BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479508
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1533 0.0
> AT3G19900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3067 (InterPro:IPR021420);
Has 276 Blast hits to 276 proteins in 83 species: Archae
- 0; Bacteria - 112; Metazoa - 0; Fungi - 2; Plants - 59;
Viruses - 0; Other Eukaryotes - 103 (source: NCBI BLink).
| chr3:6922567-6925066 REVERSE LENGTH=1087
Length=1087
Score = 1533 bits (830), Expect = 0.0
Identities = 946/1002 (94%), Gaps = 8/1002 (1%)
Strand=Plus/Plus
Query 41 ATATCTCTTAGTCCTCCTTCTCTTAATCTCCTCCTCCGCATCGCCGCCGTGCTCTTCCCC 100
||||||||| |||| || ||| ||||||||||||||||||||| |||||||| |||||||
Sbjct 58 ATATCTCTTTGTCCCCCATCTATTAATCTCCTCCTCCGCATCGTCGCCGTGCACTTCCCC 117
Query 101 AGCTCTTGCGGCGGATATGATGAGCATTGTCTCAAGTCATCATCACTGTCAACCATCGGT 160
| ||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 118 ACCTCTTCCGGCGGATATGATGAGCATTGTATCAAGTCATCATCACTGTCAACAATCTGT 177
Query 161 TATACACGAACGTTGCGGTATAGGAACAATTTCTAAGGTTTCTTGTTCGAGATATTGCGG 220
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 178 TATACACGAACGTAGCGGTATAGGAACAATATCTAAGGTTTCTTGTTCGAGATATTGCGG 237
Query 221 TCCGTGTTTCTCTGGAAGACTTGCTTTCTCTCATAGCCTTTGCTTGAAGACTACTACTTG 280
|||||||||||||||| |||| ||||||||||||||||| ||||||||| |||||||
Sbjct 238 TCCGTGTTTCTCTGGACGACTGGCTTTCTCTCATAGCCTCTGCTTGAAG---ACTACTTA 294
Query 281 TGGGAAAACTGCTAGGAGAAGGTTTTCAAGGATTTGCAGTATTGTGGATGATGAGATGAA 340
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||| |||
Sbjct 295 TGGGAAAACTGATAGGAGAAAGTTTTCAAGAATTTGCAGTATTGTGGATGATGAGGGGAA 354
Query 341 TCCAGATAATTCGGATGACGAGGCAAAGGAATCACTCGATGATAAAACTAAAAGGCAAGC 400
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 355 TCTAGATAATTCGGATGACGAGGAAAAGGAATCACTCGATGATAAAACTAAAAGGCAAGC 414
Query 401 GAATGATATGAATCGGGCAAATCTTGAAAGAATGGTTGGGTCAGATGATTCTGCATTTAA 460
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GAATGATATGAATCGGGCTAATCTTGAAAGAATGGTTGGGTCAGATGATTCTGCATTTAA 474
Query 461 CGGCTTAGATCTTGCAACCCTCATCAGACAGAAGTATGGAAAATCTTATGATGTTCAACT 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 CGGCTTAGATCTTGCAACCCTCATCAGACAGAAGTATGGAAAATCTTATGATGTTCAACT 534
Query 521 CATCAAGAAGGAGTTCATGGGGCGGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAG 580
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 535 CATCAAGAAGGAGTTCATGGGGAAGAATCTTCTTGCAATGAATGTCATGTGGAAGTACAG 594
Query 581 AGAACAGAGGTCTTTTCCTCTAACCGAAGAAGAATATATTCTGAGACTTGACGATGTAGC 640
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 595 AGAACAGAGGTCTTTTCCTCTAACCGAAGAAGAATATATACTTAGACTTGACGATGTAGC 654
Query 641 CAACATGTTGAAATGCTGGGGAGCAGTCTCCCATATCCGTAACAGCCTAGCAAAGTCGAA 700
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 655 CAACATGTTGAAATGCTGGGGAGCAGTCTCACATATCCGTAGCAGCCTAGCAAAGTCGAA 714
Query 701 GGAGCGACCCCGGATAGGGAAGGCTGTCAGCATTTTCATAGACATGGATTCGACAGGGGG 760
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GGAGCGACCTCGGATAGGGAAGGCTGTCAGCATTTTCATAGACATGGATTCGACAGGGGG 774
Query 761 ACGAGCAAACGAATGGATTTACAAGTAAAAATCGACCGGTTTACAGCTGCTAAACCAAGA 820
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 775 AAGAGCAAATGAATGGATTTACAAGTAAAAATCGACCGGTTTGCAGCTGCTAAACCAAGA 834
Query 821 AAGCAAAAGGTTTTGTCTCTATGTTTATCGTCATCAATTCATTTTGAAGGCTCTTCTGTG 880
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 835 AATCAAAAGGTTTTGTCTCTACGTTTATCGTCATCAATTCATTTTGAAGGCTCTTCAGTG 894
Query 881 ATGGT-GATTTGCAGAAACAGAGGTTTTTGCTATATTTGATGTCCAAAATCAGGTAGTAT 939
||||| | | |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 895 ATGGTTGCCT-GCAGAAACCGAGGTTTTTGCTATATTTGATGTCCAAA-TCAGGTAGTAT 952
Query 940 ATATGTACATGTGTAT-TTA-GTAGACACAAATTTTTACATGAACTCTCTTTGTAAAATA 997
|||||||||||||| | ||| |||||||||||| ||||| |||||||||| |||||||||
Sbjct 953 ATATGTACATGTGTGTATTAAGTAGACACAAATCTTTACTTGAACTCTCTGTGTAAAATA 1012
Query 998 TCTCCATGTGTTGAAATTGTATCATCTATGTGAATCTTCCTC 1039
|||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1013 TCTCCATGTGTTGAAATTCAATCATCTTTGTGAATCTTCCTC 1054
Score = 73.1 bits (39), Expect = 5e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 AGTTTTAAGAGTTATATTTTTGTTTCCTCCTTCACCGTTCAT 42
||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AGTTTTAAGAGTTTTATTTTTGTTTCCTCCTTCACCGTTCAT 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50937425058
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5