BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479498 Length=1311 Score E Sequences producing significant alignments: (Bits) Value AT3G19810.1 | Symbols: | Protein of unknown function (DUF177) ... 1844 0.0 > AT3G19810.1 | Symbols: | Protein of unknown function (DUF177) | chr3:6877575-6879399 REVERSE LENGTH=1399 Length=1399 Score = 1844 bits (998), Expect = 0.0 Identities = 1160/1234 (94%), Gaps = 28/1234 (2%) Strand=Plus/Plus Query 1 GAAATTGACCGGGTGAG--GTTTTAGGATAAA-CTAAGCAGCCATTTCCGAGTAAAGAAG 57 ||| ||||||||||||| |||||||||||| | |||||||||||||||||| |||||| Sbjct 1 GAAGTTGACCGGGTGAGACTTTTTAGGATAAACCCAAGCAGCCATTTCCGAGT-AAGAAG 59 Query 58 AGCTCTGTTTCTGAAAGAAATTTTACAGAGTCGATCGTCTAAAGC---GTTAAAGCACTT 114 ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||| Sbjct 60 AGCTCTGTTTCTGAAAGAAGTTTTACAGAGTCGATCGTCTAAAGCGTTGTTGAAGCACTT 119 Query 115 CTTAGTGGTAATGCTCTGTTTCAAGCTCAACAAACCCAATCCTATTGGGGATTTGGCTGG 174 ||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||| Sbjct 120 GTTAGTGG---TGCTCTGTTTCAAGCTGGATAAACCCAATCCTATT-GGGATTTGGCTGG 175 Query 175 ATTTTATACCATATTTTAGCATGATTGTTTGATAAAC-CTTGATAGATTGCCTCTTGTTG 233 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 176 ATTTTATACCATATTTTAGCATGATTGTTTGATAAACGCTTGATAAATTGCCTCTTGTTG 235 Query 234 TAACCTTCGCTACGAAAATGTCTCTGGTTTGCTCTTCATCTTGTGTAGCTCCCTTATCAC 293 | ||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 236 TCACCTTTGCTACGAAAATGTCTCTGGTTTGCTCTTTATCTTGTGTAGCTCCCTTGCCAC 295 Query 294 AGACTAGACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTATGC- 352 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 296 AGACTAAACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTAT-CT 354 Query 353 TCTCCCGCCGGCTACCCTAATTTT---ACC------AGGAAGCATATCAGTTACTTGTTC 403 |||||||| ||||| ||||||||| ||| |||||||||||||||||||||||| Sbjct 355 TCTCCCGCTGGCTATCCTAATTTTACCACCGGTATTAGGAAGCATATCAGTTACTTGTTC 414 Query 404 ACAGAACCGCTTAAGCTTCGTTGGCTAGCAAAGAGTCGGATATTAGCTAGTCAGGAGTCT 463 || |||||| | ||||||| | |||||||||||||||||||||||| ||||||||||||| Sbjct 415 ACTGAACCGATCAAGCTTCCTAGGCTAGCAAAGAGTCGGATATTAGTTAGTCAGGAGTCT 474 Query 464 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 475 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 534 Query 524 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGCCACACATGTGGAA 583 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 535 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGTTACACATGTTGAA 594 Query 584 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGATTGTCAACAGAGGTCTCGAAGAAG 643 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 595 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGGTTGTCAACAGATGTCTCGAAGAAG 654 Query 644 AGAGCTTCCGCAATGGGACTAAGAGTGACAAAAGATGTAAAGGATTATCCAGATGGCACG 703 |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 655 AGAGCTTCTGCAATGGGACTTAGAGTGACAAAAGATGTCAAGGATTATCCAGATGGCACA 714 Query 704 CCGGTTCAAGTTTCGGTTGATGTCATAAGAAAGAAGAAGAAACTGAGACTCGATGGAATT 763 || |||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 715 CCAGTTCAAGTTTCGGTTGATGTCATAAGGAAGAAGAAGAAGCTGAGACTTGATGGAATT 774 Query 764 GTCAGGACTGTTATCACACTCGGCTGCAATAGATGTGGTGAGTCAACAGGTGAGAGCATC 823 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 775 GTCAGGACTGTTATCACACTCGGCTGCAACAGATGTGGTGAGTCAACAGGTGAGAGCATC 834 Query 824 TTCTCCAACTTCTCGCTATTACTAACCGAAGATCCAGTTGAAGAACCCGATGTCATTGAT 883 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 835 TTCTCCAACTTCTCGCTATTACTAACCGAAGAGCCAGTTGAAGAACCCGATGTCATTGAT 894 Query 884 CTAGGATTCACATTCGG-AGGTGACAAAGAAGAAGGCGAAgatgatgatg---atgatga 939 ||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| Sbjct 895 CTAGGATTCACATTCGGTA-ATGACAAAGAAGAAGGCGAAGATGATGATGATAATGATGA 953 Query 940 tTCATGGATAGATTGGGAGGATACGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 999 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 954 TTCATGGATAGATTGGGAGGATAAGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 1013 Query 1000 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1059 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1073 Query 1060 TGCATGTAAAGGAATGTGCTTGAAATGCGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1119 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1074 TGCATGTAAAGGAATGTGCTTGAAGTGTGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1133 Query 1120 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAACCTGAGAGAGCAAATGCA 1179 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1134 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAATCTTAGAGAGCAAATGCA 1193 Query 1180 ACAAAAAGAGGGACTGAGGAACTAAACTCAACTC 1213 ||||||||||||||| |||||||||||||||||| Sbjct 1194 ACAAAAAGAGGGACTAAGGAACTAAACTCAACTC 1227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64507700325 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5