BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479500
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19820.1 | Symbols: DWF1, DIM, EVE1, DIM1, CBB1 | cell elong... 3049 0.0
> AT3G19820.1 | Symbols: DWF1, DIM, EVE1, DIM1, CBB1 | cell elongation
protein / DWARF1 / DIMINUTO (DIM) | chr3:6879617-6881652
REVERSE LENGTH=1940
Length=1940
Score = 3049 bits (1651), Expect = 0.0
Identities = 1827/1911 (96%), Gaps = 15/1911 (1%)
Strand=Plus/Plus
Query 108 CAGTGAGGAGAGGAAATGTCGGATCTTCAGACACCGCTTGTGAGGCCCAAGAGGAAGAAG 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 CAGTGAGGAGAGGAAATGTCGGATCTTCAGACACCGCTTGTGAGGCCCAAGAGGAAGAAG 81
Query 168 ACTTGGGTTGATTACTTTGTCAAGTTCCGATGGATCATTGTCATCTTCATCGTCCTTCCA 227
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 82 ACTTGGGTTGATTACTTTGTCAAGTTCAGATGGATCATTGTCATCTTCATCGTCCTTCCA 141
Query 228 TTCTCAGCCACATTCTACTTCCTCATCTACCTCGGGGACATGTGGTCTGAGTCCAAGTCC 287
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 142 TTCTCAGCCACATTCTACTTCCTCATCTACCTCGGGGACATGTGGTCAGAGTCCAAGTCC 201
Query 288 TATGAGAAACGCCAGAAGGAACACGACGAGAATGTCAAGAAAGTCATCAAAAGGCTTAAG 347
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TTTGAGAAACGTCAGAAGGAACACGACGAGAATGTCAAGAAAGTCATCAAAAGGCTTAAG 261
Query 348 AATAGGGACGCTGCCAAGGACGGGCTTGTCTGCACTGCGCGTAAGCCGTGGATCGCTGTG 407
|||||| ||| ||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 262 GGTAGGGATGCTTCCAAGGACGGGCTTGTCTGCACTGCTCGTAAGCCCTGGATCGCTGTT 321
Query 408 GGAATGAGGAACGTTGACTACAAGAGAGCCCGGCATTTCGAGGTTGACTTGGGCGAGTTT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 322 GGAATGAGGAACGTTGACTACAAGAGAGCCCGGCATTTCGAGGTTGACTTGGGGGAGTTC 381
Query 468 CGTAACATCCTTGAGATCAACAAGGAGAAGATGACTGCTAGAGTGGAGCCTCTTGTCAAC 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 382 CGTAACATCCTTGAGATCAACAAGGAGAAGATGACTGCTAGAGTGGAGCCTCTTGTTAAC 441
Query 528 ATGGGACAGATTTCCCGTGCCACCGTCCCAATGAACCTGTCTCTCGCTGTTGTTGCTGAG 587
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATGGGACAGATTTCCCGTGCTACCGTCCCAATGAACCTGTCTCTCGCTGTTGTTGCTGAG 501
Query 588 CTTGACGACCTTACCGTTGGTGGACTCATCAATGGATATGGTATTGAAGGAAGCTCTCAC 647
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 502 CTTGATGACCTTACCGTTGGTGGACTTATCAATGGATATGGTATTGAAGGAAGCTCTCAC 561
Query 648 ATCCACGGTTTGTTTGCGGATACCGTTGAGGCTTACGAGATCGTTCTTGCGGGTGGGGAA 707
||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 562 ATCTACGGTTTGTTTGCTGATACCGTTGAGGCTTACGAGATTGTTCTTGCGGGTGGAGAG 621
Query 708 CTTGTCCGTGCCACAAAGGATAATGAGTATTCCGATCTTTTCTACGCAATCCCGTGGTCG 767
|||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 622 CTTGTCCGCGCCACAAGGGATAATGAGTATTCTGATCTTTACTACGCAATCCCGTGGTCG 681
Query 768 CAAGGAACTCTTGGACTCCTTGTAGCTGCTGAGATCAAGCTTATTAAAATCAAGGAGTAC 827
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 682 CAAGGAACTCTTGGACTCCTTGTAGCTGCTGAGATCAGGCTTATTAAAGTCAAGGAGTAC 741
Query 828 ATGAGACTCACTTACATACCAGTTAAGGGAGATCTTCAAGCCTTAGCTCAAGGTTACATT 887
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 742 ATGAGACTCACTTACATACCAGTCAAGGGTGATCTTCAAGCCTTAGCTCAAGGTTACATT 801
Query 888 GATTCTTTCGCTCCCAAAGATGGTGACAAGTCGAAAATCCCGGATTTCGTCGAAGGCATG 947
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 802 GATTCTTTTGCTCCCAAAGACGGTGACAAGTCGAAAATCCCGGATTTCGTCGAAGGCATG 861
Query 948 GTTTACAACCCGACGGAAGGAGTGATGATGGTTGGGACATACGCATCGAAAGAAGAGGCG 1007
|||||||| || ||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 862 GTTTACAATCCAACGGAAGGAGTGATGATGGTTGGAACATATGCATCTAAAGAAGAGGCA 921
Query 1008 AAGAAGAAAGGAAACAAAATCAACAATGTGGGATGGTGGTTCAAGCCGTGGTTCTACCAG 1067
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 AAGAAGAAAGGGAACAAAATCAACAATGTGGGATGGTGGTTCAAGCCGTGGTTCTACCAG 981
Query 1068 CACGCGCAGACCGCCCTGAAAAAGGGACAGTTTGTTGAGTACATCCCGACTAGGGAATAC 1127
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 982 CACGCGCAGACCGCCCTGAAAAAGGGACAGTTTGTTGAGTACATCCCAACTCGTGAATAC 1041
Query 1128 TACCACAGGCACACAAGGTGCTTGTACTGGGAAGGGAAGCTTATTCTTCCATTTGGTGAT 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 TACCACAGGCACACAAGGTGCTTGTACTGGGAAGGGAAGCTTATTCTTCCATTTGGTGAT 1101
Query 1188 CAGTTCTGGTTTAGGTACCTCTTAGGTTGGTTGATGCCTCCAAAGGTCTCTCTTCTTAAG 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 CAGTTCTGGTTTAGGTACCTCTTAGGTTGGTTGATGCCTCCAAAGGTCTCTCTTCTTAAG 1161
Query 1248 GCCACTCAAGGTGAAGCTATCAGGAACTATTACCATGATATGCATGTTATTCAGGACATG 1307
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1162 GCCACTCAAGGTGAAGCTATCAGGAACTATTACCATGATATGCATGTTATTCAGGATATG 1221
Query 1308 CTTGTTCCTCTTTACAAGGTTGGCGATGCCCTCGAATGGGTTCACCGCGAAATGGAGGTG 1367
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1222 CTTGTTCCTCTTTACAAGGTTGGCGATGCACTCGAATGGGTCCACCGCGAAATGGAGGTG 1281
Query 1368 TATCCAATTTGGCTTTGCCCACACAAACTCTACAAGCAGCCAATCAAAGGCCAGATCTAT 1427
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 1282 TATCCAATTTGGCTTTGCCCACACAAACTCTTCAAGCAGCCAATCAAAGGCCAAATCTAC 1341
Query 1428 CCAGAACCAGGCTTTGAGTACGAAAACAGACAAGGAGACACAGAAGATGCACAGATGTAC 1487
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 CCAGAGCCAGGCTTCGAGTACGAAAACAGACAAGGAGACACAGAAGATGCACAGATGTAC 1401
Query 1488 ACTGATGTTGGAGTCTACTACGCACCTGGACC-TGTCCTAAGAGGTGAAGAGTTTGATGG 1546
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1402 ACTGATGTTGGAGTCTACTACGCACCTGG-CTGTGTCCTAAGAGGTGAAGAGTTTGATGG 1460
Query 1547 ATCAGAAGCTGTACGTAAGATGGAGAAATGGCTGATTGAGAACCATGGATTCCAGCCTCA 1606
||||||||| || |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1461 ATCAGAAGCAGTGCGTAGGATGGAGAAATGGCTGATAGAGAACCATGGATTCCAGCCTCA 1520
Query 1607 GTACGCGGTGTCTGAGCTCGACGAGAAGAGCTTCTGGAGAATGTTTAATGGTGAATTGTA 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 GTACGCGGTGTCTGAGCTCGACGAGAAGAGCTTCTGGAGAATGTTTAATGGTGAATTGTA 1580
Query 1667 TGAGGAGTGCCGCAAGAAGTATAGAGCTGTTGGAACGTTCATGAGTGTTTACTACAAGTC 1726
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1581 TGAGGAGTGCCGCAAGAAGTATAGAGCTATTGGAACGTTCATGAGTGTTTACTACAAGTC 1640
Query 1727 GAAGAAAGGAAGAAAGACTGAGAAAGAAGTTAGAGAAGCCGAACAAGCTCATCTCGAAAC 1786
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1641 CAAGAAAGGAAGGAAGACTGAGAAAGAAGTTAGAGAAGCCGAACAAGCTCATCTCGAAAC 1700
Query 1787 TGCTTATGCCGAGGCAGATTAAGTAATAA---GCCTTGGTTTGATGAAATGGCTTGGGAT 1843
||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||
Sbjct 1701 TGCTTATGCCGAGGCAGATTAAGTAATAATAAGCCTTGGTTTGATGTAATGGCTCGGGAT 1760
Query 1844 TATTATTGTTATTGCTAGTAGTGTCTGTTATGTTGTT-T--CCTAATTTCAGTTCTAGTG 1900
|||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 1761 GATTATTGTTATTCCTAGTAGTGTCTGTTATGTTGTTGTTTCCTAATTTCAGTTTTAGTG 1820
Query 1901 TCTTGAAGACTAttgttgttgttgtttgcttctttgttgttgttgttgtttgACTTATTA 1960
||||||||||| |||||||||||||||||||||| ||||||||| | | ||| |||
Sbjct 1821 TCTTGAAGACTCTTGTTGTTGTTGTTTGCTTCTT-GTTGTTGTT-T-G----ACTCATTC 1873
Query 1961 TGGTTTGAGTGGAGTTTAGAGTTTAAAACTTTTGGATTTGCTTATGAGATT 2011
||||||||||||| ||||||||||||||||||||||||||| ||||| |||
Sbjct 1874 TGGTTTGAGTGGATTTTAGAGTTTAAAACTTTTGGATTTGCCTATGAAATT 1924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99648081825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5