BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479513
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19950.1 | Symbols: | RING/U-box superfamily protein | chr3... 1958 0.0
> AT3G19950.1 | Symbols: | RING/U-box superfamily protein | chr3:6942769-6945224
FORWARD LENGTH=1313
Length=1313
Score = 1958 bits (1060), Expect = 0.0
Identities = 1237/1319 (94%), Gaps = 26/1319 (2%)
Strand=Plus/Plus
Query 1 GACGGTTCTTTTCTTCCTTCGTCCTCTCG----TTTTGTTTCGTCGTCTCTCTCTCGCGC 56
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 GACGGTTCTTTTCTTCCTTCGTCCTCTCGTTTTTTTTGTTTCGTCGTCTCTCTCTCGCGC 60
Query 57 TCTGAAAATTTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCA 116
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGAAAAATTCGCAGAATCCGTCATGTCTTCCGGCGTAAATTCAACTGGCTCCGCCGCA 120
Query 117 GCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCGCACAGTCACAATC 176
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GCAGCACCGGAGGTTGACAAGATGTTCTTCTGCTACCAGTGCAATCAAACAGTCACAATC 180
Query 177 TCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAATTTCCTCATCCGCTGATCCTTTTTGTCCAATTTGTAACCAAGGGTTTCTTGAAGAA 240
Query 237 TACGAAGACCCTAACCCTAATCCAA-CCCTCAATTTCAACCCTAACTCTGT-TGATTCCC 294
|||||||||||||||||||||| || ||||||||||||||||||||||| | |||||||
Sbjct 241 TACGAAGACCCTAACCCTAATC-AATCCCTCAATTTCAACCCTAACTCT-TCTGATTCCT 298
Query 295 TTTTCCCCATGGCTGATCCTTTCTCCACCTTGCTCCCTCTCTTATTCGGCTCTTCCGCTG 354
||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 299 TTTTCCCCATGGCCGATCCTTTCTCCACCTTGCTCCCGCTCATATTCGGCTCTTCCGCTG 358
Query 355 CCTCTCCTTCCGGCATGGACTTGATGAGCTCGAGCTTATTCGCTCCGTCGATGCAACCAC 414
|| ||||||||||||||||||| ||||||| | ||||| ||| |||||||||||||
Sbjct 359 CCGCTCCTTCCGGCATGGACTTCATGAGCT-----T-ATTCGGTCCTTCGATGCAACCAC 412
Query 415 AGGCTCGTTCCACTCAGCAGAATCCCCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTC 474
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 413 AGGCTCGTTCCACTCAGCAGAATCCTCAGTCTGACGCGTTTGATCCGTTTACGTTTCTTC 472
Query 475 AGAATCATCTCCAGAATCTGCGATCTAGCGGTACGCACGTTCAGTTCGTGATCGAGAATC 534
||||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||
Sbjct 473 AGAATCATCTCCAGACTTTGCGATCTAGCGGTACGCACTTTGAGTTCGTGATCGAGAATC 532
Query 535 ATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGACTACTTCTTTGGTCCAG 594
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 533 ATCCTTCGGATCCAGGTAATCGTATGCCTGGGAATTTCGGTGATTACTTCTTTGGTCCAG 592
Query 595 GTCTTGAGCAGTTGATTCAGCAGCTTGCTGAGAATGATCCTAATCGTTACGGAACTCCTC 654
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 593 GTCTTGAGCAGTTGATTCAGCAACTAGCTGAGAATGATCCTAATCGTTACGGAACTCCTC 652
Query 655 CTGCTTCCAAATCCGCCATTGATGGGCTTCCTACTGTTAAGGTAACCAAGGATATGTTGA 714
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 653 CTGCTTCCAAATCCGCCATTGATGCTCTTCCTACTGTTAAGGTAACGAAGGATATGTTGA 712
Query 715 AATCCGAGATGAACCAGTGTGCCGTATGTATGGACGAGTTTGAGGATGGTAGCGATGTTA 774
|||| ||||||||||| || || || |||||||| |||||||||||||||||||||||||
Sbjct 713 AATCGGAGATGAACCAATGCGCGGTGTGTATGGATGAGTTTGAGGATGGTAGCGATGTTA 772
Query 775 AGCAGATGCCTTGTAAGCACGTCTTTCATCAGGATTGCTTGCTCCCATGGCTGCAATTGC 834
|||||||||||||||||||||||||||||||||| || |||||||| |||||| | ||||
Sbjct 773 AGCAGATGCCTTGTAAGCACGTCTTTCATCAGGACTGTTTGCTCCCTTGGCTGGAGTTGC 832
Query 835 ATAACTCATGTCCGGTTTGTCGATTCGAGTTGCCTACTGATGATCCTGAATATGAGAACA 894
|||| || ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 833 ATAATTCGTGTCCTGTTTGTCGATTCGAGTTGCCTACGGATGATCCTGATTATGAGAACA 892
Query 895 GGACTCAAGGAATTCAGGCGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGC 954
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GGAGTCAAGGAAGTCAGGGGAGTGGTGATGGACAAGGATCGGTTGAGGGTCAGCAGACGC 952
Query 955 CGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCTGGCT 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 953 CGAGGTTTAGTATACAACTTCCTTGGCCGTTCAGGAGACAAGATGGCTCTGGTTCAGGCT 1012
Query 1015 CGGGAGCACCTGGTGCCGGTGGAGGTAATCTTGAGACCAGGGGGGAAGATTTGGATTAAG 1074
|||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1013 CGGGAGCACCTGGTACTGGTGGAGGTAATCTTGAGACCAGGGGTGAAGATTTGGATTGAG 1072
Query 1075 AATGTGTTGGCCAGAGTCATTGCTTGGAAACTGGATCAGAAGGCTATC-A-C--AAGTTC 1130
|||||||||||||| ||||||||||||||||||||||||||| |||| | | ||||||
Sbjct 1073 AATGTGTTGGCCAG--TCATTGCTTGGAAACTGGATCAGAAGGATATCTATCCCAAGTTC 1130
Query 1131 TCCAACAACaaa--aaaaaaCAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTAC 1188
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TCCAACAAAAAATGAAAAAACAGTTTTATTAGGGAAACAAAAGTGACATTGAGGTCTTAC 1190
Query 1189 CATATTTTGTACATTTGAAAAGTGTTCTTTTTT-CGTTGTTATTTTGGGAT-ATATAACG 1246
|||||||||||||||| |||| ||| |||||| ||||||||||||||||| ||||||||
Sbjct 1191 CATATTTTGTACATTTAAAAAAAGTTATTTTTTTCGTTGTTATTTTGGGATTATATAACG 1250
Query 1247 AATGTGAGAGTTTTCAAAAATTGCAA-TTCTTCATTTGAGTGTTGTTTATTTTTCTCAT 1304
||||||| |||||| |||||| |||| || |||| ||||||||||||||||||||||||
Sbjct 1251 AATGTGAAAGTTTTTAAAAATCGCAAATT-TTCAATTGAGTGTTGTTTATTTTTCTCAT 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5