BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479503
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH) ... 1472 0.0
> AT3G19860.2 | Symbols: bHLH121 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr3:6903833-6906128 FORWARD
LENGTH=1288
Length=1288
Score = 1472 bits (797), Expect = 0.0
Identities = 862/892 (97%), Gaps = 10/892 (1%)
Strand=Plus/Plus
Query 240 AAG-GGAGGTCATGGACGTTTCTGCTAGAAAGTCACAAAAGGCAGGGCGCGAAAAATTGA 298
||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 158 AAGAGGAGGTCATGGACGTTTCTGCTAGAAAGTCACAAAAAGCTGGGCGCGAAAAGTTGA 217
Query 299 GGAGGGAAAAACTTAATGAGCATTTTGTTGAATTGGGAAATGTACTCGATCCAGAGAGAC 358
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 218 GGAGGGAAAAACTGAATGAGCATTTTGTTGAACTGGGAAATGTACTCGATCCAGAGAGAC 277
Query 359 CCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CCAAGAATGACAAAGCCACGATTCTGACTGATACTGTTCAGTTGTTGAAAGAGCTCACAT 337
Query 419 CTGAAGTCAACAAACTGAAATCTGAGTACACCGCATTGACAGATGAGTCCCGCGAGTTGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 CTGAAGTCAACAAACTGAAATCTGAGTACACCGCATTGACAGATGAGTCCCGCGAGTTGA 397
Query 479 CACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGAGATAGAGAATC 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 398 CACAGGAGAAAAACGACCTGAGAGAAGAAAAGACATCGCTGAAATCAGATATAGAGAATC 457
Query 539 TTAATCTCCAATACCAGCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATC 598
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 TCAATCTTCAATACCAGCAGAGATTAAGGTCAATGTCTCCATGGGGAGCTGCGATGGATC 517
Query 599 ACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCAATGCCTATGGCTATGCCTC 658
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 518 ACACAGTCATGATGGCTCCACCACCCTCCTTTCCATACCCTATGCCTATTGCTATGCCTC 577
Query 659 CCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 CCGGGTCAATCCCAATGCATCCATCAATGCCATCTTACACATACTTTGGGAACCAGAACC 637
Query 719 CTAGCATGATCCCAGCTCCATGTCCTACATACATGCCGTACATGCCTCCTAATACAGTTG 778
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 638 CTAGCATGATCCCAGCTCCATGTCCTACATACATGCCCTACATGCCTCCTAATACAGTCG 697
Query 779 TTGAACAACAATCCGTGCACATTCCACAGAACCCGGGTAACCGTTCTCGGGAACCTAGAG 838
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 698 TTGAGCAACAATCCGTGCACATTCCACAGAACCCCGGTAACCGTTCTCGGGAACCTAGAG 757
Query 839 CAAAGGTTTCAAGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CAAAGGTTTCAAGAGAGAGCAGATCTGAGAAAGCAGAGGACTCCAACGAAGTTGCAACAC 817
Query 899 AACTCGAGTTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAAGGCCAGAGA 958
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 AACTCGAATTAAAAACCCCTGGATCTACTTCTGATAAGGATACATTGCAAAGGCCAGAGA 877
Query 959 AGACAAAGAGATGTAAGAGAaacaacaacaacaacaacaacaacTCCGTAGAAGAAAGCT 1018
||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 878 AGACAAAGAGATGTAAGAGAAACAACAACAACAACT-CAA----T----AGAAGAAAGCT 928
Query 1019 CTCATTCTAGCAAATGTTCATCTTCTCCGAGCGTACGAGACCACAGTTCTTCCAGTAGCG 1078
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 CTCATTCTAGCAAGTGTTCATCTTCTCCGAGCGTACGAGACCACAGTTCTTCCAGTAGCG 988
Query 1079 TAGCTGGTGGCCAAAAACCTGATGACGCAAAATGACTCGAAAGAATTTGATG 1130
||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 989 TAGCTGGTGGCCAAAAACCTGATGATGCAAAATGATTCGAAAGAATCTGATG 1040
Score = 172 bits (93), Expect = 5e-42
Identities = 125/138 (91%), Gaps = 11/138 (8%)
Strand=Plus/Plus
Query 1 GGGGATAAGAGAAAATGGAATAATGCTTGTGAGC----AGAGAGAGCGAG-GAGGAGGCT 55
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 12 GGGGATAAGAGAAAATGGAATAATGCTTGTGAGCAGAGAGAGAGAGCGAGCGAGGAGGCT 71
Query 56 AGAGAA-CGAGAATCTTTCTTCGCCGAACCACCTTGTCTTCTCTTCTCTTAGCTCATCGA 114
|||||| |||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 72 AGAGAATCGAGAATCGATCTTCGCCGAACCACCTTGTCTTCTCTT-----AGCTCATCGA 126
Query 115 ATCTCTCCGTCGCCGTCG 132
||||||||||||||||||
Sbjct 127 ATCTCTCCGTCGCCGTCG 144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5