BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479506
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6... 665 0.0
AT3G19880.1 | Symbols: | F-box and associated interaction doma... 206 4e-52
AT5G60560.1 | Symbols: | F-box and associated interaction doma... 182 7e-45
> AT3G19890.1 | Symbols: | F-box family protein | chr3:6914910-6916142
REVERSE LENGTH=1233
Length=1233
Score = 665 bits (360), Expect = 0.0
Identities = 442/481 (92%), Gaps = 8/481 (2%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTCTGATCTTTCCAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCTG 60
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGACTATGATCTCTGATCTTTCGAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCCG 60
Query 61 ATAACTTCTCTAGGAGCAGTGAGATCCACTCGCAAACAATGGAACGCCTCATCCAAAGAC 120
||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 61 ATAACTTCTCTTGGAGCCGTGAGATCCACTCACAAACAATGGAACGCCTTATCCAAAGGT 120
Query 121 CGGCTGTTGTGTAAAGCAGAA-CCAAGGGAGCAGTTTCTGA-GGTTCATGGTGATGGATC 178
|||||||||| |||||| ||| | || ||| |||||||| | ||||||||||||||||||
Sbjct 121 CGGCTGTTGTATAAAGCGGAAGCGAA-GGATCAGTTTCT-AGGGTTCATGGTGATGGATC 178
Query 179 ATAGGTTTCTT-TCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGACGGTGAAGTC 237
|||||||| || ||||||| |||| ||||| | ||||| || |||||||||||||||| |
Sbjct 179 ATAGGTTT-TTATCAATGATATTCCATCTCAATGGAATTCTAAAAGGAGACGGTGAAGGC 237
Query 238 TTTGTTCGTCCATCTATCAAGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTGATCGTCCATCTATCAGGGAGGTAGGTGATATAGTTAATCAAATCGACATCTCTAAA 297
Query 298 GTGTTTCATTGCGATGGTTTAGTGTTGTGCGT-CACAAATGACAACTCAAGTCTCGTGGT 356
|||||||| ||||||||||||||||||||||| | ||| ||||||||| ||| | |||||
Sbjct 298 GTGTTTCAATGCGATGGTTTAGTGTTGTGCGTTC-CAAGTGACAACTCTAGTGTTGTGGT 356
Query 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAACAAGAGAACCTCACGACGAATC 416
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 TTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAGCAAGAGAACCTCACGACGAATC 416
Query 417 AGACATGTTTGCTCTAGGATACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGACATGTTTGCTCTCGGTTACGACAAGGACAAGAACCACAAGATCTTGAGGTTGTACGA 476
Query 477 T 477
|
Sbjct 477 T 477
Score = 584 bits (316), Expect = 5e-166
Identities = 411/456 (90%), Gaps = 10/456 (2%)
Strand=Plus/Plus
Query 480 CGAGATGGCCATTTGGGTGACTACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 539
|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 786 CGAGATGGCCATATGGGTAACCACTAAGATTGAGTCCAATGAGGTGTTGTGGAGCAACTT 845
Query 540 GTTTAAAGTTGATATGGAACCACTCATTAGGTTTGGTTTTCAATATTGTAGAGATGAAGC 599
|||||||||||||||| |||||||| |||||||||| |||||| | |||| |||||||||
Sbjct 846 GTTTAAAGTTGATATGAAACCACTCGTTAGGTTTGGCTTTCAACAATGTAAAGATGAAGC 905
Query 600 TGGCAGtttttttATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATTTAGACAGAAA 659
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct 906 TGGCAGTTTTTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAATCTAGATA-AAA 964
Query 660 ATC-TGATAAAAGGACCAAGAAGAAACGTTGTTACCACACGGCTTATATCGTTGGAGTGA 718
| | || |||||||| || |||| ||||||||||||||| ||||| || |||||| ||
Sbjct 965 AACGTGGTAAAAGGAATAACAAGACACGTTGTTACCACACAGCTTACATTATTGGAGAGA 1024
Query 719 AGGGATACTTGAGAAAAGTGGTTCTTGGAGAAGCTGTGGAGGTCAGAGAAGGCGTGTATC 778
|||||||||||| ||||| ||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1025 AGGGATACTTGAAAAAAGAGGTTCTTGGAGAAGCTGTGGAGGTCCGAAAAGACGTGTATC 1084
Query 779 GTAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 GGAGCGCACTTGTGTGTTCTAGCTCTTATGTTCCAAGTTTAGAGAAGATCAACCAAATTG 1144
Query 839 AAGAGGAAGAGGAAGAGGAAGATATGTGCAAATCAACCAAAATGGTGGACGCAAAAGGGA 898
|||||||||||||||| ||| | | |||||||| ||||||||||||| ||||| ||
Sbjct 1145 AAGAGGAAGAGGAAGAT-AAG-T--G--CAAATCAATCAAAATGGTGGACACAAAAAGGC 1198
Query 899 AA-GATAAGAAGAGGAAGAGGAAGAGCAAAACGTAA 933
|| | |||||||||||||||||||||||||| ||||
Sbjct 1199 AACG-TAAGAAGAGGAAGAGGAAGAGCAAAAGGTAA 1233
> AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6911435-6912604 REVERSE LENGTH=1170
Length=1170
Score = 206 bits (111), Expect = 4e-52
Identities = 195/234 (83%), Gaps = 12/234 (5%)
Strand=Plus/Plus
Query 1 ATGACGATGATGTCTGATCTTTC-CAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCT 59
|||||||||||| ||||||| | | |||||||||||||||||||||| |||| || ||
Sbjct 1 ATGACGATGATGAGTGATCTTACGC-AGGATTTGGTAGAGGAGATACTGTCTAGGGTTCC 59
Query 60 GATAACTTCTCTAGGAGCAGTGAGATCCAC-TCGCAAACAATGGAACGCCTCATCCAAAG 118
|||||||||||||||||||||||||||||| | ||||| ||||||||| | ||||||||
Sbjct 60 GATAACTTCTCTAGGAGCAGTGAGATCCACCT-GCAAAGGATGGAACGCTTTATCCAAAG 118
Query 119 ACCGGCTGT-TGTGTAAAGCAGAACCAAGGGAGCAGTTTCTGAGG-TTCATGGTGATGGA 176
| ||| | | | |||| || |||||||| |||||||||| ||| |||||| || ||||
Sbjct 119 AACGGAT-TCTATGTATAGGAGAACCAAAACAGCAGTTTCT-AGGGTTCATGATGTTGGA 176
Query 177 TCATAGG-TTT-CTTTCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGAC 228
| ||||| ||| || |||||| |||||||| |||||||||||||| | ||||
Sbjct 177 TTATAGGCTTTGCT--CAATGAGGTTCAATCTTCACGGAATCCTCAACGAAGAC 228
Score = 82.4 bits (44), Expect = 7e-15
Identities = 124/160 (78%), Gaps = 15/160 (9%)
Strand=Plus/Plus
Query 490 ATTTGGGTGACTACTAAGATTGAGTCCAATGAGGTGTTGTGG-AGCAACTTGTTTAAAGT 548
|||||||| ||||||||||||||| |||||| |||||| ||| | | ||| || |||||
Sbjct 805 ATTTGGGTTACTACTAAGATTGAGCCCAATGTGGTGTTTTGGAAAC-CCTTCTTAAAAGT 863
Query 549 TGATATGGA-ACCACTCATTAGGTTTGGTTTTCAATATTGTAGAGATGAAGC-TGGCAGt 606
|||||| || | || | | | || || | ||| | | || | ||| || ||||
Sbjct 864 TGATATTGAGA-CAGT-ACTCGG--TGCTCTTC-----T-T-GATTTTCAGCTTGACAGT 912
Query 607 ttttttATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTA 646
|| || ||||||||||||||||||||||||||||||||||
Sbjct 913 TTCTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTA 952
> AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125
Score = 182 bits (98), Expect = 7e-45
Identities = 367/492 (75%), Gaps = 38/492 (8%)
Strand=Plus/Plus
Query 1 ATGACGATGATG-TCTGATCTTTCCAAGGATTTGGTAGAGGAGATACTCTCTAAGGCTCT 59
|||||||||||| | |||||||| |||||||||||||||||||| | | | ||| | |
Sbjct 1 ATGACGATGATGAGC-GATCTTTCGGAGGATTTGGTAGAGGAGATATTGTGT-AGGGTTT 58
Query 60 -GATAACTTCTCTAGGAGCAGTGAGATCCAC-TCGCAAACAATGGAACGCCTCATCCAAA 117
|||||||||||||||||||||||||||||| | ||||| |||| | | | |||||||
Sbjct 59 CGATAACTTCTCTAGGAGCAGTGAGATCCACGT-GCAAAGGATGGTATGTTTTATCCAAA 117
Query 118 GACC-GGCTGT-TGTGTAAAGCAGAACCAAGGGAGCAGTTTCTGAGG-TTCATGGTGATG 174
|| || | | | |||||||||||| ||| | | |||||||| ||| |||||| || |
Sbjct 118 -ACTAGGGT-TCTATGTAAAGCAGAAACAAAGCATCAGTTTCT-AGGGTTCATGAAGAAG 174
Query 175 GATCATAGG-TTT-CTTTCAATGACATTCAATCTCCACGGAATCCTCAAAGGAGACGG-- 230
|| ||| | ||| || |||||| || ||||||| |||| | |||| | ||| ||
Sbjct 175 AATTATAAGCTTTGCT--CAATGAGGTTTGATCTCCATGGAAACTTCAACGAAGAAGGAG 232
Query 231 -TGAAGTCTTTGTTCGTCCATCTATCAAGGAGGT-AGGTGATATAGTTAATCAAATCGAC 288
||||| || | |||||| || ||| || | |||| || || || ||||| | ||
Sbjct 233 GTGAAGAATTCATGAATCCATCAATAAAGAAG-TCAGGTAATTTACTTGATCAACTTGAT 291
Query 289 ATCTCTAAAGTGTTTCATTGCGATGGTTTAGTGTTGTGCGTCAC-AAAT-G-ACAACTCA 345
|| | |||||| ||||| ||||| || ||| |||| ||||| || ||| | | ||| |
Sbjct 292 ATATGTAAAGTTTTTCAATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACT 351
Query 346 AGTCTCGTGGTTTGGAATCCGTATTTGGGTCAAACCAAGTGGATCGAAA--CAAGAGAAC 403
|| |||||||| ||||| || |||| |||||||| || ||||||| ||| ||| | | |
Sbjct 352 AGGCTCGTGGTATGGAACCCTTATTCGGGTCAAATCAGGTGGATC-AAATGCAATA-A-C 408
Query 404 -CTCACGAC-GA-ATCAGACATGTT-TGCTCTAGGATACGACAAGGACAAG-AACCACAA 458
|| || || || | | || | ||| |||| | |||||| |||| || | || |||||
Sbjct 409 TCTTACCACAGATA-C-GA-AGGTTATGCTATCGGATACAACAATAACC-GTAAACACAA 464
Query 459 GATCTTGAGGTT 470
|||||||||||
Sbjct 465 AATCTTGAGGTT 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5