BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479543
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20240.1 | Symbols: | Mitochondrial substrate carrier famil... 2093 0.0
> AT3G20240.1 | Symbols: | Mitochondrial substrate carrier family
protein | chr3:7057011-7058891 FORWARD LENGTH=1403
Length=1403
Score = 2093 bits (1133), Expect = 0.0
Identities = 1310/1389 (94%), Gaps = 37/1389 (3%)
Strand=Plus/Plus
Query 1 TAAATTATTAGTTTATACTCTTCTAGG----TCTGTTCACAATC---------TTTGttt 47
||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1 TAAATTATTAGTTTATACTCTTCTAGGTCTCTCTGTTCACAATCTGATGGAAGTTTGTTT 60
Query 48 tttt-tttGTTTTCTAATTATG-TTTAATTGAATATTCTTTCTTCTCTGTTGCCCTTTTT 105
|||| ||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 61 TTTTCTTTGTTTTCTAATTATGTTTTAATTGAATA-------TTCTCTGTTGCCCTTTTT 113
Query 106 TGAATCTCCTGTTCTG--TCTCTGATAAAATCTTTGAAAGAACAAACGGAGACAGAGAGT 163
|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TGAATCTCTTGTTCTGTCTCTCTGATAAAATCTTTGAAAGAACAAACGGAGACAGAGAGT 173
Query 164 --GAGAAAATGGCAATGGTTGTTCCAAAAGAAGGTCTTGTGGTTATGGACAAGGAATCTC 221
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 174 GAGAGAAAATGGCAATGGTTGTTCCAAAAGAAGGGCTTGTGGTTATGGACAAGGAATCTG 233
Query 222 TTTCTTCAGCTTCATCGGATTCTCATCTTCGTCTCCAACCTCACTTTCCTGACTTCACGA 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 234 TTTCTTCAGCTTCATCGGATTCTCATCTTCGTCTCCAACCTCACTTTCCTGACTTCACTA 293
Query 282 TTCCTGTTAAAGATTTTTTCAAGTCTAGGGAAGCCCGTGAGTTTCTTAGTGGGGCTTTAG 341
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTCCTGTTAAAGATTTCTTCAAGTCTAGGGAAGCCCGTGAGTTTCTTAGTGGGGCTTTAG 353
Query 342 CTGGAGCTATGACCAAAGCTGTTCTTGCTCCACTTGAAACTATAAGGACAAGAATGATTG 401
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 354 CTGGAGCTATGACCAAAGCTGTTCTTGCTCCACTTGAGACTATAAGGACAAGAATGATTG 413
Query 402 TTGGTGTTGGATCGAGAAGCATTCCAGGTAGTTTTCTGGAAGTTGTACAGAAGCAAGGGT 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 TTGGTGTTGGATCGAGAAGCATTCCAGGTAGTTTTCTGGAAGTTGTACAGAAGCAAGGGT 473
Query 462 GGCAAGGTCTTTGGGCTGGCAACGAAATCAATATGATTCGAATCATTCCAACTCAAGCAA 521
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 474 GGCAAGGTCTTTGGGCTGGCAATGAAATCAATATGATTCGAATCATTCCAACGCAAGCAA 533
Query 522 TTGAGTTAGGGACATTTGAATGGGTAAAACGCGCAATGACATCAGCTCAAGTGAAGTTGA 581
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 534 TTGAGTTAGGGACATTCGAGTGGGTAAAACGTGCAATGACATCAGCTCAAGTGAAGTTGA 593
Query 582 AGAAGATTGAAGATGCCAAGATTGAAATCGGTGATTTTAGTTTCAGTCCCTCCATATCAT 641
|||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 594 AGAAGATTGAGGACGCCAAGATTGAAATCGGTGATTTTAGTTTCAGTCCGTCCATATCGT 653
Query 642 GGATCTCTCCTGTTGCTGTGGCTGGTGCATCTGCAGGTATTGCTAGTACGCTTGTTTGCC 701
|||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 654 GGATCTCTCCTGTTGCTGTGGCTGGTGCATCTGCTGGTATTGCCAGTACACTTGTTTGCC 713
Query 702 ATCCTCTCGAAGTCCTCAAGGATAGATTGACTGTGAGCCCTGATATTTATCCAAGCTTAA 761
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 714 ATCCTCTCGAAGTCCTCAAGGATAGATTGACTGTGAGCCCTGAGATTTATCCAAGCTTAA 773
Query 762 GCCTTGCAATTCCAAGGATTTTCAGAGACGATGGAATCCGTGGATTTTACGCTGGCTTAG 821
|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 774 GCCTTGCAATTCCAAGAATTTTTAGAGCCGATGGAATCCGTGGATTTTACGCTGGCTTAG 833
Query 822 GACCAACACTGGTCGGGATGCTTCCATACAGCACATGTTATTACTTCATGTATGACAAAA 881
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 834 GACCAACATTGGTCGGGATGCTTCCTTACAGCACATGTTATTACTTCATGTATGACAAAA 893
Query 882 TGAAGACCTCATACTGCAGATCCAAGAACAAAAAGGCTTTAAGCCGTCCAGAGATGCTTG 941
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TGAAGACCTCATACTGCAAATCCAAGAACAAAAAGGCTTTAAGCCGTCCAGAGATGCTTG 953
Query 942 TTCTTGGAGCTTTAGCTGGTCTAACGGCGAGTACCATAAGCTTTCCGTTGGAAGTCGCGC 1001
||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||
Sbjct 954 TTCTTGGAGCTTTAGCTGGTCTAACGGCGAGCACCATAAGCTTCCCCTTGGAAGTAGCGC 1013
Query 1002 GAAAGCGGTTGATGGTTGGAGCTCTGAAGGG-GCAATGCCCACCGAACATGGCTGCAGCA 1060
| ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||
Sbjct 1014 GGAAGCGGTTGATGGTTGGAGCTCTGAAGGGAG-AATGCCCACCAAACATGGCTGCAGCA 1072
Query 1061 ATAGCAGAAGTAGTGAAGAAAGAAGGAGTGATGGGACTCTACAGAGGATGGGGAGCAAGT 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 ATAGCAGAAGTAGTGAAGAAAGAAGGAGTGATGGGACTCTACAGAGGATGGGGAGCAAGT 1132
Query 1121 TGTTTGAAAGTCATGCCGTCTTCAGGCATCACTTGGGTCTTCTATGAAGCCTGGAAAGAT 1180
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1133 TGTTTGAAAGTCATGCCATCTTCAGGCATTACTTGGGTCTTCTATGAAGCCTGGAAAGAT 1192
Query 1181 ATCTTGCTTGCCGCCAACACCAAACCACTCATATAATGACGAAATTGTAACCTAAGTTAT 1240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATTTTGCTTGCCGCCAACACCAAACCACTCATATAATGACGAAATTGTAACCTAAGTTAT 1252
Query 1241 CATTGTTACTT-AAAGCTAA-GCCTCTCATCACATTTCAAAGTTATGATTTAGGGAATGT 1298
|||||| ||| |||||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 1253 TATTGTTTCTTTAAAGCTAAAGCCTGTCATCACATTTCTAAGTTATGATTTAGGGAATGT 1312
Query 1299 GGTGGCTTGGTTTTTCCCCATGAGATGtttttttGGCACTTGGGAGTGTTTTGGTTCCCA 1358
|||||||||| | |||||||||||||||||||| |||||||||| || ||||||
Sbjct 1313 GGTGGCTTGGA----C---ATGAGATGTTTTTTTGGCACCTGGGAGTGTTATGATTCCCA 1365
Query 1359 TGAGAAGTA 1367
|||||||||
Sbjct 1366 TGAGAAGTA 1374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67318930845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5