAGGTAGCTGCACAGCATAAATTGTCTGACAT 1180
Query 1132 AAAACAA-TGGGAGAATGATATTAAGTATGAGAAATCCGTTAGCCAGGCTGATAAAAAAT 1190
|||| || |||||||||||||||| ||||||||| ||||||| || ||||| || |||
Sbjct 1181 AAAA-AAGTGGGAGAATGATATTATGTATGAGAACCCCGTTAGTCAAACTGATCAAGAAT 1239
Query 1191 CGGGGTCTGTGTCACTTCCAAAAACTGTCCAAAAGTTTAAGAAAATTAAGTTAGAGAATA 1250
||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1240 CGGGGTCCGTGCCACTTCCGAAAACTGTCCAAAAGTTTAAGAAAATTAAGTTCGAGAATA 1299
Query 1251 AGGTCTCTTTTATGATTTTGGATGGGGATAAACATGTAGCCCTAGATACTGTAGCGCCAG 1310
|||| |||||||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1300 AGGTTTCTTTTATGATTATGGATGGGGGTAAACATGTAGCCCTAGATACTATAGCGCCAG 1359
Query 1311 GTATGGAAGGCAGTTCCCTGCAGGAGATACTGACAAATCTTCTTCACAGAAGAAAAGAAA 1370
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1360 GTATGGAAGGCAGTTCCCTGCAGGAGATACTGAAAAATCTTCTTCACAGAAGAAAAGAAA 1419
Query 1371 GTAAATTGAGCTCGCTTGCTAAGGATGTTGGTTTCCGTCTGTTATCTGATGATGTGCACA 1430
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 GTAAATTGAGCTCAATTGCTAAGGATGTTGGTTTCCGTCTGTTATCTGATGATGTGCACA 1479
Query 1431 TAAAAGTGCTGGATGCGTTACCGTCACAAACAGAAGTTGTGTCTAGTCAAGATACAACTT 1490
||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1480 TAAAAGTTCTGGATGCGTTACCGTCACAAGCAGAAGTTGTGTCTGGTCAAGATACAACTT 1539
Query 1491 CATCTTCTGCAGAAGGTTCCAGTGAAATTTCTCTTCACCCTAAAGATGCAGATGTGCAGA 1550
||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct 1540 CATCTTCTGCAGAAGGTTCCAGTGAAATTTCACTTCACCCTACAGAAGCAGATGTGCAGA 1599
Query 1551 ACAGAGTCGGTATGAGTTCTGAAGAAAAAGATGAAATGAAATCCTCTGAAACTGAATCCT 1610
|||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1600 ACAGAGTCAGTATGAGTTCTGAAGCAAAAGATGAAATGAAATCCTCTGAAATTGAATCCT 1659
Query 1611 CCTCCCCTAGTGATGAAGAGCAGGTTACTACAAACAGGAGTGAACAATTAGTAATGGCAG 1670
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1660 CCTCCCCTAGTGATGAAGAGCAGGCTACTACAAACAGGAGTGAACAATTAGTAGTGGCAG 1719
Query 1671 AAACCGATAAGACTGAGGTTTATTTGaaaaaaaaTATTAATGGAGAGATCAAGGTATCGT 1730
||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||||
Sbjct 1720 AAACCGATAAGACTGAGGTTTATTTGAAAGACAATGTTAATGGAGAGATCAAGGTCTCGT 1779
Query 1731 TGCACTCAGAACCGAAGGAAGATCTAGTGCATAAATTCACGGGTTCATTTTTCTTCTCTG 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1780 TGCACTCAGAACCGAAGGAAGATCTAGTGCATAAATTCACGGGTTCATTTTTCTTCTCTG 1839
Query 1791 ATGCAAATTATGTATTACTTAGGGCTCTTACTGGTGATGTAAAGATTCCATCAGCAGTAA 1850
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1840 ATGCAAATTATGTTTTACTTAGGGCCCTTACTGGTGATGTAAAGATTCCATCAGCAGTAA 1899
Query 1851 TTATTGACCCTGCTTTACAACAGCACTATGTCCTTCAAGATAAGTTCAGCTATTCGTCAC 1910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1900 TTATTGACCCTGCTTTACAACAGCACTATGTCCTTCAAGATAAGTTCAGCTATTCGTCAC 1959
Query 1911 TGGTCGACTTTCTTGATGGATATCTCAATGGAAGTCTATCTCCTTATACACAGTCTGAAT 1970
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1960 TGGTCGACTTTCTTGATGGATATCTCAATGGAAGTCTATCTCCTTATGCACAGTCTGAAT 2019
Query 1971 CTAGCATTCAGACGCCTAAAAAAGCTACAGTTCCACCTTTTGTTAATCTGGATTTTCACG 2030
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 2020 CTAGCATTCAGACGCCTAAAAGAGCTGCAGTTCCACCTTTTGTTAATCTGGATTTTCACG 2079
Query 2031 AGGTGGATTCTATTCCCCGTGTCACAGTCAGTACCTTCTCCCATATGGTTCATGCATGGG 2090
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2080 AGGTGGATTCTATTCCCCGTGTCACAGTCAGTACCTTCTCCCACATGGTTCATGCATGGG 2139
Query 2091 ATCAATCCAGTGCAGAGAAGGTTCCTTGTCCTCTGTGCCAGGACGTTTTGGTCCTTTTTA 2150
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2140 ATCAATCCAGTGCAGAGAAGGCTCCTTGTCCTCTGTGCCAGGACGTTTTGGTCTTTTTTA 2199
Query 2151 GTAATAACT-GGTGTGGGTTTTGTCAGAGGATGGAGCTAGTTCTGCATGAAGTGTACCGA 2209
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2200 GTAATA-CTTGGTGTGGGTTTTGTCAGAGGATGGAGCTAGTTCTGCATGAAGTTTACCGA 2258
Query 2210 TCACTAAAAGAATATAAAGCGATTATACAAGGAGGATCTACGAACAATCAAAG 2262
||| |||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 2259 TCATTAAAGGAATATAAAGCGATTATACAAGGAGGATCCAGGAACAATCAAAG 2311
Score = 1199 bits (649), Expect = 0.0
Identities = 747/793 (94%), Gaps = 11/793 (1%)
Strand=Plus/Plus
Query 2271 CAGCCGAGAGAAACAAAGTCACTCCATATGAAGGGGAGACATCTGTAACTGACATAACAG 2330
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2455 CAGCCGAGAGAAACAAAGTCACTCCATATGAAGGGGAGTCATCTGTAACTGACATAACAG 2514
Query 2331 AGTTTCTAGCTCGCCATGCGAATAAATCTCGTGAGTTTTTCAGACTCCTTCCTTCTCTGT 2390
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||
Sbjct 2515 AGTTTCTAGCTCGCCATGCGAATAACTCTCGCGAGTTTTTCAGACTCCTTCCTACTCTGT 2574
Query 2391 CTAGAAATGGAAGAAGAAACTCAAACAA-GTCGGATCA---ATCTTCATCTGCGGTAGAC 2446
|||||||||||||||||||||||||||| || |||||| ||||||||||||||| |
Sbjct 2575 CTAGAAATGGAAGAAGAAACTCAAACAAGGT-GGATCAGTCTTCTTCATCTGCGGTA-AA 2632
Query 2447 T-ATAAAGTGACAGATGGTGATAAACTTGTTGAGGTCGTTTTAAAGAACAGAGAGCCCGC 2505
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2633 TAATAAAGTGACAGATGGTGATAAACTTGTTGAGGTCGTTTTAAGGAACAGAGAGCCCGC 2692
Query 2506 TGAAAGAGAGGTAAACCATGACCAGGTCGATTCCGAATCGCCTCCAACACACTCGCTCAC 2565
|||||||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 2693 TGAAAGAGAGGTAAACCACGACCAGGTCAATTCCCAATCGCCTCCAATACACTCGCTCAC 2752
Query 2566 AACCGCTCCCCAAGTGAAAACCGGCACAATCCTGGTCGCTACAGAAAAGCTAGCTGCCTC 2625
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 2753 AAACGCTCCCCAAGTGAAAACTGGCACAGTCCTGGTCGCTACAGAAAAGCTAGCTGCCTC 2812
Query 2626 CC-AAGCATTTGCCAAATCAAAGATTCTGATCATAAAAGCAGGCCCCGA-ATTCGGTTTC 2683
|| || ||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 2813 CCTAA-CATTTGCCAAATCAAAGATTCTGATCATAAAAGCAGGCCCCGAGA-TCGGTTTC 2870
Query 2684 CTGGGTCTAATCTTCAACAAAAGGATAAGGTGGAAATCGTTCCCTGACCTAGGGGAAACA 2743
||||| |||||||| |||||| |||||||||||||||| ||||||||||| || ||||||
Sbjct 2871 CTGGGCCTAATCTTTAACAAACGGATAAGGTGGAAATCATTCCCTGACCTCGGTGAAACA 2930
Query 2744 GCCGAGCTCTTGAAAGAGACTCCTCTATTGTTCGGAGGTCCCGTCGTGGATCCAGGAATA 2803
|||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 2931 GCCGAGCTCTTGAAAGAGACTCCTCTATCGTTCGGAGGTCCTGTAGTGGATCCAGGAATA 2990
Query 2804 CCACTTTTAGCTCTGACCCGAGAGAAAGACTCATCCACGGACCATGATCACCCGGAAATC 2863
||||| |||||||||||||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 2991 CCACTATTAGCTCTGACCCGAGAGCGAGACTCTTCCACAAACCATGATCACCCGGAAATC 3050
Query 2864 TCACCAGGCGTTTATTTCTTAGATCATCAATCCGTGGCCCGTCGAATCCAAGAGTTGAAA 2923
||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 3051 TCACCAGGCGTGTATTTCCTAGATCATCAATCTGTGGCCCGTCGAATCCAAGAGTTGAAA 3110
Query 2924 TCTAGAGAGCTAAATCCAAGTGAGTACTGGTTTTTCTTGGGATACTCAAGCTGGAGTTAT 2983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3111 TCTAGAGAGCTAAATCCAAGTGAGTACTGGTTTTTCTTGGGATACTCAAGCTGGAGTTAT 3170
Query 2984 GAGCAGTTGTTTGATGAGATAGGTCTTGGAGTATGGGATGTTGATAACAGTGACATTGAC 3043
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 3171 GAGCAGTTGTTTGATGAGATCGGTCTTGGAGTGTGGGATGTTGATAACAGTGACATTGAC 3230
Query 3044 TTTGCCTGGCCTT 3056
||||| |||||||
Sbjct 3231 TTTGCTTGGCCTT 3243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157273366305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5