BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479517
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19990.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 2091 0.0
> AT3G19990.1 | Symbols: | unknown protein; INVOLVED IN: biological_process
unknown; LOCATED IN: chloroplast stroma, chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; Has 118 Blast hits to 118 proteins in 41
species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0;
Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI
BLink). | chr3:6965647-6967248 FORWARD LENGTH=1448
Length=1448
Score = 2091 bits (1132), Expect = 0.0
Identities = 1240/1294 (96%), Gaps = 0/1294 (0%)
Strand=Plus/Plus
Query 2 AGACAAAATGGGTTCATCATCATCTCCATCCCCAAACGACACCATACTTGAATCAGCCCG 61
||||||||||||||||||||||||||||||||| |||||| || |||| |||||||||||
Sbjct 18 AGACAAAATGGGTTCATCATCATCTCCATCCCCGAACGACGCCGTACTGGAATCAGCCCG 77
Query 62 GCCCTTTCTCCGAGGAGAGCTCGAGAATATCGACCCCAAACTCCCGTCGTTAATCGCCGT 121
|| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 78 ACCTTTTCTCCGAGGAGAGCTTGAAAAGATCGACCCCAAACTCCCGTCGTTAATCGCCGT 137
Query 122 CCTCAAAAGCGTCGGTGCCGGCGAGTGTTGGCACAAACACGGGAGCTTCCTAGATCACTT 181
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 138 CCTCAAAAGCGTCGGTGCCGGCGAGTGTTGGCACAAACACGGAAGCTTCCTAGATCACTT 197
Query 182 GATCGATATCTACAAGATCCTCAAGCTATGGAAAGCTCCTGAATCCGTCTGCCTCTGTGG 241
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 198 AATCGATATCTACAAGATCCTCAAGCTATGGAAAGCTCCTGAATCCGTCTGTCTCTGTGG 257
Query 242 TCTATTTCACTCTGCTTACTCCAATTCTTATGTCAATTTAGCCATTTTCGATCCTTCCAC 301
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 258 TCTATTCCACTCTGCTTACTCCAATTCCTATGTCAATTTAGCTATTTTCGATCCTTCCAC 317
Query 302 TGGTCGTGACGTTGTTCGTGATCATGTCGGTGAAGCTGCTGAGTCGTTGATCCATCTCTT 361
|||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 318 TGGTCGTGACGTCGTCCGTGATCACGTCGGTGAAGCTGCCGAGTCGTTGATCCATCTCTT 377
Query 362 TTGCGTTGTACCGAGACAAACTCTGATTCACGACGATCTATTATTCAAGTACTCTGATCG 421
|||||||||||||||||||||||||||||||| || || || || |||||||||||| |
Sbjct 378 CTGCGTTGTACCGAGACAAACTCTGATTCACGATGAGCTTTTGTTTAAGTACTCTGATTG 437
Query 422 TGAGCTCGTTGAGCATCTTGATTGTTCCGAGGTTTCGTTGAGGAACGCCAAGGAGAAAGG 481
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 438 TGAGCTCGTTGAGCATCTTGATTGTTCTGAGGTTTCGTTGAGGAACGCAAAGGAGAAAGG 497
Query 482 GGTCTTTGATGGAGATGAAGAGTGGAGGAAGAAGATTAATGGTTTGGTTCCTGAGAATGG 541
| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 498 GATTTTTGATGGAGATGAAGAGTGGAGGAAGAAGATTAATGCTTTGGTTCCTGAGAACGG 557
Query 542 TGTTGTTGTGAAGCATATCAAGACAGGTGAAGAAATCGTTGTTTCGAGGAGAGTTGTTGG 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TGTTGTTGTGAAGCATATCAAGACAGGTGAAGAAATCGTTGTTTCGAGGAGAGTTGTTGG 617
Query 602 TGTTTTCTTGCTAATGACAATGGCGGATTTTAGTGATCAGCTTTTTGGGTTTCAAGATGA 661
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 618 TGTTTTCTTGTTAATGACAATGGCGGATTTTAGTGATCAGCTTTTTGGGTTCCAAGATGA 677
Query 662 GCTGTTCTGTAATCATGATGGGAGACTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTG 721
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GTTGTTCTGTAATCATGATGGGAGACTTGAGTTTAGAGGGAACAACGTGACTGCGTTGTG 737
Query 722 GCCTGGGAATGGGAAACCTGGACTGTGGTTGAATTCGAATTCGAGGATGGGAGCGATTTA 781
||||||||||||||| |||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 738 GCCTGGGAATGGGAAGCCTGGACTGTGGATGAATTCTAATTCGAGAATGGGAGCGATTTA 797
Query 782 TAGTTTGATTGTGAGAGAAGAGGAGATTTTGATGGAGGAGAGGAGAAGGGCTTTTGGTTC 841
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 798 TAGTTTGATTGTGAGAGAAGAGGAGATTTTGATGGAAGAGAGGAGAAGGGCTTTTGGTTC 857
Query 842 TGGGTTTGAAGTGAGGAAGGAGAGAGATGAGGATATAGAGCTCGTTGTGCCTCCAGTTTT 901
||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||
Sbjct 858 TGGGTTTGAAGTGAGGAAGGAAAGAGATGAGGATATAGATCTTGTCGTGCCTCCAGTTTT 917
Query 902 CAGCTTCTGCACCAAGGTATTGGATGCAAAAGAGCAGATAGAAGCAAGGGAGATGTACTG 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 CAGCTTCTGCACCAAGGTATTGGATGCAAAAGAGCAGATAGAAGCAAGGGAGATGTACTG 977
Query 962 GGAAGTTGTGAGCAGTGACACAAGCAAAGAAGGGTACTTGGAGAGAGCAGAGGAGAGATT 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GGAAGTTGTGAGCAGTGACACAAGCAAAGAAGGGTACTTGGAGAGAGCAGAGGAGAGATT 1037
Query 1022 GTTGGGGTGTATTGAGAAGAACCCATTCGTGGGAGAGCCACATGTGTTGTTGAGCCAAGT 1081
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1038 GTTGGGTTGTATTGAGAAGAACCCATTTGTGGGAGAGCCACATGTGTTGTTGAGTCAAGT 1097
Query 1082 GTACTTGGgaaagaagagattcaaagaagcagagagagaagcagagaaagGGCTTCTTCT 1141
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1098 GTACTTGGGAAAGAAGAGATTCAAAGAAGCAGAGAGAGAGGCAGAGAAAGGGCTTCTTCT 1157
Query 1142 GCTTTTGCAATGGGGAAGTCCTTGGGACAAGAGAATGTCATGGCAAGGTTGGATTGCTTG 1201
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1158 GCTCTTGCAATGGGGAAGTCCTTGGGACAAGAGAATGTCATGGGAAGGTTGGATTGCTTG 1217
Query 1202 GGTTAGGGTGCTTCTCATGAAATCACAGGATCAATCTTGGCCTGACGTTTCTTGGGGTAT 1261
||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1218 GGTTAGGGTTCTTCTCATGAAGTCACAGGATCAATCTTGGCCTGATGTTTCTTGGGGTAT 1277
Query 1262 CTTGAACTTGGGTCTTGTGCGCTAATAAGATTGT 1295
||||||||||||||| ||||||||||||||||||
Sbjct 1278 CTTGAACTTGGGTCTCGTGCGCTAATAAGATTGT 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5