BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg479538

Length=355
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20180.1 | Symbols:  | Copper transport protein family | chr...   590    4e-168


> AT3G20180.1 | Symbols:  | Copper transport protein family | chr3:7043385-7043841 
REVERSE LENGTH=357
Length=357

 Score =  590 bits (319),  Expect = 4e-168
 Identities = 343/355 (97%), Gaps = 0/355 (0%)
 Strand=Plus/Plus

Query  1    ATGCGTATCAAATTGTCAGTGAACAGTGAAAAATGCAGGAAGAAGGCAATGCAAGTGGCA  60
            |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGCGTATCAAACTGTCAGTGAATAGTGAAAAATGCAGGAAGAAGGCAATGCAAGTAGCA  60

Query  61   GTTGTTGCAAATGGTGTAACTTCAGTGGCGATGGAAGGGGAATTTCAGGATGAGCTTGTG  120
            |||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  61   GTTGCTGCAGATGGTGTAACTTCAGTGGCCATGGAAGGAGAATTTCAGGATGAGCTTGTG  120

Query  121  GTTGTTGGAGATGGAGTGGATGCAGCGTCTTTGATTATGGCCTTGAGGAAGAAAGCATGT  180
            ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct  121  GTTGTTGGAGATGGAGTGGATTCAGCTTCTTTGATTATGGCCTTAAGGAAGAAAGCATGT  180

Query  181  CATGTCACTCTTGAGACTCTTGAAGAAGTGAAGAAGCCACAGGTCGAAGAGAAGTCTGTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  181  CATGTCACTCTTGAGACTCTTGAAGAAGTGAAGAAGCCACAGGTCGAAGAGAAGTCTATT  240

Query  241  ACACCGCATTGCTGCATAGCTCAATGTCCTGTGGTTAGCAATGAGCAGCCAAGGCCTGAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACACCGCATTGCTGCATAGCTCAATGTCCTGTGGTTAGCAATGAGCAGCCAAGGCCTGAG  300

Query  301  GTTTATAGAATAGTGCATGATTCTTATGGTCCAACTACTGGGTGCTTAGTTATGT  355
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  301  GTTTATAGAATAGTGCATGATTCTTATGGTCCAACCACTGGGTGCTTAGTTATGT  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16638624919


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5