BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479510
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19920.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2089 0.0
> AT3G19920.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G64230.1);
Has 217 Blast hits to 217 proteins in 16 species: Archae -
0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 215; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6929711-6931806
REVERSE LENGTH=1415
Length=1415
Score = 2089 bits (1131), Expect = 0.0
Identities = 1302/1383 (94%), Gaps = 17/1383 (1%)
Strand=Plus/Plus
Query 1 ACAACAAAAAGAGAGAACAATGTCGTCGTCGAGGGAGCTACAATACTTGGAGTACACATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 ACAACAAAAAGAGAGAACAATGTCGTCGTCGAGGGAGCTACAATACTTGGAGTACACATA 76
Query 61 CAGGAACAACCGTCCCACGACGGGTCTCCTCAACTCCATCTTCATGACCACCGTCAACAC 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CAGAAACAACCGTCCCACGACGGGTCTCCTCAACTCCATCTTCATGACCACCGTCAACAC 136
Query 121 GGCCGCTCGTTCTCTCGTCTCCGTCGCCTCCACCGCCTCCACACCGGAGATTCCTTCTAG 180
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 137 GGCCGCTCGTTCTCTCGTCTCCGTCGCTTCCACCGCCTCTACACCAGAGATTCCTTCTAG 196
Query 181 GCGGTGGTCGGCTTCGGACCACCTCAGTTTCGCTTCGGGTCTTCTTACCACGGCGGCGGA 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 197 GCGATGGTCGGCTTCGGACCACCTCAGTTTCGCTTCGGGTCTTCTTACCACGGCTGCGGA 256
Query 241 GAACGCGTTGGTCCCCGCTAAGGCTTCCCCGTCGTCGTTCACGTCATCAACGGCGTTGGT 300
||||||||||||||| |||||||||||| ||||||||| |||||||||||| ||||||||
Sbjct 257 GAACGCGTTGGTCCCGGCTAAGGCTTCCTCGTCGTCGTCCACGTCATCAACTGCGTTGGT 316
Query 301 GAAGTATTCAGGGTCGTCGGATTTGGGTATGATGATTTGCGACGGCGTTGATGAGCCTTC 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GAAGTATTCAGGGTCGTCAGATTTGGGTATGATGATTTGCGACGGCGTTGATGAGCCTTC 376
Query 361 CGTTAACTCTCTCGGTAGAGCACTTTGTCACGCATTAGCGCTCATGAACGAGATTCCAGT 420
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 377 TGTTAACTCTCTCGGTAGAGCTCTTTGTCACGCATTAGCGCTTATGAACGAGATTCCAGT 436
Query 421 AACCTCAAGAAAATACCAATTTGCCATGGGAATGGCTGAGAAGATCATGGAAGACAACGC 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 AACCTCAAGAAAATATCAATTTGCCATGGGAATGGCTGAGAAGATCATGGAAGACAACGC 496
Query 481 CCAGAGCGGCCACGTCGATTTACTCGACGTCAATAGAGCGGCCCTCGCTTCCTCCTTTGC 540
|||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 497 TCAGAGCGGCCACGTGGATTTACTAGACGTCAACAGAGCGGCCCTAGCTTCCTCCTTTGC 556
Query 541 ACGCACCACTGCGCGTTTGCAGGACTGCTTGAAACGATCTCGAACCGCAGACGAGCCCTT 600
||||| |||||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 557 GCGCACTACTGCGCGATTGCAGGACTGCTTGAAACGCTCTCGAACCGCTGACGAGCCCTT 616
Query 601 CGGTGGTTTGCCGCTGCGTGTGGTCAGCGCCCTCCCTCTAGGTGGCTACGTTGCCTCCTA 660
|||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 617 CGGTGGTTTGCCTTTGCGTGTGGTCAGCGCCCTCCCTCTGGGCGGCTACGTTGCCTCCTA 676
Query 661 CGTGAGAGGGTTAACCGCATGTATCAACACGGTCAGGTCCTTAGCAGACATGACTGGGAA 720
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 677 CGTGAGAGGGTTAAGTGCATGTATCAACACCGTCAGGTCCTTAGCAGACATGACTGGGAA 736
Query 721 CTTGTTATCGCAGAGTAGGAGGAGAGAGTCTGCCGTGGTGAGAGCGGGTGGTATCCTAGA 780
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 737 CTTGTTATCGCAGACTAGGAGGAGAGAGTCTGCGGTGGTGAGAGCGGGTGGTATCCAAGA 796
Query 781 AAATGAGGCTGAACTAGCAGTCGAGAAGCTTGCGGAGGAGCTGTTGTGGATGACAGAGAA 840
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 797 AAATGAGGCTGAACTAGCGGTCGAGAAGCTTGCGGAGGAGCTGCTGTGGATGACAGAGAA 856
Query 841 GCTTAGGCGTTACGGTGCGGTGGCAGAAGGGATTAAGCGGTGGAGCTACGCTTCCGGTTT 900
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GCTTAGGCGTTATGGTGCGGTGGCAGAAGGGATTAAGCGGTGGAGCTACGCTTCCGGTTT 916
Query 901 AGCTTCCTTGTCTCTCACGGCTGCTCCCAGGGTTCAAGGCCTCATGGTTAAGATTTCGGC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 AGCTTCCTTGTCTCTCACGGCTGCTCCCAGGGTTCAAGGCCTCATGGTTAAGATTTCGGC 976
Query 961 GCTCTTAATTGGAGAGTTAGCAAGAGACAGCACACAAGTCCCGGGACAAGTGACATTTAG 1020
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 977 GCTCTTAATTGGAGAGTTAGCAAGAGACAGCACACAAGTTCCAGGACAAGTGACATTCAG 1036
Query 1021 GCTCCTTGCAAACTGGCTACCATTGTTTAGTCACGCAAGGAACGGGCTAGCGTTCCCCGT 1080
|||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||
Sbjct 1037 GCTCCTTGCAAACTGGCTCCCACTGTTTAGTCACGCAAGGAACGGGCTTGCGTTTCCCGT 1096
Query 1081 GCTGACGGGATATGAGAGGGTTGAGGTGGAACGAGCAATAGACAAAGCAATCTCGACTTT 1140
|||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1097 ACTGACGGGTTATGAGAGAGTTGAGGTGGAACGAGCCATAGACAAAGCCATCTCGACTTT 1156
Query 1141 GCCTGCGCTTG-ACCAAGAAATCCTACTTACAAACTGGCTGCAAGATTTCTCAGTCTCGG 1199
||||| ||| ||||||||||| |||| || |||||||| |||||||||||||||||||
Sbjct 1157 ACCTGCA-TTGGACCAAGAAATCTTACTCACTAACTGGCTCCAAGATTTCTCAGTCTCGG 1215
Query 1200 CATCTGAGTGGCCCAATCTCCAGCCAGCATATGACCGTTGGTGCCACTCCACTCGCCAAC 1259
| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 CCTCCGAGTGGCCCAATCTTCAGCCAGCATATGACCGTTGGTGCCACTCCACTCGCCAAC 1275
Query 1260 TTTTCATGTAGACGACCAATACAATTTAGTCATGATGGTCATGTTCCAAAGAGAA--CAT 1317
|||||||||||||||||||||| ||| | | ||||||||||||||||| |||
Sbjct 1276 TTTTCATGTAGACGACCAATAC--------CAT-A-G-TCATGTTCCAAAGAGAAAACAT 1324
Query 1318 GGATATGCTTGTCGTACTTTTCTTTGCTACGAGTTTTGATAATACCTTCTGTGTCCACAC 1377
| | || |||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1325 GAAAAT--TTGTTGTACTTTTCTTTGCTACGAGTTTTGATATTACCTTCTGTGTCCACAT 1382
Query 1378 ATT 1380
|||
Sbjct 1383 ATT 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5