BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479509
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19910.1 | Symbols: | RING/U-box superfamily protein | chr3... 2121 0.0
> AT3G19910.1 | Symbols: | RING/U-box superfamily protein | chr3:6926308-6929567
FORWARD LENGTH=1455
Length=1455
Score = 2121 bits (1148), Expect = 0.0
Identities = 1310/1383 (95%), Gaps = 31/1383 (2%)
Strand=Plus/Plus
Query 1 GATTTCGAAGAAAATTTTGCATAGTTTTCAAAATTTG-AAA--TCAGCT-AAGAGAGAAA 56
||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||
Sbjct 1 GATTTCGAAGAAAATGTTGCATAGTTTTCAAAATTTGAAAATCTCAGCTAAAGAGAGAAA 60
Query 57 GAGAAGCACCATTTTTCTTTCTTCGTCGTGTCATCGTTTTCTCAGATTCCTGAAT-A--A 113
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 61 GAGAAGCACCATTTTTCTTTC-TCGTCGTGTCATCGTTTTCTCAGATTCCTGAATAATCA 119
Query 114 TTCCCTTCCGATACCAAAATCCCCAAACCTCATCGACTCCACCATCTCCCGGATTC-G-- 170
|||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 120 TTCCCTTCCGATTCCAAAATCCCCAAACCTCATCCACTCCTCCATCTCCCGGATTCGGAT 179
Query 171 -----G-AT--T---CATGGAGAACAACAATGG--C-CACGTTGGCAACGTCGTCGTCAC 216
| || | |||||||||| ||||||| | |||||||||||||||||||||||
Sbjct 180 TCCCAGAATCATGCCCATGGAGAACGACAATGGCCCACACGTTGGCAACGTCGTCGTCAC 239
Query 217 CGCCGAGCAAGCCACCAAGATTAACGAGACTGATGGACGGTTGCCGGAGAATCGGCAGAC 276
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGCTGAGCAAGCGACCAAGATTAACGAGACTGATGGACGGTTGCCGGAGAATCGGCAGAC 299
Query 277 CGGTGTTGTATCAGACACCGGAAGTGGTAGCGAGAGAGGAGAGCAAGGGGATGGAGAGAC 336
||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 300 CGGTGTTGTCTCTGACACCGGAAGTGGTAGCGAGAGAGGAGAGCAAGGGGTTGGAGAGTC 359
Query 337 GGCAG-TGCCGGTGCCGGTGTCGGTGGAGGAGAGCGGATCGATTTTGGTGGGAGAGCTAC 395
||||| || | ||| ||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 360 GGCAGTTG-CTGTGGCGGTGCCGGTGGAGGAGAGCGGATCGATTTCGGTGGGAGAGCTAC 418
Query 396 CTGCTCCCCGATCTTCCTCCGCTAGAGTTCCGTTCACTAATCTAAGCCAAATTGATGCGG 455
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 419 CTGCTCCCCGATCTTCCTCTGCTAGAGTTCCGTTTACTAATCTAAGCCAAATTGATGCGG 478
Query 456 ATCTTGCTCTTGCTCGCACACTCCAAGAACAGGAGCGGGCGTATATGATGCTGACCATGA 515
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 479 ATCTTGCTCTTGCTCGCACACTCCAAGAACAGGAGCGGGCGTATATGATGTTGACCATGA 538
Query 516 ACAGTGAAATCAGTGACTATGGGAGCTGGGAAACTGGAAGCTATGTATACGATGAGGATG 575
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATAGTGAAATCAGTGACTATGGGAGCTGGGAAACTGGAAGCTATGTATACGATGAGGATG 598
Query 576 AGTTTGATGACCCCGAGAATGAGGATGAGGATGACGATGAAGACGAATATGAAACAGATG 635
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 599 AGTTTGATGACCCCGAGAATGAGGATGAGGATGATGATGAAGATGAATATGAAACAGATG 658
Query 636 ATGATCCTCAGGAAGATGCGCCCGATGTCGATGTGCACGCTAATGAAGATGATCAAGAAG 695
|||||||||||||||||| || |||||| |||||||||| |||||||||||||||||||
Sbjct 659 ATGATCCTCAGGAAGATGGGCTTGATGTCAATGTGCACGCCAATGAAGATGATCAAGAAG 718
Query 696 GTGACGGCAACTCTGACATCGAAGAAGTTGCTTATTCCGACGATGAGGCCTATGCTAGAG 755
|||||| ||||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct 719 ATGACGGTAACTCTGACATTGAAGAAGTTGCTTATACAGATGATGAGGCCTATGCTAGAG 778
Query 756 CTCTTCAAGAAGCTGAAGAAAGGGATATGGCAGCTAGATTGTCTGCCTTATCTGGGTTAG 815
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 779 CTCTTCAAGAAGCTGAAGAAAGGGATATGGCTGCTAGATTGTCTGCCTTATCTGGGTTAG 838
Query 816 CAAATCGGGTGGTTGAAGATCTAGAGGATGAAAGTCATACTTCTCAGGATGCCTGGGATG 875
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 839 CAAACCGGGTGGTTGAAGATCTAGAGGATGAGAGTCATACTTCTCAGGATGCCTGGGATG 898
Query 876 AGATGGATCCTGATGAGCTTTCTTATGAGGAGTTGCTTGCACTTGGCGACATTGTGGGAA 935
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 AGATGGATCCTGATGAGCTTTCATATGAGGAGTTGCTTGCACTTGGCGACATTGTGGGAA 958
Query 936 CCGAAAGTAGAGGATTGTCTGCTGATACAATTGCATCTTTGCCTTCAAAAAGATATAAAG 995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CCGAAAGTAGAGGATTGTCTGCTGATACAATTGCATCTTTGCCTTCAAAAAGATATAAAG 1018
Query 996 AAGGAGACAATCAGAACGGAACCAATGAGTCATGTGTTATATGTCGTTTAGACTATGAGG 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AAGGAGACAATCAGAACGGAACCAATGAGTCATGTGTTATATGTCGTTTAGACTATGAGG 1078
Query 1056 ATGACGAAGACCTGATACTGCTCCCATGCAAACATTCTTACCACTCGGAGTGCATAAACA 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 ATGACGAAGACCTGATACTGCTCCCATGCAAACATTCTTACCACTCGGAGTGCATAAACA 1138
Query 1116 ACTGGTTGAAGATAAACAAGGTTTGCCCCGTATGCAGTGCAGAAGTTTCAACTTCCACCT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 ACTGGTTGAAGATAAACAAGGTTTGCCCCGTATGCAGTGCAGAAGTTTCAACTTCGACCT 1198
Query 1176 CTGGACAAGGCTGATGAGAGCAAAGCAAGAAAGATTCAGAAAGAATCATAAGCTAAGAAC 1235
|||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1199 CTGGACAAAGCTGATGAG-GCAAAGGAAGAAAGATTCAGAAAGAATCATAAGCTAAGAAC 1257
Query 1236 TTCAAAACCTTAGCTGTCTGTTTGTACACTTTTTATAAACAAAA-A-CATCATCAGATTT 1293
|||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||
Sbjct 1258 TTCAAAACCTTAGCTGCCTGTTTGTACACTTCTTATAAACAAAATAACATCATCAGATTT 1317
Query 1294 CCTTGGATCCTTTGAAAAAATCTCAAAGATTGGAACATTCTCGAGCGTTTTTAGTTTTTG 1353
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1318 CCTTGGATCCTTT-AAAAAATCTCAAAGATTGGAACATTCTCAAGCGTTTTTAGTTTTTG 1376
Query 1354 CAT 1356
|||
Sbjct 1377 CAT 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5