BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479498
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19810.1 | Symbols: | Protein of unknown function (DUF177) ... 1844 0.0
> AT3G19810.1 | Symbols: | Protein of unknown function (DUF177)
| chr3:6877575-6879399 REVERSE LENGTH=1399
Length=1399
Score = 1844 bits (998), Expect = 0.0
Identities = 1160/1234 (94%), Gaps = 28/1234 (2%)
Strand=Plus/Plus
Query 1 GAAATTGACCGGGTGAG--GTTTTAGGATAAA-CTAAGCAGCCATTTCCGAGTAAAGAAG 57
||| ||||||||||||| |||||||||||| | |||||||||||||||||| ||||||
Sbjct 1 GAAGTTGACCGGGTGAGACTTTTTAGGATAAACCCAAGCAGCCATTTCCGAGT-AAGAAG 59
Query 58 AGCTCTGTTTCTGAAAGAAATTTTACAGAGTCGATCGTCTAAAGC---GTTAAAGCACTT 114
||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||
Sbjct 60 AGCTCTGTTTCTGAAAGAAGTTTTACAGAGTCGATCGTCTAAAGCGTTGTTGAAGCACTT 119
Query 115 CTTAGTGGTAATGCTCTGTTTCAAGCTCAACAAACCCAATCCTATTGGGGATTTGGCTGG 174
||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct 120 GTTAGTGG---TGCTCTGTTTCAAGCTGGATAAACCCAATCCTATT-GGGATTTGGCTGG 175
Query 175 ATTTTATACCATATTTTAGCATGATTGTTTGATAAAC-CTTGATAGATTGCCTCTTGTTG 233
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 176 ATTTTATACCATATTTTAGCATGATTGTTTGATAAACGCTTGATAAATTGCCTCTTGTTG 235
Query 234 TAACCTTCGCTACGAAAATGTCTCTGGTTTGCTCTTCATCTTGTGTAGCTCCCTTATCAC 293
| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 236 TCACCTTTGCTACGAAAATGTCTCTGGTTTGCTCTTTATCTTGTGTAGCTCCCTTGCCAC 295
Query 294 AGACTAGACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTATGC- 352
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 296 AGACTAAACAGTCGCGTCCAAGTTTTCTGAAACTCGAAACATGTACCTTAAGTTTAT-CT 354
Query 353 TCTCCCGCCGGCTACCCTAATTTT---ACC------AGGAAGCATATCAGTTACTTGTTC 403
|||||||| ||||| ||||||||| ||| ||||||||||||||||||||||||
Sbjct 355 TCTCCCGCTGGCTATCCTAATTTTACCACCGGTATTAGGAAGCATATCAGTTACTTGTTC 414
Query 404 ACAGAACCGCTTAAGCTTCGTTGGCTAGCAAAGAGTCGGATATTAGCTAGTCAGGAGTCT 463
|| |||||| | ||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 415 ACTGAACCGATCAAGCTTCCTAGGCTAGCAAAGAGTCGGATATTAGTTAGTCAGGAGTCT 474
Query 464 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTTACAGAGACCAGCACAATAGATATGGATTGGGAAGATCAGGAGGAAATTGAGGATACT 534
Query 524 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGCCACACATGTGGAA 583
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 535 GGGTCACCTTGGGAAGGTTCGGTTATGTATAGGAGAAATGCTTCAGTTACACATGTTGAA 594
Query 584 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGATTGTCAACAGAGGTCTCGAAGAAG 643
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 595 TATTGCACTACCTTAGAGAGGCTTGGGTTGGGAAGGTTGTCAACAGATGTCTCGAAGAAG 654
Query 644 AGAGCTTCCGCAATGGGACTAAGAGTGACAAAAGATGTAAAGGATTATCCAGATGGCACG 703
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 655 AGAGCTTCTGCAATGGGACTTAGAGTGACAAAAGATGTCAAGGATTATCCAGATGGCACA 714
Query 704 CCGGTTCAAGTTTCGGTTGATGTCATAAGAAAGAAGAAGAAACTGAGACTCGATGGAATT 763
|| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 715 CCAGTTCAAGTTTCGGTTGATGTCATAAGGAAGAAGAAGAAGCTGAGACTTGATGGAATT 774
Query 764 GTCAGGACTGTTATCACACTCGGCTGCAATAGATGTGGTGAGTCAACAGGTGAGAGCATC 823
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 775 GTCAGGACTGTTATCACACTCGGCTGCAACAGATGTGGTGAGTCAACAGGTGAGAGCATC 834
Query 824 TTCTCCAACTTCTCGCTATTACTAACCGAAGATCCAGTTGAAGAACCCGATGTCATTGAT 883
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 835 TTCTCCAACTTCTCGCTATTACTAACCGAAGAGCCAGTTGAAGAACCCGATGTCATTGAT 894
Query 884 CTAGGATTCACATTCGG-AGGTGACAAAGAAGAAGGCGAAgatgatgatg---atgatga 939
||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 895 CTAGGATTCACATTCGGTA-ATGACAAAGAAGAAGGCGAAGATGATGATGATAATGATGA 953
Query 940 tTCATGGATAGATTGGGAGGATACGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 999
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 954 TTCATGGATAGATTGGGAGGATAAGCTTCATTTTCCACCTGAGGTGAAAGAAATAGATAT 1013
Query 1000 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CTCAAAGCATATAAGAGACTTGGTGCATTTAGAAATCACCATCACTGCGATATGCGATTC 1073
Query 1060 TGCATGTAAAGGAATGTGCTTGAAATGCGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1119
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1074 TGCATGTAAAGGAATGTGCTTGAAGTGTGGTGCGAATCTGAATAAGAGGAAATGTGATTG 1133
Query 1120 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAACCTGAGAGAGCAAATGCA 1179
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1134 TGGCAGAGAAGAGAAGGATAAAGGATATGGACCTCTCGGAAATCTTAGAGAGCAAATGCA 1193
Query 1180 ACAAAAAGAGGGACTGAGGAACTAAACTCAACTC 1213
||||||||||||||| ||||||||||||||||||
Sbjct 1194 ACAAAAAGAGGGACTAAGGAACTAAACTCAACTC 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5