BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479541
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20220.1 | Symbols: | SAUR-like auxin-responsive protein fa... 1022 0.0
AT3G20230.1 | Symbols: | Ribosomal L18p/L5e family protein | c... 158 8e-38
> AT3G20220.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:7054828-7055456 FORWARD LENGTH=629
Length=629
Score = 1022 bits (553), Expect = 0.0
Identities = 592/610 (97%), Gaps = 5/610 (1%)
Strand=Plus/Plus
Query 3 AAAATAAGAAACAAGAACAACTAGGGTTTCG-TTAACCTAGCTTGttttttatttttATG 61
||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| | |
Sbjct 6 AAAATAAGAAACAAGAACAACTAGGGTTT-GATTAACCTAGCTTGTTTTTTA-TTTAAAG 63
Query 62 TTCTATGAAGATAACAACTTTCATCATAAGATCTTTATCATTGTTATCTATGATCTATCA 121
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 64 TTCTATGAAGATAACAACTTTCATCATAAGATCTTTATCGTTGTTATCTATGATCTATCA 123
Query 122 AATGCAAAGTCTTTTGACATTGATAGATATATAAATGATACCTTTTGAACTTTTCTCAAG 181
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 124 AATGCAAAGTCTTTTGACATTGATAGATATATAAATGATTCCTTTTGAACTTTTCTCAAG 183
Query 182 ACACCATTCCGTTTGA-TTTTTTGCTATCTTTCTTTCTATTCAAC-AAAATGATTTCGCT 239
||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 184 ACACCATTCCGCTTGATTTTTTTGATATCTTTCTTTCTATTCAACAAAAATGATTTCGCT 243
Query 240 AAGTTTCATCGTTCGTCTAGCAAACCAGGAGAACAGACGAAACAGAAGGTACGAAACTAA 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 AAGTTTCATCGTGCGTCTAGCAAACCAGGAGAACAGACGAAACAGAAGGTACGAAACTAA 303
Query 300 CATTAAGGATCGTCTTATCTCGGGGGAGTTATCGGACGGTAGCAGACCAGCCAGAGATCA 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CATTAAGGATCGTCTTGTCTCGGGGGAGTTATCGGACGGTAGCAGACCAGCCAGAGATCA 363
Query 360 AAACGATGTCCCGAGAGGGCATCTTGCGGTCTATGTGGGACGCGAAGAGAGGCAAAGGTT 419
||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 364 AAACGGTGTCCCGAGAGGACATCTTGCGGTCTATGTGGGGCGCGAAGAGAGGCAAAGGTT 423
Query 420 TGTGATACCGACCAAGTATCTTCAATATCCTGAATTTAGGACTTTGATGGATGAAGTAGC 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 424 TGTGATACCGACCAAGTATCTTCAATATCCTGAATTTAGGAGTTTGATGGATGAAGTAGC 483
Query 480 GGACGAGTTTGGGTACGATCATGAAGGAGGGATTCATATTCCTTGTGAAGAAAGTGTTTT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGACGAGTTTGGGTACGATCATGAAGGAGGGATTCATATTCCTTGTGAAGAAAGTGTTTT 543
Query 540 TGAAGAGATTTTGATTAGATACATGTCTTGTGACAAGAAGAAATAATTGTACATACAATA 599
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 544 TGAAGAGATTTTGATTAGATACATGTCTTGTGACAAGAAGAAATAAGTGTACATACAATA 603
Query 600 CAAATATATA 609
||||||||||
Sbjct 604 CAAATATATA 613
> AT3G20230.1 | Symbols: | Ribosomal L18p/L5e family protein |
chr3:7055353-7056758 REVERSE LENGTH=929
Length=929
Score = 158 bits (85), Expect = 8e-38
Identities = 87/88 (99%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 522 TTGTGAAGAAAGTGTTTTTGAAGAGATTTTGATTAGATACATGTCTTGTGACAAGAAGAA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TTGTGAAGAAAGTGTTTTTGAAGAGATTTTGATTAGATACATGTCTTGTGACAAGAAGAA 870
Query 582 ATAATTGTACATACAATACAAATATATA 609
|||| |||||||||||||||||||||||
Sbjct 869 ATAAGTGTACATACAATACAAATATATA 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5