BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479536
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20155.1 | Symbols: | unknown protein; Has 36 Blast hits to... 1022 0.0
> AT3G20155.1 | Symbols: | unknown protein; Has 36 Blast hits
to 36 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:7037135-7038375 FORWARD LENGTH=882
Length=882
Score = 1022 bits (553), Expect = 0.0
Identities = 696/763 (91%), Gaps = 17/763 (2%)
Strand=Plus/Plus
Query 24 AAGCTGTTCCAACGTATCATCTAAGTTGTGCTTTTAGGG-AAAACAAGAAT----ACAGC 78
||| ||||||| || ||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 40 AAGTTGTTCCATTGTGTCATCGAAGTTGTGCTTTTAGGGAAAAACAAGAATACAGACAGC 99
Query 79 TCTGGATACCAAGAACAATGAAGGGTCCTCCAGTGACATGTGTGTTTGGTGTGAATATTG 138
||| || |||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 100 TCTAGAAACCAAGAACAATGAAGGGTCCTTCAGTGACATGTGTGTTTGGTGTGAACATTG 159
Query 139 GACTCAAGGGTTATCAAAAGATGTTGAATAAAATATATGAGGGCATTGAAGGTTTAAAGC 198
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 160 GACTCAAAGGTTATCAAAAGATGTTGAATAAAATATATGAAGGCATTGAAGGTTTAAAGC 219
Query 199 TCGATGTGTCAAACTGGTTGGTGTATTTACGGGGCGAAATTGATCCTATAATCTTCATCA 258
||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |
Sbjct 220 TCGATGTGTCAAACTGGTTGGTGTATTTACGGGGCGAGATTGATCCAATAACCTTCATTA 279
Query 259 AGAAGCTGTATAAAGCGAGAAGTTACATTGAGCTCTTCCGAATAGATTATGGATATGAAG 318
|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 280 GGAAGATGTATAAAGCAAGAAGTTACGTTGAGCTCTTCCGAATAGATTATGGATATGAAG 339
Query 319 AGAATCCAGAAGGAACCCGGAGACCAAGTTCTCACTTCATGAGATGTTGCTTTGAACTAA 378
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 340 AAAATCCACAAGGAACCCGGAGACCAAATTCTCACTTCATGAGATGTTGCTTTGAACTAA 399
Query 379 ACACATCAGATATAAGTTGGTATAAGAGAATCATAGGAGCTTTGAAGACCATCCAAGGTG 438
|||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 400 ACACATTAGATATAAGTTGGTATAAGAGAATCATAGGAGCCTTGAAAACCATCCAAGGTG 459
Query 439 TATCATTTACCATAGATGCACAACCAGTTATGGGATATCCGATGGCATATGTATGTGGAA 498
||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||| |
Sbjct 460 TATCATTTACCATAGATGCACAACCGGTTATGGGAAATCCGATGGTATATTTATGTGGGA 519
Query 499 ATATAGAAATTGGAGTGCTCATGAGGATGCTTGTGAAGACAGGCATTGAACTATCAGCAA 558
| |||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 520 ACATAGAAATTGGAGTGCTCATGAAGATGCTTGTGAAGACAGGCATTGAATTGTCAGCAA 579
Query 559 TGGAATATGGAGTCGAGTATAAAGATGCAAACTTGAACCCACCTCCTCCCAAGAAACCTG 618
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 580 TGGAATATGGAGTCGAGTATAAAGATGCAAACTTGAACCCACCTCCTCCCAAGAAAGTTG 639
Query 619 AGGCTCCTTCAAATGTAAC---TGAGACACAGCCCGTGAAAGACACGGTGCCTCCTCCTC 675
|||||||||||| || ||| ||||||| || ||||||||||||||||||||||||||
Sbjct 640 AGGCTCCTTCAATTGGAACAGCTGAGACAAAGGACGTGAAAGACACGGTGCCTCCTCCTC 699
Query 676 TTGAAGTTGTTAGTACATTAGCGAAACACCAAGTCATATACAAGAAGCCTCGCGGTTTTA 735
|| | ||| || | | || ||||||||| ||||||||||| |||||||||| |
Sbjct 700 TTCCTGAGGTT-GT---T-A---AA-CACCAAGTCGTATACAAGAAGTCTCGCGGTTTAA 750
Query 736 GAAGGTTCTGTTGTTAATGAATCATGTCGTCATTAGCACCATA 778
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 751 GAAGGTTCTTTTGTTAATGAATCATGTCGTCATTAGCACCATA 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5