BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479521
Length=1809
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20020.1 | Symbols: ATPRMT6, PRMT6 | protein arginine methyl... 2876 0.0
> AT3G20020.1 | Symbols: ATPRMT6, PRMT6 | protein arginine methyltransferase
6 | chr3:6983705-6988099 REVERSE LENGTH=1812
Length=1812
Score = 2876 bits (1557), Expect = 0.0
Identities = 1733/1816 (95%), Gaps = 20/1816 (1%)
Strand=Plus/Plus
Query 1 AAATTACATAATTACCAAAGaaaaaaaaaaCAAATTTTTTAGGGG-ATTAGTTAGGaaaa 59
||||||||||||||||||||||||||| | ||||||||||| ||| ||| | |
Sbjct 2 AAATTACATAATTACCAAAGAAAAAAATGA-TTTTTTTTTAGGGGTTTTAATTA-GTTAG 59
Query 60 aaaaaaaGAGGCTCCTTT-G--GAACAAGTATTACAACAGTCGTCGTCGTCAAGCGGCGT 116
|||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAAAAAGGAGGCTCCTTTGGAAGAACAAGTATTACAACAGTCGTCGTCGTCAAGCGGCGT 119
Query 117 CAGAGAAAGtctctctctctctGTGTTTAACTGaaaaaaaTGCAATCTGGCGGCGATTTC 176
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 CAGAGAAAG----TCTCTCTCTGTGTCTAACTGAAAAAAATGCAATCTGGCGGCGATTTC 175
Query 177 AGCAACGGTTTCCACGGCGACCAACACCGCGAGCTTGAATTGGAAGACAAGCAAGTCCCC 236
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 176 AGCAACGGTTTCCACGGAGACCATCACCGCGAGCTTGAATTGGAAGACAAGCAAGGCCCC 235
Query 237 GGTCTCAGCTCTTTTGGCCGAGCCAAGAGGCGCAGTCACTCCGGAGCTCGTGACCCTAGA 296
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 236 AGTCTCAGCTCTTTTGGCCGAGCCAAGAAGCGCAGTCACGCCGGAGCTCGTGACCCTCGA 295
Query 297 GGCGGTCTCGCCAATGTGCTTAGGGTTTCCGACCAGCTTGGCGAGCAGAAGTCACTGGAG 356
||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||
Sbjct 296 GGCGGTCTCGCCAATGTGCTTAGGGTTTCTGACCAGCTTGGCGAGCACAAGTCATTGGAG 355
Query 357 ACTTCAGAATCTCCTCCTCCGCCTTGTACTGACTTCGACGTTGCCTACTTTCATTCCTAT 416
||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 ACTTCGGAATCTTCTCCTCCGCCTTGTACTGACTTCGACGTTGCCTATTTTCATTCCTAT 415
Query 417 GCTCACGTTGGGATTCACGAAGAGATGATCAAGGACCGGGCAAGGACGGAAACTTATAGG 476
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 416 GCTCACGTTGGGATTCACGAAGAGATGATCAAGGATCGGGCAAGGACAGAAACTTATAGG 475
Query 477 GAAGCCATAATGCAGCATCAGAGCTTAATTC-AAGGCAAGGTCGTGGTGGACGTTGGCTG 535
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 476 GAAGCCATAATGCAGCATCAGAGCTTAA-TCGAAGGCAAGGTCGTGGTGGACGTTGGCTG 534
Query 536 TGGAACAGGCATCCTTTCAATCTTCTGTGCTCAAGCAGGAGCAAAACGGGTATATGCTGT 595
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 535 TGGAACTGGCATCCTTTCAATCTTCTGTGCTCAAGCAGGTGCAAAACGGGTATATGCTGT 594
Query 596 AGATGCAAGTGATATTGCTGTCCAGGCAAAGGAAGTTGTGAAAGCCAACAGTTTATCCGA 655
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 595 AGATGCAAGTGATATTGCTGTCCAGGCAAAGGAAGTTGTGAAAGCCAACGGTTTATCCGA 654
Query 656 CAAGGTCATTGTCTTGCATGGGAGAGTGGAGGATGTTGAAATCGACGAGGAGGTTGATGT 715
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TAAGGTCATTGTCTTGCACGGGAGAGTGGAGGATGTTGAAATCGACGAGGAGGTTGATGT 714
Query 716 TATAATTTCAGAGTGGATGGGTTACATGCTCTTGTATGAGAGCATGCTGGGAAGTGTTAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TATAATTTCAGAGTGGATGGGTTACATGCTCTTGTATGAGAGCATGCTGGGAAGTGTTAT 774
Query 776 TACAGCTAGAGATCGCTGGTTGAAGCCTGGAGGTTTAATTCTCCCATCACATGCAACATT 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CACAGCTAGAGATCGCTGGTTGAAGCCTGGAGGTTTAATTCTCCCATCACATGCAACATT 834
Query 836 ATACATGGCACCTGTTTCACACCCTGACAGATACAGTCACAGCATTGATTTTTGGCGCAA 895
||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 835 ATACATGGCACCTATTTCTCACCCTGACAGATACAGTCACAGTATTGATTTTTGGCGCAA 894
Query 896 TGTTTATGGAATCGATATGTCTGCCATGATGCAATTAGCTAAACAGTGTGCGTTTGAAGA 955
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 895 TGTTTATGGAATTGATATGTCTGCGATGATGCAATTAGCTAAACAGTGTGCTTTTGAAGA 954
Query 956 ACCCAGCGTAGAGTCCATATCAGGCGAGAACGTTCTAACATGGCCAGAAGTGGTTAAACA 1015
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ACCCAGCGTGGAGTCCATATCAGGCGAGAACGTTCTAACATGGCCAGAAGTGGTTAAACA 1014
Query 1016 TATAGACTGTCAAACTATAAAAATCCAAGAGCTAGACTCTGTTACTGCAAGATATAAATT 1075
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1015 TATAGACTGTAAAACTATAAAAATCCAAGAGCTAGACTCGGTTACTGCAAGATATAAATT 1074
Query 1076 CAACTCAATGATGAGAGCTCCTATGCATGGTTTTGCATTTTGGTTCGACGTTGAATTCAG 1135
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CAACTCAATGATGAGAGCTCCAATGCATGGTTTTGCATTTTGGTTCGACGTTGAATTCAG 1134
Query 1136 CGGACCGACCTCTTCGCCTGCCAAGAATACTAGTGAAACTAGTGTTGCTAGTGGTTCTTC 1195
||||||| ||||||| ||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1135 CGGACCGGCCTCTTCACCTGCCAAGAATACTAGTGAAACCAGTATTGCTAGTGGTTCTTC 1194
Query 1196 TTCGATAAGTCCTTCTGGAGAAGTAAATCAGAAGAAGCGGACTAATCCGAGTGATGCACT 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTCGATAAGTCCTTCTGGAGAAGTAAATCAGAAGAAGCGGACTAATCCGAGTGATGCACT 1254
Query 1256 CGTGTTGTCCACCTCTCCCGAGGCTCCTCCAACGCATTGGCAGCAAACGATTGTATATTT 1315
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1255 TGTGTTGTCCACCTCTCCCGAGTCTCCTCCAACGCATTGGCAGCAAACGATTGTATATTT 1314
Query 1316 CTATGACCCTATAGACGTAGAGCAAGACCAAGTCATTGAAGGTTCCGTGACACTTTCTCA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CTATGACCCTATAGACGTAGAGCAAGACCAAGTCATTGAAGGTTCCGTGACACTTTCTCA 1374
Query 1376 AAGCAAAGAGAACCGGAGATTCATGAACATCCACCTCGAATATTCCTCGGCCGGCCGTTC 1435
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 AAGCAAAGAGAACAAGAGATTCATGAACATCCACCTCGAATATTCCTCGGCCGGCCGTTC 1434
Query 1436 CTTTGTAAAAGAGTCAGTAATGCGTTAAGGAGGCGATTCACTGACAAATCCGTCCTTACC 1495
||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||
Sbjct 1435 CTTTGTAAAAGAGTCAGTAATGCGTTAAGGAGGCGATTCTCTGACAATTCA-TCCTTACC 1493
Query 1496 TTTAGAAGCCCTGTAAGGTGTTAGTCTCTTCTGCTAAAGCAATTATTAGTCCAGAAATTG 1555
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TTTAGAAGCCCTGTAAGGTGT-AGTCTCTTCTGCTAAAGCAATTATTAGTCCAGAAATTG 1552
Query 1556 CGGAACCAATAATTGAAGACATTGACAAACACAAGCTATTTTTAGTCTGCGAAAACACCA 1615
| ||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1553 CAGAACCAACAATTGAGGACATTGACAAACTCAAGCTATTTTTAGTCTGCGAAAACACCA 1612
Query 1616 GTTCTTGTAAGATTATTTAGGTTTTAGATCAGATGGAAGCAATTTTAGGACATTGTTCTT 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1613 GTTCTTGTAAGATTATTTAGGTTTTAGATCAGATGGAAGCAATTTTAGGACATTGTTCTT 1672
Query 1676 GAGGCTATTCT-TA-GCTTGTTACTAGCCAACCACTCAGCAGACACTTCTCTTTGAGTGC 1733
||||||||| | || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1673 GAGGCTATT-TATAAGCTTGTTACTAGCCATCCACTCAGCAGACACTTCTCTTTGAGTGC 1731
Query 1734 TTATATATGTCATGCATATTTTATTGGTAATTTGTATAACCTAATTCATCAAGATCAATT 1793
|||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct 1732 TTATATATGTCATGCATATTTTATTGGTGATTTGTATAA---AATTCATCATGATCAATT 1788
Query 1794 TATTCAATTTAGTGTT 1809
|||||||||||| |||
Sbjct 1789 TATTCAATTTAGCGTT 1804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89507571735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5