BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479518
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20000.1 | Symbols: TOM40 | translocase of the outer mitocho... 1943 0.0
> AT3G20000.1 | Symbols: TOM40 | translocase of the outer mitochondrial
membrane 40 | chr3:6967582-6970566 FORWARD LENGTH=1352
Length=1352
Score = 1943 bits (1052), Expect = 0.0
Identities = 1250/1340 (93%), Gaps = 36/1340 (3%)
Strand=Plus/Plus
Query 1 AAGCTGAAGAAAACCCTTACTTCGCTTACTCTTCTACCATTTGCTTCCCA---------T 51
||||||||||||||||||| ||| ||| ||||| | |||||| | ||||| |
Sbjct 1 AAGCTGAAGAAAACCCTTAATTCTCTTTCTCTTGTTCCATTT-CGTCCCATTTTGTTCTT 59
Query 52 T-T--TGTCGCCGTAAAGGATATTCAAAAGCGGTAGCGGCGGCGATGGCGGATATTTTCC 108
| | ||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct 60 TCTACTGTCGCCGTAAAGGATATTCAAAAGCGGTAGAGGCGGCGATGGCGGATCTTTTAC 119
Query 109 CACCTCTCACGGCGGCACAAGTCGATGCAAAGATTAAAGTCGATGAGAAAGTCGATTACT 168
||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 120 CACCTCTTACGGCGGCACAAGTCGATGCTAAGACTAAAGTCGATGAGAAAGTCGATTACT 179
Query 169 CCAACCTCCCTTGTCCTGTTCCCTATGAGGAACTCCACCGAGAAGCTCTCATGTCTTTAA 228
| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 CGAACCTCCCTTCTCCTGTTCCCTATGAGGAACTCCACCGTGAAGCTCTCATGTCTTTAA 239
Query 229 GGTCGGACAATTTTGAGGGTTTACGCTTTGACTTTACCAGGGCGTTGAATCAGAAGTTTT 288
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 AGTCGGACAATTTTGAGGGTTTACGCTTCGACTTTACCAGGGCGTTGAATCAGAAGTTTT 299
Query 289 CTCTCAGTCATAGCGTGATGATGGGGCCAACCGAAATTCCTTCCCAGTCATCTG-AA--A 345
||||||||||||| || |||||||||||||||||| ||||| | |||||| ||| || |
Sbjct 300 CTCTCAGTCATAGTGTAATGATGGGGCCAACCGAAGTTCCTGCTCAGTCACCTGAAACTA 359
Query 346 CTATCAAAATCCCAACAGCCCATTATGAGTTTGGTGCCAATTATTATGACCCAAAGTTGT 405
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTATCAAAATTCCAACAGCCCATTATGAGTTTGGTGCCAATTATTATGACCCAAAGTTGC 419
Query 406 TGCTCATCGGAAGGGTAATGACTGATGGTAGACTAAGTGCGAGAGTGAAAGCAGATTTAA 465
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 420 TGCTCATCGGAAGGGTAATGACTGATGGTAGACTAAATGCGAGACTGAAAGCAGATTTAA 479
Query 466 CTGAGAAGTTAGTTGTGAAGGCGAATGCTCAGATAACAAATGAGCAACATCA-GTCACAA 524
|||| ||||||||||||||||||||||||| ||||||||||||| ||||| | |||||||
Sbjct 480 CTGATAAGTTAGTTGTGAAGGCGAATGCTCTGATAACAAATGAGGAACAT-ATGTCACAA 538
Query 525 GCAATGTTCAACTTTGATTACATGGGATCAGACTACAGAGCTCAGCTTCAAGTTGGACAG 584
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 539 GCAATGTTCAACTTTGATTACATGGGATCAGACTACAGAGCTCAGCTTCAACTTGGACAG 598
Query 585 AGTGCCCTAATTGGAGCAACTTATATCCAGAGTGTTACAAACCATTTATCTTTGGGTGGT 644
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 599 AGTGCCCTAATTGGAGCAACTTATATCCAGAGTGTTACAAACCATTTATCCTTGGGTGGT 658
Query 645 GAAGTTTTCTGGGCTGGTGTGCCTCGAAAGTCGGGAATAGGCTATGCTGCTAGATACGAG 704
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 GAAATTTTCTGGGCTGGTGTGCCTCGGAAGTCGGGAATAGGCTATGCTGCTAGATACGAG 718
Query 705 ACGGATAAAATGGTTGCTTCTGCACAAGTTGCTAGCACAGGTGCTGTTGTTATGAACTAT 764
|| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 719 ACAGATAAAATGGTTGCTTCTGGTCAAGTTGCTAGCACGGGTGCTGTTGTTATGAACTAT 778
Query 765 GTTCAGAAGATTTCAGATAAGGTTTCACTTGCCACTGACTTCATGTACAACTACTTTTCA 824
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 779 GTTCAGAAGATTTCAGATAAGGTGTCACTTGCCACTGATTTCATGTACAACTACTTTTCA 838
Query 825 AGAGATGTAACAGCTAGTGTGGGTTACGACTATATTCTTAGACAGGCTCGTGTGCGGGGA 884
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 839 AGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAGGCTCGTGTGCGGGGT 898
Query 885 AAGATCGATTCCAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTC 944
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTC 958
Query 945 AATTTTCTTCTTTCTGCAGAGCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGA 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AATTTTCTTCTTTCTGCAGAGCTGGATCATAAGAAGAAGGACTACAAGTTTGGTTTCGGA 1018
Query 1005 TTAACAGTTGGTTAAAAAGACTGCATAAAAACCGGCACACAATAAGCCTGGCGCACAGAG 1064
||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1019 TTAACAGTTGGTTAAAA-GACCGAATAAAAACCGGCACACAATAAGCCTGGCGCACAGAG 1077
Query 1065 CAGATTGCAGCAGTAGTGGTTTCAGCTGC-AGGATTTCGGTTAAAATTTATTCTATTTCA 1123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1078 CAGATTGCAGCAGTAGTGGTTTCAGCTGCGAGGATTTCGGTTAAAATTTATTCTATTTCA 1137
Query 1124 GTTTAGGCTTTTTGGTGAAGTTGGGAAGATGAACAA-AACGATGTTGTGTTGTTATTTGA 1182
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1138 GTTTAGGCTTTTTGGTGAAGTTGGGAAGATAAACGGTAACGATGTTGTGTTGTTATTTGA 1197
Query 1183 GGTTTAGGATTTGTTTTCCAAGAAGCATTTTATaaaaaaaaaGAAGAAGCAAATG---TT 1239
|||||||||||||||| ||||||| |||||||||||| || ||||||||||||| ||
Sbjct 1198 GGTTTAGGATTTGTTT-CCAAGAACCATTTTATAAAAGAA--GAAGAAGCAAATGAGGTT 1254
Query 1240 TT------ACTTCCTTGCTTTAAGACCTCGTGAACTTCC-AGAGAGGTGTATCATTTCAT 1292
|| ||||||||||| ||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1255 TTTGTTTTACTTCCTTGCTCTAAGATCTCGTGAACTTCCGAGAGAGGTGTATCATTTCAT 1314
Query 1293 TTCCTT-CCAATTaaaaaaa 1311
|||||| ||| | |||||||
Sbjct 1315 TTCCTTGCCA-TAAAAAAAA 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5