BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg479506 Length=933 Score E Sequences producing significant alignments: (Bits) Value AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6... 665 0.0 AT3G19880.1 | Symbols: | F-box and associated interaction doma... 206 4e-52 AT5G60560.1 | Symbols: | F-box and associated interaction doma... 182 7e-45 > AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6916142 REVERSE LENGTH=1233 Length=1233 Score = 665 bits (360), Expect = 0.0 Identities = 442/481 (92%), Gaps = 8/481 (2%) Strand=Plus/Plus Query 1 ATGACGATGATGTCTGATCTTTCCAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCTG 60 ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1 ATGACTATGATCTCTGATCTTTCGAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCCG 60 Query 61 ATAACTTCTCTAGGAGCAGTGAGATCCACTCGCAAACAATGGAACGCCTCATCCAAAGAC 120 ||||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||| Sbjct 61 ATAACTTCTCTTGGAGCCGTGAGATCCACTCACAAACAATGGAACGCCTTATCCAAAGGT 120 Query 121 CGGCTGTTGTGTAAAGCAGAA-CCAAGGGAGCAGTTTCTGA-GGTTCATGGTGATGGATC 178 |||||||||| |||||| ||| | || ||| |||||||| | |||||||||||||||||| Sbjct 121 CGGCTGTTGTATAAAGCGGAAGCGAA-GGATCAGTTTCT-AGGGTTCATGGTGATGGATC 178 Query 179 ATAGGTTTCTT-TCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGACGGTGAAGTC 237 |||||||| || ||||||| |||| ||||| | ||||| || |||||||||||||||| | Sbjct 179 ATAGGTTT-TTATCAATGATATTCCATCTCAATGGAATTCTAAAAGGAGACGGTGAAGGC 237 Query 238 TTTGTTCGTCCATCTATCAAGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTTGATCGTCCATCTATCAGGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297 Query 298 GTGTTTCATTGCGATGGTTTAGTGTTGTGCGT-CACAAATGACAACTCAAGTCTCGTGGT 356 |||||||| ||||||||||||||||||||||| | ||| ||||||||| ||| | ||||| Sbjct 298 GTGTTTCAATGCGATGGTTTAGTGTTGTGCGTTC-CAAGTGACAACTCTAGTGTTGTGGT 356 Query 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAACAAGAGAACCTCACGACGAATC 416 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAGCAAGAGAACCTCACGACGAATC 416 Query 417 AGACATGTTTGCTCTAGGATACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 417 AGACATGTTTGCTCTCGGTTACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476 Query 477 T 477 | Sbjct 477 T 477 Score = 584 bits (316), Expect = 5e-166 Identities = 411/456 (90%), Gaps = 10/456 (2%) Strand=Plus/Plus Query 480 CGAGATGGCCATTTGGGTGACTACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 539 |||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 786 CGAGATGGCCATATGGGTAACCACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 845 Query 540 GTTTAAAGTTGATATGGAACCACTCATTAGGTTTGGTTTTCAATATTGTAGAGATGAAGC 599 |||||||||||||||| |||||||| |||||||||| |||||| | |||| ||||||||| Sbjct 846 GTTTAAAGTTGATATGAAACCACTCGTTAGGTTTGGCTTTCAACAATGTAAAGATGAAGC 905 Query 600 TGGCAGtttttttATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATTTAGACAGAAA 659 |||||||||||| |||||||||||||||||||||||||||||||||||| |||| | ||| Sbjct 906 TGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATCTAGATA-AAA 964 Query 660 ATC-TGATAAAAGGACCAAGAAGAAACGTTGTTACCACACGGCTTATATCGTTGGAGTGA 718 | | || |||||||| || |||| ||||||||||||||| ||||| || |||||| || Sbjct 965 AACGTGGTAAAAGGAATAACAAGACACGTTGTTACCACACAGCTTACATTATTGGAGAGA 1024 Query 719 AGGGATACTTGAGAAAAGTGGTTCTTGGAGAAGCTGTGGAGGTCAGAGAAGGCGTGTATC 778 |||||||||||| ||||| ||||||||||||||||||||||||| || ||| |||||||| Sbjct 1025 AGGGATACTTGAAAAAAGAGGTTCTTGGAGAAGCTGTGGAGGTCCGAAAAGACGTGTATC 1084 Query 779 GTAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 838 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1085 GGAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 1144 Query 839 AAGAGGAAGAGGAAGAGGAAGATATGTGCAAATCAACCAAAATGGTGGACGCAAAAGGGA 898 |||||||||||||||| ||| | | |||||||| ||||||||||||| ||||| || Sbjct 1145 AAGAGGAAGAGGAAGAT-AAG-T--G--CAAATCAATCAAAATGGTGGACACAAAAAGGC 1198 Query 899 AA-GATAAGAAGAGGAAGAGGAAGAGCAAAACGTAA 933 || | |||||||||||||||||||||||||| |||| Sbjct 1199 AACG-TAAGAAGAGGAAGAGGAAGAGCAAAAGGTAA 1233 > AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6911435-6912604 REVERSE LENGTH=1170 Length=1170 Score = 206 bits (111), Expect = 4e-52 Identities = 195/234 (83%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 1 ATGACGATGATGTCTGATCTTTC-CAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCT 59 |||||||||||| ||||||| | | |||||||||||||||||||||| |||| || || Sbjct 1 ATGACGATGATGAGTGATCTTACGC-AGGATTTGGTAGAGGAGATACTGTCTAGGGTTCC 59 Query 60 GATAACTTCTCTAGGAGCAGTGAGATCCAC-TCGCAAACAATGGAACGCCTCATCCAAAG 118 |||||||||||||||||||||||||||||| | ||||| ||||||||| | |||||||| Sbjct 60 GATAACTTCTCTAGGAGCAGTGAGATCCACCT-GCAAAGGATGGAACGCTTTATCCAAAG 118 Query 119 ACCGGCTGT-TGTGTAAAGCAGAACCAAGGGAGCAGTTTCTGAGG-TTCATGGTGATGGA 176 | ||| | | | |||| || |||||||| |||||||||| ||| |||||| || |||| Sbjct 119 AACGGAT-TCTATGTATAGGAGAACCAAAACAGCAGTTTCT-AGGGTTCATGATGTTGGA 176 Query 177 TCATAGG-TTT-CTTTCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGAC 228 | ||||| ||| || |||||| |||||||| |||||||||||||| | |||| Sbjct 177 TTATAGGCTTTGCT--CAATGAGGTTCAATCTTCACGGAATCCTCAACGAAGAC 228 Score = 82.4 bits (44), Expect = 7e-15 Identities = 124/160 (78%), Gaps = 15/160 (9%) Strand=Plus/Plus Query 490 ATTTGGGTGACTACTAAGATTGAGTCCAATGAGGTGTTGTGG-AGCAACTTGTTTAAAGT 548 |||||||| ||||||||||||||| |||||| |||||| ||| | | ||| || ||||| Sbjct 805 ATTTGGGTTACTACTAAGATTGAGCCCAATGTGGTGTTTTGGAAAC-CCTTCTTAAAAGT 863 Query 549 TGATATGGA-ACCACTCATTAGGTTTGGTTTTCAATATTGTAGAGATGAAGC-TGGCAGt 606 |||||| || | || | | | || || | ||| | | || | ||| || |||| Sbjct 864 TGATATTGAGA-CAGT-ACTCGG--TGCTCTTC-----T-T-GATTTTCAGCTTGACAGT 912 Query 607 ttttttATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTA 646 || || |||||||||||||||||||||||||||||||||| Sbjct 913 TTCTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTA 952 > AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:24345949-24347172 FORWARD LENGTH=1125 Length=1125 Score = 182 bits (98), Expect = 7e-45 Identities = 367/492 (75%), Gaps = 38/492 (8%) Strand=Plus/Plus Query 1 ATGACGATGATG-TCTGATCTTTCCAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCT 59 |||||||||||| | |||||||| |||||||||||||||||||| | | | ||| | | Sbjct 1 ATGACGATGATGAGC-GATCTTTCGGAGGATTTGGTAGAGGAGATATTGTGT-AGGGTTT 58 Query 60 -GATAACTTCTCTAGGAGCAGTGAGATCCAC-TCGCAAACAATGGAACGCCTCATCCAAA 117 |||||||||||||||||||||||||||||| | ||||| |||| | | | ||||||| Sbjct 59 CGATAACTTCTCTAGGAGCAGTGAGATCCACGT-GCAAAGGATGGTATGTTTTATCCAAA 117 Query 118 GACC-GGCTGT-TGTGTAAAGCAGAACCAAGGGAGCAGTTTCTGAGG-TTCATGGTGATG 174 || || | | | |||||||||||| ||| | | |||||||| ||| |||||| || | Sbjct 118 -ACTAGGGT-TCTATGTAAAGCAGAAACAAAGCATCAGTTTCT-AGGGTTCATGAAGAAG 174 Query 175 GATCATAGG-TTT-CTTTCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGACGG-- 230 || ||| | ||| || |||||| || ||||||| |||| | |||| | ||| || Sbjct 175 AATTATAAGCTTTGCT--CAATGAGGTTTGATCTCCATGGAAACTTCAACGAAGAAGGAG 232 Query 231 -TGAAGTCTTTGTTCGTCCATCTATCAAGGAGGT-AGGTGATATAGTTAATCAAATCGAC 288 ||||| || | |||||| || ||| || | |||| || || || ||||| | || Sbjct 233 GTGAAGAATTCATGAATCCATCAATAAAGAAG-TCAGGTAATTTACTTGATCAACTTGAT 291 Query 289 ATCTCTAAAGTGTTTCATTGCGATGGTTTAGTGTTGTGCGTCAC-AAAT-G-ACAACTCA 345 || | |||||| ||||| ||||| || ||| |||| ||||| || ||| | | ||| | Sbjct 292 ATATGTAAAGTTTTTCAATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACT 351 Query 346 AGTCTCGTGGTTTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAA--CAAGAGAAC 403 || |||||||| ||||| || |||| |||||||| || ||||||| ||| ||| | | | Sbjct 352 AGGCTCGTGGTATGGAACCCTTATTCGGGTCAAATCAGGTGGATC-AAATGCAATA-A-C 408 Query 404 -CTCACGAC-GA-ATCAGACATGTT-TGCTCTAGGATACGACAAGGACAAG-AACCACAA 458 || || || || | | || | ||| |||| | |||||| |||| || | || ||||| Sbjct 409 TCTTACCACAGATA-C-GA-AGGTTATGCTATCGGATACAACAATAACC-GTAAACACAA 464 Query 459 GATCTTGAGGTT 470 ||||||||||| Sbjct 465 AATCTTGAGGTT 476 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45612605476 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5