BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479519
Length=3385
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / heli... 5343 0.0
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / heli... 1779 0.0
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / heli... 215 3e-54
> AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976595 FORWARD LENGTH=3399
Length=3399
Score = 5343 bits (2893), Expect = 0.0
Identities = 3239/3405 (95%), Gaps = 27/3405 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCTGCTATTGAAATTAGTTCAGGTAGTGATAGTGATGACGAACTACCA---CAG 57
||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1 ATGGATTCTGCTATTGAAATTAGTTCAGGTAGTGATAGTGATGACGAAGTACCACCGCAG 60
Query 58 CCCATTAGGCCACAAATTCGAACCAGGACAGATCCCATATGGCTAGGTATAGAGA--TTG 115
|| || ||||||||| ||||||||||| ||||||| ||||||| | | |||| ||
Sbjct 61 CCTGTTTGGCCACAAACTCGAACCAGGATGGATCCCACATGGCTAAGCA-GGAGACCTT- 118
Query 116 TGCCTACAGTGGATAGCCATGCTAGAGCTGAACATACATATCAGGCTTCTCGCAATGGTG 175
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 119 TGCCTACAGTGGATAGCCATGCTAGAGCTGAACATACAAATCAGGCTCCTCCCAATGGTG 178
Query 176 CCTCGAATGATACTTCTCGGCCTGGAGTCTCTAAGCCTTTTACAGGGAATGGGAACACTG 235
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 179 CCTCGAGTGATACTTCTCGGCCTGGAGTCTCTAAGCCTTTCACAGGGAATGGGAACACTG 238
Query 236 TAAACTCGAGAATTTCCAGTGGATCTGGTGCTGATTATGAGAGACTATCGTCTGAGCAAG 295
||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 239 TAAACTCGAGAATTTCCAGTGGATCTGGTGCTGATTATGTGAGACTGTCTTCTGAGCAAG 298
Query 296 CTCTGAAAAGAACTCTTCCACCCTCCTTTAGTTCGCCTCCCTTTCCTTCCAGAAGTGGCG 355
||||||||||||||||||||||||| |||| ||| |||||| ||||| |||||||||||
Sbjct 299 CTCTGAAAAGAACTCTTCCACCCTCTTTTAATTCCCCTCCCCTTCCTGCCAGAAGTGGCA 358
Query 356 CTAACAATATAAGTAATGCTAGTGGGAGTCGCGTTGGTGCGGATTATGAGAGACTATCGT 415
||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| || ||
Sbjct 359 CTAACAATATAAGTAATGCTAGTGGAAGTCGTGTTGGTGTGGATTATGAGAGACCATTGT 418
Query 416 CTCAGCAAGCTCCGAAAAGAACTCTTCCGCCCTCTTTTAATCCCCCTCCCCTTCCTTCCA 475
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 419 CTCAGCAAGCTCTGAAAAGAACTCTTCCACCCTCTTTTAATCCCCCTCCCCTTCCTTCCA 478
Query 476 GAAGTGGCACTAACAATATAAGTAATGCCAGTGGGAGTCGCTTTGGTGCGGATTATAGTC 535
|||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||
Sbjct 479 GAAGTGGCACAAACAATATACGTAATGCTGGTGGGAGTCGCTTTGGTGCCGATTATAGTC 538
Query 536 GTCCAGCTGTGTCAGCTGTAGGCAACAAGAGTACCTTTGGTGATCATTATAGTGGAGCCC 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATCCAGCTGTGTCAGCTGTAGGCAACAAGAGTACCTTTGGTGATCATTATAGTGGAGCCC 598
Query 596 ATGCTGAGATAGGAATTCAACGTGGCATGAATGGGGTTAGGATCCTGCCTCCATCTCTGA 655
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 599 ATGCTGAGATAGGAATTCAACGTGGCGTGAATGGGGTTAGGATCCTGCCTCCATCTCTGA 658
Query 656 CGCATGGAACATCTGCTTCTGTTTTGCATCATGCTGGTTCAAGTGATCCAATGCACAGGT 715
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 659 CGCATGGAACATCTGCTTCTGTTTTGCATCATGCTGGTTCGAGTGATCCAATGCACAGGT 718
Query 716 TTGGTATTGGTGAAGATAGGAATCCTGATAACGATGAGAGGTTGGTTTATCAGGCTGCAC 775
||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 719 TTGGTGGTGGTGAAGATAGGAATCCTGATAACGATGAAAGGCTGGTTTATCAGGCTGCAC 778
Query 776 TACAGGATTTGAATCAACCCATTACCGAAAGCGATCTACCTCCTGGTGTTCTTTCAGTTC 835
|||||| ||||||||||||||| || ||||| ||||||||||||||| |||||||||||
Sbjct 779 TACAGGTTTTGAATCAACCCATGACTGAAAGTGATCTACCTCCTGGTACTCTTTCAGTTC 838
Query 836 CTCTTATGAGGCATCAGAAAATTGCATTGGCATGGATGTTTCAGAAGGAAACAAGAAGTT 895
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 839 CTCTTATGAGGCATCAGAAAATTGCGTTGGCATGGATGTTTCAGAAGGAAACAAGTAGTT 898
Query 896 TTAACTGTGCGGGAGGAATACTAGCAGATGATCAGGGACTTGGTAAGACGGTCTCGACGA 955
| |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCAACTGTCCAGGAGGGATACTAGCAGATGATCAGGGACTTGGTAAGACGGTCTCGACGA 958
Query 956 TTGCTCTTATCCTAAAGCAAAAGATTGTGTCACTACTGAAGTCTGCAAA-TTCATGCAAG 1014
||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||||||
Sbjct 959 TTGCTCTTATCCTAAAGCAAAAGATTGTGTCACAACTGAAGTCCG-AAAGTTCATGCAAG 1017
Query 1015 CAAGAAACTGAGGCATTAGTCCTGGATGCTGATGATGAGTCAGACAATGCAAAGCATGAA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAAGAAACTGAGGCATTAGTCCTGGATGCTGATGATGAGTCAGACAATGCAAAGCATGAA 1077
Query 1075 AGTGGTAGTCATGTAAAACCAGAGCTCAAGGTTTCAAGCAACAGTGAGACCTCGGTTCTG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGTGGTAGTCATGTAAAACCAGAGCTCAAGGTTTCAAGCAACAGTGAGACCTCGGTTCTG 1137
Query 1135 AGTGCTA-GTGGTAATGATGAGAATGACAGTTCAGATATGGAGAAAGCCAAAGATGAAGA 1193
||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1138 AGTGC-ATGTGGTAATGATGAGAATGACAGTTCAGATATGGAGAAAGCCGAAGATGAAGA 1196
Query 1194 AGCAAATTCTTCAACACGAGCATTTAAGTGGAAGAGACCAGCTGCTGGTACATTAATTGT 1253
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1197 AGCTAATTCTTCAACACGAGCATTTCAGTGGAAGAGACCAGCTGCTGGTACATTAATTGT 1256
Query 1254 TTGCCCAGCGAGTGTTGTACGGCAGTGGGCAAGAGAGCTTGATGAGAAGGTTTCTGAAGA 1313
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 TTGCCCAGCGAGTGTTGTAAGGCAGTGGGCAAGAGAGCTTGATGAGAAGGTTTCTGAAGA 1316
Query 1314 ATGGAAACTTTCTGTGTTAGTCTACCATGGTAGTAATAGGACCAAAGATCCTAATGAATT 1373
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ATCCAAACTTTCTGTGTTAGTCTACCATGGTAGTAATAGGACCAAAGATCCTAATGAATT 1376
Query 1374 AGCAGAATACGATGTGGTTGTGACAACTTACGCTATTGTTACTAATGAAGCTCCCAAAAA 1433
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1377 AGCAGAATACGATGTGGTTGTGACAACGTACGCTATTGTTACTAATGAAGCTCCCAACAA 1436
Query 1434 ATTCTTGGTGGATGAGGATGAGAACGATGAAAAAAGTACTGACAAATATGGTCTTGCCTC 1493
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1437 ATTCTTGGTGGATGAGGATGAGAACGATGAAAAAAATACTGACAGATATGGTCTTGCCTC 1496
Query 1494 TGGCTTCTCCAACAATAAGAAGCGGAAAGTCGCGGTGGGTGCCAGTAAGAAGAGTaaaaa 1553
||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 1497 TGGCTTCTCCAACAATAAGAAACGGAAAGTCGTGGTGGGTGCTAGTAAGAAGAGTAAAAG 1556
Query 1554 aaGAGGTAGAAAAAGCACTGACAATTCTTCTTCTGAGCCCGATTGTGGTGCTCTAGGAAA 1613
||||||||||||||||||| || || ||||||||||||| ||||||||| ||||||||||
Sbjct 1557 AAGAGGTAGAAAAAGCACTAACGATACTTCTTCTGAGCCTGATTGTGGTCCTCTAGGAAA 1616
Query 1614 AGTTGGGTGGTTCAGAATAGTACTAGATGAAGCTCAGACAATAAAGAACCATAGAACACA 1673
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1617 GGTTGGGTGGTTCAGAATAGTACTAGATGAAGCTCAGACAATTAAGAACTATAGAACACA 1676
Query 1674 AGTGGCAAGATCCTGTTGCACTCTTCGAGCCAAAAGGAGGTGGTGCTTGTCTGGAACACC 1733
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 AATGGCAAGATCATGTTGCACTCTTCGAGCCAAAAGGAGGTGGTGCTTGTCTGGAACACC 1736
Query 1734 AATACAAAATACGATTGATGATTTATATAGCTATTTCAGGTTTCTTAGATATGATCCATA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 AATACAAAATACGATTGATGATTTATATAGCTATTTCAGGTTTCTTAGATATGATCCATA 1796
Query 1794 TGCGGCGTACAAGTCATTTTACAGTACAATCAAGGTTCCAATTTCCAGAAATTCTTGTCA 1853
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1797 TGCGGTGTACAAGTCATTTTACAGTACAATCAAGGTTCCAATTTCCAGAAATTCTTGTCA 1856
Query 1854 AGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTGCGCCGCACCAAAGGAAC 1913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 AGGTTACAAGAAGCTTCAAGCTGTTCTAAGGGCTATAATGCTGCGCCGCACCAAAGGAAC 1916
Query 1914 ATTACTTGATGGGAAACCCATTATTAATCTACCTCCaaaaaaaGTTAATTTGAG-CACGG 1972
||| ||||||||||||||||| ||||||||||||||||| ||| |||||||| || ||
Sbjct 1917 ATTGCTTGATGGGAAACCCATAATTAATCTACCTCCAAAGGTAGTAAATTTGAGCCA-GG 1975
Query 1973 TAGATTTTTCAGTGGAAGAGCGCTCTTTCTACAGGAAGCTTGAAGCGGATTCACGTTCAC 2032
|||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1976 TAGACTTTTCAGTGGCTGAGCGCTCTTTCTACAAGAAGCTTGAAGCTGATTCACGTTCAC 2035
Query 2033 AGTTCAAGGCCTATGCTGATGCGGGAACTTTGAGTCAAAACTACGCAAATATTCTTCTGA 2092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 AGTTCAAGGCCTATGCTGATGCGGGAACTTTGAGTCAAAACTACGCAAATATTCTTCTGT 2095
Query 2093 TGCTTTTGCGACTCCGCCAAGCTTGTGACCACCCACAACTTGTT-AAAGTATATAACTCA 2151
||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 2096 TGCTTTTGCGACTACGCCAAGCTTGTGACCACCCACAACTTGTTAAAAG-ATATAACTCA 2154
Query 2152 GATCCTGTTGGAAAAGAATCAGAAGCAGCAGTTAGAAGACTCCCTAGGGAGGCTCGAAGC 2211
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2155 GATCCTGTTGGAAAAGTATCAGAAGCAGCAGTTAGAAGACTCCCTAGGGAGGCTCGAAGC 2214
Query 2212 AGACTGATCAATCGCTTAGAGTTATCATCTGCCATCTGCTATGAGTGCAATGAGCCACCA 2271
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2215 AGACTGATCAATCGCTTAGAGTCATCATCTGCCATCTGCTATGAGTGCAATGAGCCACCA 2274
Query 2272 GAAAAACCTGTTGTTAAGTTGTGTGGCCATGTATTTTGCTATGAATGTGTTTTAGAATAC 2331
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2275 GAAAAACCTGTTGTTACGTTGTGTGGCCATATATTTTGCTATGAATGTGTTTTAGAATAC 2334
Query 2332 ATAACTGGGGATGAGAACACGTGCCCTGTACCGAGATGCAAACAACAGCTTGCGCGTGAT 2391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2335 ATAACTGGGGATGAGAACACGTGCCCTGTACCGAGATGCAAACAACAGCTTGCGCGTGAT 2394
Query 2392 GTTGTTTTCTCTGAATCTTCGCTTAGAAATTGCATTTCTGATGATTTGGGCTGTAGTTCC 2451
|||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct 2395 GTTGTTTTCTCTGAATCTTCTCTTAGAAATTGCACTTCTGATGATTCGGGCTGTAGTTCC 2454
Query 2452 TCGCATGATAAAGGTCTCGATAGATCGGTTTTTGAAAAAAGCGAGTTTTGTTCATCAAAA 2511
|| |||||||| ||||| ||||||||||| ||| ||||||| || |||||||||||||||
Sbjct 2455 TCTCATGATAATGGTCTTGATAGATCGGTATTTCAAAAAAGAGACTTTTGTTCATCAAAA 2514
Query 2512 ATCAAAGCTGTCCTCGATATCCTGCAGTCGCTTTCCAAACAAGACACTCCAAACTCAGCT 2571
|| ||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 2515 ATTAAAGCTGTCCTCGATATCCTGCAGTCGCTTTCCCAACCAGACAGTCCAAACTCAGCT 2574
Query 2572 CAGCATGGTCAAATGCCATCTTCCTCACGGCCGTATGATGACGATGATGTTACCATTGTA 2631
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2575 CAGCATGGTCAAATGCCATCTTCCTCACGGCCATATGATGACGATGATGTTACCATTGTA 2634
Query 2632 GAGCCAAAGCGTCTTCACTCATCTTCACCTAGCCAGGGGGCAGTAAAAACGATAATATTT 2691
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2635 GAGCCAATGCGTCTTCACTCATCTTCACCTAGCCAGGGGGCAGTAAAGACGATAATATTT 2694
Query 2692 TCTCAGTGGACTGGTATGCTTGACTTGGTTGAGCTGCGTATTCTTGAAAGTGGTATTGAA 2751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2695 TCTCAGTGGACTGGTATGCTTGACTTGGTTGAGCTGCGTATTCTTGAAAGTGGTATTGAA 2754
Query 2752 TTCAGAAGATTAGATGGCACAATGAGTCTAGCAGCAAGAGACAGGGCGGTAAAAGAATTC 2811
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2755 TTCAGAAGATTAGATGGCACAATGAGTCTAGCAGCAAGAGACAGGGCGGTTAAAGAATTC 2814
Query 2812 AGTAAAAATCCAGATGTAAAGGTGATGCTGATGTCTCTAAAAGCTGGAAACCTTGGGCTG 2871
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2815 AGTAAAAAACCAGATGTAAAGGTGATGCTGATGTCGCTAAAAGCTGGAAACCTTGGGCTG 2874
Query 2872 AATATGGTAGCTGCATGTCATGTTATTCTCTTGGATCTTTGGTGGAATCCAACTACCGAA 2931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2875 AATATGGTAGCTGCATGTCATGTTATTCTCTTGGATCTTTGGTGGAATCCAACTACCGAA 2934
Query 2932 GATCAGGCGATTGATCGTGCACATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCGC 2991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2935 GATCAGGCGATTGATCGTGCACATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCGC 2994
Query 2992 ATTACTATAAAAGACACCGTTGAGGATAGAATTTTGACGCTTCAGGAAGATAAAAGGACA 3051
|| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 2995 ATAACTATAAAAGACACCGTTGAGGATAGAATTTTGAAGCTTCAGGAAGAGAAAAGGACA 3054
Query 3052 ATGGTTGCATCTGCCTTTGGTGAAGAACATGGTGGAAGCTCTGCAACACGTCTAACAGTA 3111
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3055 ATGGTTGCATCGGCCTTTGGTGAAGAACATGGTGGAAGCTCTGCGACACGTCTAACAGTA 3114
Query 3112 GACGATCTCAAATATCTGTTTATGTTGTAGACTACTCGTTGTCTGGTCTACGCGTAGCCT 3171
||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 3115 GACGATCTCAAGTATCTGTTTATGGTGTAGACTACTCGTTGTATGGTCTAAGCGTAGCCT 3174
Query 3172 TCTAATCGCCTCTTGAACTAGGTTGCTTAGTACAGTATATATGGGAGATTAAGCCCAGAA 3231
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 3175 TCTAATCGCCTCTTGAACTAGGTTGCTTAGTACAGTACATATGGGAGATTTAGCCCAGAA 3234
Query 3232 TTTTGATCAGGAAGAAACCTCTAGCTGCTTTTGTAATGAATTTCCAATACTGTGGCTA-T 3290
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |
Sbjct 3235 TTTTGATCAGGAAGAAACCTCTAGCTGCTTTTGTAATGGATATCCAATACTGTGGC-ACT 3293
Query 3291 CTTTTGGTTTTGTGAGGTTTGAACCCAGTCTATGCATTTTTG-TGTG-C-A---T---T- 3340
| ||||||||||| ||||||||||||| |||||||||||||| ||| | | | |
Sbjct 3294 CCTTTGGTTTTGTAAGGTTTGAACCCAATCTATGCATTTTTGGTGTTTCCAAAGTGCATC 3353
Query 3341 GATTGGAAACAGGCCATATGTAAATAACTAAAATCGGTTCATGGT 3385
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3354 GATTGGAAACAGGCCATAAGTAAATAACTAAAATCGGTTCATGGT 3398
Score = 185 bits (100), Expect = 2e-45
Identities = 129/143 (90%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 390 TGGTGCGGATTATGAGAGACTATCGTCTCAGCAAGCTCCGAAAAGAACTCTTCCGCCCTC 449
|||||| ||||||| |||||| || ||| ||||||||| ||||||||||||||| |||||
Sbjct 264 TGGTGCTGATTATGTGAGACTGTCTTCTGAGCAAGCTCTGAAAAGAACTCTTCCACCCTC 323
Query 450 TTTTAATCCCCCTCCCCTTCCTTCCAGAAGTGGCACTAACAATATAAGTAATGCCAGTGG 509
||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 324 TTTTAATTCCCCTCCCCTTCCTGCCAGAAGTGGCACTAACAATATAAGTAATGCTAGTGG 383
Query 510 GAGTCGCT-TTGGTGCGGATTAT 531
||||| | |||||| |||||||
Sbjct 384 AAGTCG-TGTTGGTGTGGATTAT 405
Score = 174 bits (94), Expect = 4e-42
Identities = 127/143 (89%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 261 TGGTGCT-GATTATGAGAGACTATCGTCTGAGCAAGCTCTGAAAAGAACTCTTCCACCCT 319
||||| | ||||||||||||| || |||| ||||||||||||||||||||||||||||||
Sbjct 393 TGGTG-TGGATTATGAGAGACCATTGTCTCAGCAAGCTCTGAAAAGAACTCTTCCACCCT 451
Query 320 CCTTTAGTTCGCCTCCCTTTCCTTCCAGAAGTGGCGCTAACAATATAAGTAATGCTAGTG 379
| |||| | | |||||| ||||||||||||||||| | ||||||||| |||||||| |||
Sbjct 452 CTTTTAATCCCCCTCCCCTTCCTTCCAGAAGTGGCACAAACAATATACGTAATGCTGGTG 511
Query 380 GGAGTCGCGTTGGTGCGGATTAT 402
|||||||| ||||||| ||||||
Sbjct 512 GGAGTCGCTTTGGTGCCGATTAT 534
> AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672163-18677556 FORWARD LENGTH=3326
Length=3326
Score = 1779 bits (963), Expect = 0.0
Identities = 1675/2012 (83%), Gaps = 75/2012 (4%)
Strand=Plus/Plus
Query 1175 AGAAAGCCAA-AGATGAAGAAGCAAATTCTTCAACACG-AGCATTTAAGTGGAAGAGACC 1232
|||||||||| || |||||||| | | |||||||||| | ||| || | ||||||||
Sbjct 1154 AGAAAGCCAAGGGA-GAAGAAGCGAGTACTTCAACACGCA-AATTCAACAGAAAGAGACC 1211
Query 1233 AGCTGCTGGTACATTAATTGTTTGCCCAGCGAGTGTTGTACGGCAGTGGGCAAGAGAGCT 1292
|||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||
Sbjct 1212 AGCTGCTGGTACTTTAATTGTTTGTCCAGCAAGTGTTGTGCGGCAGTGGGCAAGAGAACT 1271
Query 1293 TGATGAGAAGGTTTCTGAAGAATG-GAAACTTTCTGTGTTAGTCTACCATGGTAGTAATA 1351
||||||||||||| |||| ||| | ||||||||||| ||| | ||||| || |||| |
Sbjct 1272 TGATGAGAAGGTTACTGATGAA-GCCAAACTTTCTGTTTTAATATACCACGGCGGTAACA 1330
Query 1352 GGACCAAAGATCCTAATGAATTAGCAGAATACGATGTGGTTGTGACAACTTACGCTATTG 1411
||||||||||||||| |||| ||||| |||| ||||||||| ||||||||||||| ||||
Sbjct 1331 GGACCAAAGATCCTATTGAACTAGCAAAATATGATGTGGTTATGACAACTTACGCCATTG 1390
Query 1412 TTACTAATGAAGCTCCCAAA-AAATTCTTGGTGGATGAGGATGAGAACGATGAAAAAAGT 1470
|| | ||||||| | ||||| || | |||| ||||| |||||||| |||||||||| |
Sbjct 1391 TTTCAAATGAAG-TTCCAAAGCAACCCCTGGTTGATGACGATGAGAATGATGAAAAAAAT 1449
Query 1471 ACTGACAAATATGGTCTTGCCTCTGGCTTCTCCAACAATAAGAAGCGG-AAAGTCGCGGT 1529
|||| ||||||||||| || ||||||||||||| ||||||||| ||| ||| | | ||
Sbjct 1450 TCTGAAAAATATGGTCTCGCTTCTGGCTTCTCCATCAATAAGAAACGGAAAAAT-GTAGT 1508
Query 1530 GGGTGCCAGTAAGAAGAGT-a-aa-aaaaGAGGT-AGAA-AAAGCACTGACAATTCTTCT 1584
|||| | | |||||||||| | || |||| |||| | || || | ||| | | |||
Sbjct 1509 GGGTACTACTAAGAAGAGTAAGAAGAAAAAAGGTAACAATAATG--CTGGCGA---TTCA 1563
Query 1585 TCTGAGCCC-GATTGTGGTGCTCTAGGAAAAGTTGGGTGGTTCAGAATAGTACTAGATGA 1643
||||| ||| || | |||| |||||| ||||||||||||||||||| | |||||||||||
Sbjct 1564 TCTGA-CCCTGACTCTGGTACTCTAGCAAAAGTTGGGTGGTTCAGAGTTGTACTAGATGA 1622
Query 1644 AGCTCAGACAATAAAGAACCATAGAACACAAGTGGCAAGATCCTGTTGCACTCTTCGAGC 1703
|||||| ||||| ||||| |||||||| || ||||||||| | |||||| |||||||||
Sbjct 1623 AGCTCAAACAATTAAGAATCATAGAACCCAGGTGGCAAGAGCATGTTGCGGTCTTCGAGC 1682
Query 1704 CAAAAGGAGGTGGTGCTTGTCTGGAACACCAATACAAAATACGATTGATGATTTATATAG 1763
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1683 CAAAAGGAGGTGGTGTTTGTCTGGAACACCAATACAAAATACAATAGATGATTTATACAG 1742
Query 1764 CTATTTCAGGTTTCTTAGATATGATCCATATGCGGCGTACAAGTCATT-TTACAGTACAA 1822
||||||||||||||| | ||||||||||||||| | |||||||||||| | || | ||
Sbjct 1743 CTATTTCAGGTTTCTAAAATATGATCCATATGCTGTGTACAAGTCATTCTGCCACCA-AA 1801
Query 1823 TCAAGGTTCCAATTTCCAGAAATT-CTTGTCAAGGTTACAAGAAGCTTCAAGCTGTTCTA 1881
| |||| ||||||||||||||||| | | |||||| |||||||||||||| |||||||||
Sbjct 1802 TTAAGGGTCCAATTTCCAGAAATTCCCT-TCAAGGGTACAAGAAGCTTCAGGCTGTTCTA 1860
Query 1882 AGGGCTATAATGCTGCGCCGCACCAAAGGAACATTACTTGATGGGAAACCCATTATTAAT 1941
|||||||||||||| ||||| || ||||||||||| |||||||| | || || ||||||
Sbjct 1861 AGGGCTATAATGCTACGCCGTACGAAAGGAACATTGCTTGATGGCCAGCCTATAATTAAT 1920
Query 1942 CTACCTCCaaa-aaaaGTTAATTTGAG-CACGGTAGATTTTTCAGTGGAAGAGCGCTCTT 1999
||||| ||||| | || |||||||||| || ||| || ||||| || || ||||| ||||
Sbjct 1921 CTACCACCAAAGACAA-TTAATTTGAGCCA-GGTGGACTTTTCGGTAGAGGAGCGGTCTT 1978
Query 2000 TCTACAG-GAAGCTTGAAGCGGATTCACGTTCACAGTTCAAGGCCTATGCTGATGCGGGA 2058
||||| | |||||||||| | ||||| ||||| ||||||||||| ||||||| ||| |||
Sbjct 1979 TCTAC-GTGAAGCTTGAATCCGATTCCCGTTCTCAGTTCAAGGCATATGCTGCTGCAGGA 2037
Query 2059 ACTTTGAGTCAAAACTACGCAAATATTCTTCTGATGCTTTTGCGACTCCGCCAAGCTTGT 2118
||||||| ||||||||| ||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 2038 ACTTTGAATCAAAACTATGCAAACATTCTTCTCATGCTTTTGCGACTACGCCAAGCTTGT 2097
Query 2119 GACCACCCACAACTTGTT-AAAGTATATAACTCAGATCCTGTTGGAAAAGAATCAGAAGC 2177
|||||||| ||||||||| |||| ||||||||||||| |||||||||||| ||||||||
Sbjct 2098 GACCACCCCCAACTTGTTAAAAG-ATATAACTCAGATTCTGTTGGAAAAGTATCAGAAGA 2156
Query 2178 AGCAGTTAGAAGACTCCCTAGGGAGGCTCGAAG-CAGACTGATCAATCGCTTAGAGTTAT 2236
||| |||| || |||||||| |||| || || || ||| ||| ||||||||| ||
Sbjct 2157 AGCTGTTAAAAAACTCCCTAAAGAGGATC-TAGTTAGCCTGCTCAGTCGCTTAGA---AT 2212
Query 2237 CATCTGCCATCTGCTATGAGTGCAATGAGCCACCAGAAAAACCTGTTGTTAAGTTGTGTG 2296
| ||| ||||||| | || ||| |||| ||||||||| | |||||||||| |||||||
Sbjct 2213 CGTCTCCCATCTGTTGTGTCTGCCATGATCCACCAGAAGACCCTGTTGTTACTTTGTGTG 2272
Query 2297 GCCATGTATTTTGCTATGAATGTGTTTTAGAATACATAACTGGGGATGAGAACACGTGCC 2356
||||| |||| |||||| | ||||| | ||| || || || ||||||||| |||||||||
Sbjct 2273 GCCATATATTCTGCTATCAGTGTGTATCAGATTATATCACAGGGGATGAGGACACGTGCC 2332
Query 2357 CTGTACCGAGATGCAAACAACAGCTTGCGCGTGATGTTGTTTTCTCTGAATCTTCGCTTA 2416
||| || ||||||| | |||||||||||| |||||||||||||||| |||| ||||||
Sbjct 2333 CTGCGCCTAGATGCAGAGAACAGCTTGCGCATGATGTTGTTTTCTCTAAATCCACGCTTA 2392
Query 2417 GAAATTGCATTTCTGATGATTTGGGCTGTAGTTCCTC-GCATGATAA-AGGTC-TCGATA 2473
||| |||| || ||||||||||||| ||||||||||| | | ||||| | ||| | ||||
Sbjct 2393 GAAGTTGCGTTGCTGATGATTTGGGTTGTAGTTCCTCAG-AGGATAATA-GTCAT-GATA 2449
Query 2474 GATCGGTTTTTGAAAAAAGCGAGTTTTGTTCATCAAAAATCAAAGCTGTCCTCGATATCC 2533
||| |||||| | || |||||||| |||||||||| |||||||||||| | ||||| |
Sbjct 2450 AATCAGTTTTTCAGAATGGCGAGTTTAGTTCATCAAAGATCAAAGCTGTCTTAGATATTC 2509
Query 2534 TGCAGTCGCTTTCCAAACAAGACACTCCAAACTCAGCTCAGCATGGTCAAATGCCATCTT 2593
||||||||||||| || |||| |||| |||||||| | ||| ||||||||||| | ||||
Sbjct 2510 TGCAGTCGCTTTCTAACCAAGGCACTTCAAACTCAACACAGAATGGTCAAATGGCTTCTT 2569
Query 2594 CCT--CA-CGGCC----------G-T-ATGATGACGATGATG-T-T-ACCATTGTAGAGC 2635
||| || | ||| | | ||||||| ||||||| | | |||||||| |||
Sbjct 2570 CCTCGCAGCAGCCGAATGATGATGATGATGATGATGATGATGATGTCACCATTGTCGAG- 2628
Query 2636 CAAA-GCGTCTTCACTCATCTTCACCT-A-GCCAGGGGGCAGTAAAAACGATAATATTTT 2692
||| | |||| | ||| || | || | | | || || |||||||||| |||||||
Sbjct 2629 AAAACGAGTCTGAAGTCAACTCCTTCTAATG-GA-GGACCAATAAAAACGATTATATTTT 2686
Query 2693 CTCAGTGGACTGGTATGCTTGACTTGGTTGAGCTG-CGTATTCTTGAAAGTGGTATTGAA 2751
|||||||||||||||||||||||||||| ||||| | | | |||||| | |||| |||
Sbjct 2687 CTCAGTGGACTGGTATGCTTGACTTGGTGGAGCTATC-TCTAATTGAAAATAGTATAGAA 2745
Query 2752 TTCAGAAGATTAGATGGCACAATGAGTCTAGCAGCAAGAGACAGGGCGGTAAAAGAATTC 2811
||||||||||||||||| |||||||||||| || |||||||| || || |||||||||
Sbjct 2746 TTCAGAAGATTAGATGGTACAATGAGTCTAATTGCCAGAGACAGAGCTGTGAAAGAATTC 2805
Query 2812 AGTAAAAATCCAGATGTAAAGGTGATGCTGATGTCTCTAAAAGCTGGAAACCTTGGGCTG 2871
|| || ||||||||||||| |||||| | |||||| ||||||||||||| |||||||||
Sbjct 2806 AGCAACGATCCAGATGTAAAAGTGATGATAATGTCTTTAAAAGCTGGAAATCTTGGGCTG 2865
Query 2872 AATATGGTAGCTGCATGTCATGTTATTCT-CTTGGATCTTTGGTGGAATCCAACTACCGA 2930
|||||| | |||||||||||||| ||||| |||| |||| ||||||||||||||||| ||
Sbjct 2866 AATATGATTGCTGCATGTCATGTCATTCTTCTTG-ATCTATGGTGGAATCCAACTACTGA 2924
Query 2931 AGATCAGGCGATTGATCGTGCACATCGTATTGGACAAACTCGGCCAGTTACTGTAACTCG 2990
||||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 2925 AGATCAGGCTATTGATCGAGCACATCGTATTGGACAAACTCGACCTGTTACTGTAACTCG 2984
Query 2991 CATTACTATAAAAGACACCGTTGAGGATAGAATTTTGACGCTTCAGGAAGATAAAAGGAC 3050
||||| |||||| | || || ||||||||||||||| | || |||||||| ||||| |
Sbjct 2985 TATTACGATAAAAAATACTGTGGAGGATAGAATTTTGGCTCTCCAGGAAGAGAAAAGAAA 3044
Query 3051 AATGGTTGCATCTGCCTTTGGTGAAGAACATGGTGGAAGCTCTGCAACACG-TCTAACAG 3109
||||||||| ||||||||||||||||| |||||||||||||||||||| || | ||||||
Sbjct 3045 AATGGTTGCGTCTGCCTTTGGTGAAGATCATGGTGGAAGCTCTGCAACTCGAT-TAACAG 3103
Query 3110 TAGACGATCTCAAATATCTGTTTATGTTGTAG 3141
| || |||||||||||||| || ||| |||||
Sbjct 3104 TTGATGATCTCAAATATCTATTCATGGTGTAG 3135
Score = 348 bits (188), Expect = 2e-94
Identities = 358/439 (82%), Gaps = 16/439 (4%)
Strand=Plus/Plus
Query 635 GGATCCTGCCTCCATCTCTGACGCATGGAACATCTGCTTCTGTTTTGCATCATGCTGG-T 693
||||||| ||||||||| || |||| ||||||||||| ||| || ||| | ||| |
Sbjct 662 GGATCCTACCTCCATCTGTGGCGCACGGAACATCTGCGTCTCCTTCACATTTTAATGGAT 721
Query 694 TCAAGTGATCCAATGCACAGGTTTGGTATTGGTGAAGATAGGAATCCTGATAACGATGAG 753
| ||||||||||||||| ||| ||| || || ||||| |||||| | || || || |||
Sbjct 722 T-AAGTGATCCAATGCATAGGAATGGCATAGGCGAAGAAAGGAATTCGGAAAATGACGAG 780
Query 754 AGGTTGGTTTATCAGGCTGCACTACAGGATTTGAATCAACCC-ATTACCGAAAG-CGATC 811
||| || | |||||||||||||||||||| ||||||||||| | | ||| | | ||||
Sbjct 781 AGGCTGATCTATCAGGCTGCACTACAGGAACTGAATCAACCCAAGT-CCG-AGGTCGATT 838
Query 812 TACCTCCTGGTGTTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATTGCATTGGCATGGA 871
||||| ||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 839 TACCTGCTGGTCTTCTTTCGGTTCCCCTTATGAAGCATCAGAAAATTGCATTGGCATGGA 898
Query 872 TGTTTCAGAAGGAAAC-AAGAAGTTTTAACTGTGCGGGAGGAATACTAGCAGATGATCAG 930
|||||||||||||||| || | |||| ||||| |||||| ||| |||| |||||||||
Sbjct 899 TGTTTCAGAAGGAAACTAATA-GTTTGCACTGTATGGGAGGGATATTAGCTGATGATCAG 957
Query 931 GGACTTGGTAAGACGGTCTCGACGATTGCTCTTATCCTAAAGCAAAAG-ATTGTGTCACT 989
|| ||||||||||| |||||||| ||||| |||||||||||||||| | | | | ||
Sbjct 958 GGCCTTGGTAAGACAGTCTCGACTATTGCGCTTATCCTAAAGCAAATGCAC-GAGGCAAA 1016
Query 990 ACTGAAGTCTGCAA-A-TTCATGCAAGCAAGAAACTGAGGCATTAG-TCCTGGATGCTGA 1046
| | ||||| ||| | |||| |||| ||||| |||| ||||| | || ||||||||||
Sbjct 1017 ATTAAAGTC--CAAGAATTCAGGCAATCAAGAGGCTGAAGCATTGGATC-TGGATGCTGA 1073
Query 1047 TGATGAGTCAGACAATGCA 1065
|||||||||||| ||||||
Sbjct 1074 TGATGAGTCAGAAAATGCA 1092
> AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=1917
Length=1917
Score = 215 bits (116), Expect = 3e-54
Identities = 195/232 (84%), Gaps = 9/232 (4%)
Strand=Plus/Plus
Query 740 CTGATAACGATGAGAGGTTGGTTTATCAGGCTGCACTACAGGATTTGAATCAACCCATTA 799
||| |||||| ||| || | | |||||||||||| |||| ||| |||| ||||||| |
Sbjct 62 CTGTTAACGA-GAG-GG-TCATCTATCAGGCTGCATTACAAGATCTGAAGCAACCCAAGA 118
Query 800 CCG-AAAGCGATCTACCTCCTGGTGTTCTTTCAGTTCCTCTTATGAGGCATCAGAAAATT 858
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 CCGAAAAG-GATCTACCTCCTGGTGTTCTTACAGTTCCTCTTATGAGGCATCAGAAAATT 177
Query 859 GCATTGG-CATGGATGTTTCAGAAGGAAACAAGAAGTTTTAACTGTGCGGGAGGAATACT 917
|||||| | |||||| | |||| |||| |||||| ||||| |||||| ||| |
Sbjct 178 GCATTGAAC-TGGATGCGTAAGAAAGAAAAAAGAAGCAGGCACTGTTTGGGAGGGATATT 236
Query 918 AGCAGATGATCAGGGACTTGGTAAGACGGTCTCGACGAT-TGCTCTTATCCT 968
|||||||||||||||||||||||| ||| |||||||||| | ||||||||||
Sbjct 237 AGCAGATGATCAGGGACTTGGTAAAACGATCTCGACGATCT-CTCTTATCCT 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 168460594594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5