BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479497
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19800.1 | Symbols: | Protein of unknown function (DUF177) ... 1138 0.0
> AT3G19800.1 | Symbols: | Protein of unknown function (DUF177)
| chr3:6876114-6877642 FORWARD LENGTH=900
Length=900
Score = 1138 bits (616), Expect = 0.0
Identities = 698/736 (95%), Gaps = 11/736 (1%)
Strand=Plus/Plus
Query 1 GAATCATCATCCATGGCTGTACGTTGTTTGTTCTCTCCAAATCTCTTGAACTCGAAGAAC 60
|||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||
Sbjct 28 GAATCATCATCCATGGATGTACGTTGTTTGATCTCTCCAAATCTTTTGAACTCGAAGATT 87
Query 61 AAAGTTTCCGGCAATAATCATCACCTTCCCTTTTCTTCCCTCTCCAAGAAACACCAAGCG 120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 88 AAAGTTTCCGGCAATACTCATCACCTTCCCTTTTCTTCCCTCTCCAAGAAACACCAAGCT 147
Query 121 TCTT---C----C--GCAGCCATTAATGGAGGAGGGAGCTCAAAAACAGTGAAGCGTCTG 171
|||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 TCTTCCCCGATACAGGCAGCCATTAATGGAGGAGGGAGCTCAAAAACAGTGAAGCGTCTG 207
Query 172 ATCACTTTATCTCCTAGTGAAGGAAAATGGAATGGAAACTGGAACACTCAGTACGATGTC 231
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 208 ATCACTTTATCTCCTAGTGAAGGCAAATGGAATGGAAATTGGAAGACTCAGTACGATGTC 267
Query 232 TCTCTGCGTGATCTTCACCTTCAAGATCTTGTTGAAGATGGCCCTCCCAATTCCCGTGTC 291
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 268 TCTCTGCGTGATCTTCAACTCCAAGACCTTGTTGAAGATGGCCCTCCCAATTCCCGTGTC 327
Query 292 TCTGTCGACCTCTCTGTCCAAAGGCACGCGAGCATGGGCCTCTCAGTAGATGGAAGAATC 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TCTGTCGACCTCTCTGTCCAAAGGCACGCGAGCATGGGCCTCTCAGTAGATGGAAGAATC 387
Query 352 ATGACTTCTATCGCAAGAAAGTGCAGGATTTGCTCTTCTCTTTATCCTCGACTGATTGAT 411
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 388 ATGACTTCTATCGCAAGAAAGTGCAGCATTTGCTCTTCTCTTTATCCTCGACTGATCGAT 447
Query 412 ACAAGTTTCACTGTCTGGATTTTGCCATCAAGCCGGGAAAATCGAGCTTCAACACTGCCA 471
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ACAAGTTTCACCGTCTGGATTTTGCCATCAAGCCGGGAAAATCGAGCTTCAACACTGCCA 507
Query 472 GAAATTGGCGGCGATGATCCTTCGGTAATATATGTGAGACCTGGATATGAAGCTAACCTT 531
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 508 GAAATTGGCGGCGATGATCCTTCGGTGATATATGTCAGACCTGGATATGAAGCTAACCTT 567
Query 532 GATTCCCTTGTACAAGACACTATCCGACTCACAACTTATGCTAAAGATATATGCTCCGAT 591
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 568 GATTCCCTTGTGCAAGACACTATCCGCCTCACAACTTATGCTAAAGATATATGCTCGGAT 627
Query 592 TCCTGCGAAAAATCGGAACCAACACTGCATTACGTTGGTGAGACAAATACAGCTTCTGTT 651
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 628 TCCTGCGAAAAATCGGAACCAACACTGCACTACGTTGGTCAGACAAATACAGCTTCTGT- 686
Query 652 C-ATAAGCGATGGTCAAGACTACTTGAGCTTAAGAAGAAGTAGAAACCTTTAAATTCTTT 710
| ||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 687 CGATAAGAGATGGTCAAGACTACTTGAACTTAAGAAGAAGTAGAAACCTTTTTATTCTTT 746
Query 711 GAATCTCTCTGTTCAA 726
||||||||||||||||
Sbjct 747 GAATCTCTCTGTTCAA 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5