BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479523
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20040.1 | Symbols: ATHXK4, HKL2 | Hexokinase | chr3:6994894... 3048 0.0
AT1G50460.1 | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:... 1219 0.0
> AT3G20040.1 | Symbols: ATHXK4, HKL2 | Hexokinase | chr3:6994894-6998171
FORWARD LENGTH=2039
Length=2039
Score = 3048 bits (1650), Expect = 0.0
Identities = 1824/1908 (96%), Gaps = 11/1908 (1%)
Strand=Plus/Plus
Query 1 ATCAATCTCTCTCTCGCCGCGCCTTTTCGCCGGAAGGACATAACTTTCGCCGGAATTTGT 60
||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 32 ATCAATCTCTCCCTCGCCGCGCCTTTTCGCCGGAAGGACATAACTTTTACCGGGATTTGT 91
Query 61 CGTCTACAACGG-ACCTTCGAGCGCAAGGCTATTTAATCGGAAGAATTTGGAGTCACGGA 119
|||||||| || ||| |||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 92 TGTCTACAAGGGAACC-TCGAGCGCAAGGCTGTTTAATCGGAAGAATCTGGAGTCACGGA 150
Query 120 GGAGCaaaaa--aacaaaaaGAGAGACCCTTTATGCTGAGACGGTTTAA-TTTGTATCTG 176
| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 151 GAAGCAAAAATGAACAAAAAGAGAGACCCTTTATGCTGAGACGGTTTAATTTTGTATCTG 210
Query 177 TGGTTATAGAAAGGAA---TATGCGTTGAAATGGAGCCGTAGAGAGTTATTCTGATCGGT 233
|||||||||||||||| | |||| |||||||||||| || || |||||||||||||||
Sbjct 211 TGGTTATAGAAAGGAATCGTTTGCGATGAAATGGAGCCTTATAGGGTTATTCTGATCGGT 270
Query 234 GGTTGAAGCTTTGTCATCTGCATTTCGTGTCAATCTGATTATAGACTCT-TTTAAATTGC 292
||||||||| ||||||| |||||||||||||| |||| ||||||||||| ||| ||||||
Sbjct 271 GGTTGAAGCGTTGTCATTTGCATTTCGTGTCATTCTGGTTATAGACTCTGTTTCAATTGC 330
Query 293 TTCTCGTCGTAAAGGCGCTTGCTTTTGTGGGTAACTTATCTCGATTTTTCTGAAAGACGT 352
||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||
Sbjct 331 TTCTCGTCGTAAAGGCGTTTGCTTTTGTGAGTAATTTATCTCGATTCTTCTGAAAGACGT 390
Query 353 AGAAAGAGACAAGGTTGTGTGTAGATATTTGG-AATGGGGAGGGTTTTGGTGATGTTGAC 411
||||||||| |||||||||| |||||| |||| |||||||| ||||||||||||||||||
Sbjct 391 AGAAAGAGAGAAGGTTGTGTATAGATA-TTGGAAATGGGGAAGGTTTTGGTGATGTTGAC 449
Query 412 GGCAGCTGCGGCTGTGGTGGCTTGTTCAATGGCGACGGTGATGGTGAGaaggaggatgaa 471
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 450 GGCAGCTGCGGCTGTGGTGGCTTGTTCAGTGGCGACTGTGATGGTGAGAAGGAGGATGAA 509
Query 472 agggaggaggaagtggaggagggtggtgggtatacttaaggatttggaggaggCTTGTGA 531
|||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 510 AGGGAGGAGGAAATGGAGGAGGGTGGTGGGTTTACTTAAGGATTTGGAGGAAGCTTGTGA 569
Query 532 GACGCCTTTAGGAAGGTTGAGGCAGATGGTTGATGCTATAGCTGTGGAGATGCAAGCTGG 591
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 570 GACGCCTTTAGGAAGGTTGAGGCAGATGGTTGATGCCATAGCTGTGGAGATGCAAGCTGG 629
Query 592 TTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGCTGCTCACTTTTGTTGATGATCTTCC 651
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 630 TTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGTTGCTCACTTTTGTTGATGATCTTCC 689
Query 652 CAATGAGAGCGAGAGAGGAACTTATTACGCCCTTCATCTTGGAGGCTCTTACTTTAGGAT 711
||||| |||||||| |||||| ||||| || ||||||||||||||||| |||||||||||
Sbjct 690 CAATGGGAGCGAGACAGGAACCTATTATGCACTTCATCTTGGAGGCTCCTACTTTAGGAT 749
Query 712 AATAAAGGTTCATCTGGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGGCA 771
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 750 AATAAAGGTTCATCTAGGTGGTCAAAGATCATCTCTTGAAGTTCAAGATGTTGAACGACA 809
Query 772 TTCCATACCGACATCTTTGATGAACAGCACCAGCGAGGTTCTCTTCGACTTTCTCGCATC 831
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 810 TTCCATACCAACATCTTTGATGAATAGCACTAGCGAGGTTCTCTTCGACTTTCTCGCATC 869
Query 832 ATCCTTGCAGAGGTTTATTGAAAAGGAAGGGAACGATTTCAATTTGTCGCAACCTGTAAA 891
|||||||||||||||||||||||| |||||||||||||||| |||||| |||||| ||||
Sbjct 870 ATCCTTGCAGAGGTTTATTGAAAAAGAAGGGAACGATTTCAGTTTGTCACAACCTTTAAA 929
Query 892 AAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAAACATCTATTTCATCAGGAGT 951
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 930 AAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAGACATCCATCTCATCAGGAGT 989
Query 952 TCTAATTAAATGGACCAAAGGTTTTGCAATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 990 TCTAATTAAATGGACCAAAGGTTTTGCAATTAGTGAAATGGCTGGGGAAGACATTGCTGA 1049
Query 1012 ATGTCTACAAGGAGCATTGAACAAGAGAGGGCTAGATATTCGCGTTGCAGCTCTTGTGAA 1071
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 ATGTCTACAAGGAGCGTTGAACAAGAGAGGGCTAGATATTCGCGTTGCAGCTCTTGTGAA 1109
Query 1072 TGATACTGTTGGGGCATTATCCTTTGGACATTTTCATGACCCAGACACAATTGCCGCTGT 1131
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1110 TGATACTGTTGGGGCTTTATCCTTTGGACATTTTCATGACCCAGACACAATTGCTGCTGT 1169
Query 1132 TGTCTTTGGAACAGGTAGTAATGCATGTTACCTTGAACGAACTGATGCCATAATCAAGTG 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 TGTCTTTGGAACAGGTAGTAATGCATGTTACCTTGAACGAACTGATGCCATAATCAAGTG 1229
Query 1192 TCAAAATCCACGCACAACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAACTTTTG 1251
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TCAAAATCCACGCACGACTTCTGGAAGCATGGTGGTCAATATGGAGTGGGGAAACTTTTG 1289
Query 1252 GTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 GTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTTGGATGCAGAGAGTATGAATTC 1349
Query 1312 AAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGTCCGCAG 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 AAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGTATCTGGGCGACATTGTCCGCAG 1409
Query 1372 AGTAATTCTTCGAATGTCACAAGAGTCTGACATCTTTGGACCCATCTCATCCATTTTATC 1431
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1410 AGTAATTCTTCGAATGTCACAAGAGTCCGACATCTTTGGACCTATCTCATCCATTTTATC 1469
Query 1432 TACGCCTTTTGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACACATCTGA 1491
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1470 CACGCCTTTCGTTCTGAGAACAAATTCTGTCTCAGCAATGCATGAAGATGACACATCCGA 1529
Query 1492 GTTACAAGAAGTAGCAAGAATTTTGAAAGATTTAGGGGTGTCAGAGGTACCATTGAAGGT 1551
|||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1530 GTTACAAGAAGTAGCACGAATCTTGAAAGATTTAGGGGTGTCAGAGGTACCAATGAAGGT 1589
Query 1552 GAGGAAACTTGTAGTGAAGATATGCGATGTAGTGACACGCAGAGCAGCTAGGCTAGCAGC 1611
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1590 GAGGAAACTTGTAGTGAAGATCTGCGATGTAGTGACACGCAGAGCAGCTAGGCTAGCAGC 1649
Query 1612 AGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGTGGAGGAGGAAGGAG 1671
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1650 AGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGAGATGGGAGCGGAGGAGGAAGGAG 1709
Query 1672 AAGCGATAAGCAAATAATGAGAAGAACAGTGGTGGCAGTAGAAGGAGGTCTGTATTTGAA 1731
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1710 AAGCGATAAGCAGATAATGAGAAGAACAGTGGTGGCAGTTGAAGGAGGTCTGTATTTGAA 1769
Query 1732 CTACAGGATGTTCAGAGAATATATGGACGAAGCTCTGAGAGATATACTGGGAGAAGATGT 1791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 CTACAGGATGTTCAGAGAATATATGGACGAAGCTCTGAGAGATATACTGGGAGAAGATGT 1829
Query 1792 GGCTCAACATGTAGTCGTTAAGGCCATGGAAGATGGTTCCAGCATTGGCTCTGCATTGTT 1851
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 GGCTCAACACGTAGTGGTGAAGGCCATGGAAGATGGTTCCAGCATTGGCTCTGCATTGTT 1889
Query 1852 GTTGGCTTCCTCACAAAGTGTTCAAACCATACCATCCGTATGAATAAT 1899
| ||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1890 GCTGGCTTCGTCACAAAGTGTTCAAACAATACCATCCGTATGAATAAT 1937
> AT1G50460.1 | Symbols: HKL1, ATHKL1 | hexokinase-like 1 | chr1:18693684-18697659
FORWARD LENGTH=2074
Length=2074
Score = 1219 bits (660), Expect = 0.0
Identities = 1212/1473 (82%), Gaps = 60/1473 (4%)
Strand=Plus/Plus
Query 407 TTGACGGCAGCTGCGGCTGTGGTGGCTTGTTC-AATGGCGACGGTGATGG-TGAGaagga 464
||| |||| | ||| | ||| | ||||||||| || || ||||||||| || | ||||
Sbjct 370 TTG-CGGCGGTTGCTGTTGTTGCGGCTTGTTCTGTTGCCG-CGGTGATGGTTG-GGAGGA 426
Query 465 ggatgaaag-ggaggaggaagtggagga-gggtggtgggtatactt-aaggatttggagg 521
||||| ||| | ||||||| ||||||| | || || | || || || || |||||||
Sbjct 427 GGATG-AAGAGTCGGAGGAAATGGAGGACTGTTGTTGAG-AT-TTTGAAAGAGTTGGAGG 483
Query 522 aggCTTGTGAGACGCC-TTTAGGAAGGTTGAGGC-AGATGGTTGATGCTATAGCTGTGGA 579
| | |||||| || || || || |||||||||| || ||||||||||||| || |||||
Sbjct 484 ATGATTGTGATACTCCGGTT-GGGAGGTTGAGGCAAG-TGGTTGATGCTATGGCCGTGGA 541
Query 580 GATGCAAGCTGGTTTGGTTTCTGAAGGAGGGTCAAAGCTTAAAATGCTGCTCACTTTTGT 639
|||||| |||||||||| ||||||||| || || |||||||||||||| |||||||| ||
Sbjct 542 GATGCACGCTGGTTTGGCTTCTGAAGGTGGCTCTAAGCTTAAAATGCTCCTCACTTTCGT 601
Query 640 TGATGATCTT-CCCAATGAGAGCGAGAGAGGAACTTATTACGCCCTTCATCTTGGAGGCT 698
|||||| || |||| || ||| |||| ||| |||||||| || ||||| |||||||||
Sbjct 602 CGATGAT-TTGCCCACTGGGAGGGAGAAAGGTACTTATTATGCACTTCACCTTGGAGGCA 660
Query 699 CTTACTTTAGGATAATAAAGGTTCATCTGGGTGGTCAAAGATCATCTCTTGAAGTTCAAG 758
|||| |||||||| ||| ||||| |||||||| |||||| || | ||| || |||||||
Sbjct 661 CTTATTTTAGGATTTTAAGGGTTCTTCTGGGTGATCAAAGGTCTTATCTAGATGTTCAAG 720
Query 759 ATGTTGAACGGCATTCC-ATACCGACATC-TTTGATGAACAGCACCAGCGAGGTTCTCTT 816
|||||||||| || || ||||| || | ||||||||| ||||||||||||||||| ||
Sbjct 721 ATGTTGAACGACA-CCCAATACCTTCA-CATTTGATGAATAGCACCAGCGAGGTTCTTTT 778
Query 817 CGACTTTCTCGCATCATCCTTGCAGAGGTTTATTGAAAAGGAAGG-GAACGATTTCAATT 875
| |||||||||| | |||||| | |||||||||||||||| ||| |||| | | |
Sbjct 779 CAACTTTCTCGCCTTTTCCTTGGAAAGGTTTATTGAAAAGG-AGGAAAACGGGTCCGA-- 835
Query 876 TGTCGCAACCTGTAAAAAGGGAACTTGCGTTTACTTTTTCTTTCCCAGTCAAGCAAACAT 935
| || ||| ||| | |||||||||||| ||||| || || ||||| |||||||| || |
Sbjct 836 T-TCACAAGGTGTTAGAAGGGAACTTGCATTTACGTTCTCATTCCCTGTCAAGCATACTT 894
Query 936 CTATTTCATCAGGAGTTCTAATTAAATGGACCAAAGGTTTTGCA-ATTAGTGAAATGGCT 994
||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 895 CTATTTCTTCAGGAGTTCTAATTAAATGGACCAAAGGTTTTG-AGATTAGTGAAATGGTT 953
Query 995 GGGGAAGACATTGCTGAATGTCTACAAGGAGCAT-TGAACAAGA-GAGGGCTAGATATTC 1052
||| |||| || |||||||||||||||||||| | |||||| || |||| |||||||| |
Sbjct 954 GGGCAAGATATAGCTGAATGTCTACAAGGAGC-TCTGAACA-GAAGAGGCCTAGATATGC 1011
Query 1053 GCGTTGCAGCTCTTGTGAATGATACTGTTGGGGCATTATC-CTTTGGACATTTTCATGAC 1111
||||| ||||||||||||||||||||||| || || || ||| ||| ||| ||| ||
Sbjct 1012 ATGTTGCGGCTCTTGTGAATGATACTGTTGGAGCCTTGTCGCTT-GGATATTATCACGAT 1070
Query 1112 CCAGACACAATTGCCGCTGTTGTCTTTGGAACAGGTAGTAATGCATGTTACCTTG-AACG 1170
||||| || ||| || ||||| ||||||||||||||||||||||||||| ||| || |
Sbjct 1071 CCAGATACGGTTGTTGCGGTTGTATTTGGAACAGGTAGTAATGCATGTTAC-TTGGAAAG 1129
Query 1171 AACTGATGCCATAATCAAGTGTCAAAATCCACGCACAACTTCTGGAAGCATGGTGGTCAA 1230
||| |||||||||||||||||||| || | ||||||||||||||||||||||| ||
Sbjct 1130 AACCGATGCCATAATCAAGTGTCAGGGTCTGCTTACAACTTCTGGAAGCATGGTGGTAAA 1189
Query 1231 TATGGAGTGGGGAAACTTTTGGTCATCTCGTCTGCCAAGAACTTCATATGACCTTGAGTT 1290
||||||||||||||| |||||||| |||| | |||| |||||||| |||||| |||| ||
Sbjct 1190 TATGGAGTGGGGAAATTTTTGGTCCTCTCATTTGCCTAGAACTTCGTATGACATTGACTT 1249
Query 1291 GGATGCAGAGAGTATGAATT-CAAATGACATGGGCTTTGAGAAGATGATAGGAGGGATGT 1349
||||||||||||| | || | ||||||| ||||| ||||||||||||||| ||| ||||
Sbjct 1250 GGATGCAGAGAGT-TCAAATGCAAATGATATGGGATTTGAGAAGATGATATCAGGAATGT 1308
Query 1350 ATCTGGGCGACATTGTCCGCAGAGTAATTCTTCGAATGTCACAAGAGTCTGACATCTTTG 1409
||||||| |||||||| || ||||||||||| || |||||| |||| ||||| |||||||
Sbjct 1309 ATCTGGGTGACATTGTTCGTAGAGTAATTCTCCGCATGTCAGAAGATTCTGATATCTTTG 1368
Query 1410 GACCCATCTCATCCATTTTATCT-ACGCCTTTTGTTCTGAGAACAAATTCTGTCTCAGCA 1468
|||||||||| || | |||||| | ||||| ||||| ||||||||||| ||||||||
Sbjct 1369 GACCCATCTCGCCCGTGTTATCTGA-GCCTTACGTTCTAAGAACAAATTCAGTCTCAGCC 1427
Query 1469 ATGCATGAAGATGACACATCTGAGTTACAAGAAGTAGCAAGAATTTTGAAAGATTTAGGG 1528
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct 1428 ATACATGAAGATGACACACCTGAGTTACAAGAAGTAGCAAGAATCTTGAAAGACATAGGG 1487
Query 1529 GTGTCAGAGGTACCATTGAAGGTGAGGAAACTTGTAGTGAAGATATGCGATGTAGTGACA 1588
|| ||||| |||||| |||||||||| ||||| || ||||| ||||||||||| || |||
Sbjct 1488 GTATCAGATGTACCACTGAAGGTGAGAAAACTAGTGGTGAAAATATGCGATGTGGTTACA 1547
Query 1589 CGCAGAGCAGCTAGGCTAGCAGCAGCAGGAATTGCAGGAATCTTGAAGAAGGTAGGGAGA 1648
|| ||||||| ||||| |||||||||||||| |||||||||||||||||| |||| ||
Sbjct 1548 CGAAGAGCAGGGAGGCTTGCAGCAGCAGGAATAGCAGGAATCTTGAAGAAGATAGGCCGA 1607
Query 1649 GATGGGAGTGGAGGAGG-A--AG-G--AGAAGCGATAAGC-AAAT--AA-TG-AGAA--G 1695
||||| || || ||| | || | |||||| | ||| |||| || || |||| |
Sbjct 1608 GATGGAAGCGGGGGAATCACGAGCGGGAGAAGC-AGAAGTGAAATCCAAATGCAGAAAAG 1666
Query 1696 AACAGTGGTGGCAGTAGAAGGAGGTCTGTATTTGAACTACAGGATGTTCAGAGAATATAT 1755
|||||| || || |||||||||||| |||| |||| |||| ||||| || ||||| ||
Sbjct 1667 AACAGTTGTTGCGGTAGAAGGAGGTTTGTACATGAATTACACCATGTTTAGGGAATACAT 1726
Query 1756 GGACGAAGCTCT-G-AGAGATATACTGGGAGAAGATGTG-GCTCAACATGTAGTCGTTAA 1812
||| |||||||| | ||||||| || |||||||| ||| | |||| | || || |||||
Sbjct 1727 GGAAGAAGCTCTCGTAGAGATA--CTAGGAGAAGAAGTGAG-TCAATACGTGGTGGTTAA 1783
Query 1813 GGCCATGGAAGATGGTTCCAGCATTGGCTCTGC 1845
||||||||||||||||| ||||||||||||||
Sbjct 1784 AGCCATGGAAGATGGTTCTAGCATTGGCTCTGC 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97589859480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5