BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479545
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20260.1 | Symbols: | Protein of unknown function (DUF1666)... 2678 0.0
> AT3G20260.1 | Symbols: | Protein of unknown function (DUF1666)
| chr3:7064054-7066503 REVERSE LENGTH=2202
Length=2202
Score = 2678 bits (1450), Expect = 0.0
Identities = 1934/2144 (90%), Gaps = 127/2144 (6%)
Strand=Plus/Plus
Query 41 tttttttttGGAATTTGAAATCACAAAGTTTAATTACTGAATTTAATGACATCTGTTT-A 99
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 68 TTTTTTTTTGGAATTTGAAATCACAAAGTTTAATTATTGAATTTAATGACATCTGTTTAA 127
Query 100 GATATCAATAATA------------------CTCACATTTATATTGTGCTCTCTCTGTCC 141
|| |||||||||| |||||||||||||||||||||||||||||
Sbjct 128 GA-ATCAATAATACTTGCTCTCCTTTCCTCTCTCACATTTATATTGTGCTCTCTCTGTCC 186
Query 142 ATATACTG-AAAAACTTGAA-T-AGAGAGTA-AAGACATT--ATTAtctctctctctctT 195
|| ||||| ||||||||||| | ||| | || | || || || ||||||||||||||
Sbjct 187 ATTTACTGAAAAAACTTGAATTGAGACATTATTATACTTTGCTTTCTCTCTCTCTCTCTT 246
Query 196 GCAAGTTGTTAGAAACATTTCTCCTTCTTTAATCTCCTCCTCCTCCtgtctttgtctttc 255
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GCAAGTGGTTAGAAACATTTCTCCTTCTTTAATCTCCTCCTCCTCCTGTCTTTGTCTTTC 306
Query 256 gattttgttttgcttttatttatgggtttgtctttctttcttaaattttgaatctttttc 315
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 307 GATTTTGTTTTGCTTTTA-TT-TGGGTTTCTCTTTCTTTCTTAAATTTTGAATCTTTTTC 364
Query 316 tttctttttg---------------t-ttt--t---t-t-GTACTAGTTTCAGTGGAGTG 352
|||||||||| | ||| | | | ||| ||||||||||||||||
Sbjct 365 TTTCTTTTTGTTTTTTTTCTCACACTCTTTGCTCAGTGTAGTAGTAGTTTCAGTGGAGTG 424
Query 353 TTGATTTACCAGGTAATGCTAGTG--------A--T-----TTA-TGAATCGTATCTGAA 396
|||||||| |||| |||||||||| | | ||| ||||||| |||| ||
Sbjct 425 TTGATTTATCAGGGAATGCTAGTGTTCTTATCAGCTAGAGATTAGTGAATCGAATCTAAA 484
Query 397 CTTTCACACAAATGCTCTTGTTCCTACTGATCTTGTGATTTATGCATT-TTCCATCTTCT 455
||||| ||||||||| ||||| ||||||||| | | ||||||||| || |||||||
Sbjct 485 GTTTCAGACAAATGCTGTTGTTGCTACTGATC---T-ACTTATGCATTCTT-AATCTTCT 539
Query 456 GTCGGTTGCT-CTGATTCTCTAGGGTTTGGTCATGATTCTCTGAGATCCTACTAGATTCA 514
||||| || | || ||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 540 GTCGG-TGTTCCTAATTCTCTAGGGTTTGCTCATGATTCTCTGAGATCTTACTAGATTCA 598
Query 515 TGCATTTTACACATTCTGTGGTTTAGTTGCTACTTTGATTAAGTCCG-T-T----G--G- 565
|||||||| | |||||| |||||| |||| | |||||||||||| || | | | |
Sbjct 599 TGCATTTTCCTCATTCTCTGGTTTGGTTGATTCTTTGATTAAGTTCGTTGTGGCAGAAGA 658
Query 566 G----G--------CA-G--AAGAGA-AAGTCTCAATTTAGATCTTAAGATTTAACAAAA 609
| | || | |||||| ||||||| ||||||||||| ||||||||||||
Sbjct 659 GAAACGCTTTTACTCATGCAAAGAGACTAGTCTCAGTTTAGATCTTATGATTTAACAAAA 718
Query 610 GAGACACT-ACTCTTCC-AAGTGTGTTTGAGGAGGCAATGGATTTCTTGAGAGTTAGAAA 667
| ||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 719 -A-ACACTCACTC-TCCTAAGTGTGTTTGAGGAGGCAATGGATTTCTTGAAAGTTAGAAA 775
Query 668 ATTTCGCAAGTCACGGAAGCCAAACCTTGAAAAGGAGAAAGAAGACAAGATTTTGGCTCA 727
|||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 776 ATTTCGAAAGTCTCGGAAGCCAAACCTTGAAAAGGAGAAAGAAGACAAGATATTGGCTCA 835
Query 728 GCAAGAGCAGGCAAGGAGTGATAACACTGAAGCTGGTGTGATAGATTCGGCTAAAACAGA 787
|||||| |||||||||||||| |||||||||||||||||||||||||||| ||| |||
Sbjct 836 GCAAGAACAGGCAAGGAGTGAGAACACTGAAGCTGGTGTGATAGATTCGGGGAAAGGAGA 895
Query 788 CGAGATCGAAGATGACGATGATGATTTCATTACCAATGAGGTTAAGAGAAGGCTCAAGGA 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TGAGATCGAAGATGACGATGATGATTTCATTACCAATGAGGTTAAGAGAAGGCTCAAGGA 955
Query 848 GTTGAGGAGAAACAGTTTCATGGTGTTGATACCTGAGgaagaagaagaagaagaagaaga 907
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 956 GTTGAGGAGAAACAGTTTCATGGTGTTGATACCTGA-G--GAAGAAGAAGAAGAAGAAGA 1012
Query 908 GGAATCTTATCTAGACGAAGATGATGATGACGGAGAAGACAAGTGTTCAAGTGAGTGGAG 967
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGAATCGTATCTAGATGAAGATGATGATGACGGAGAAGACAAGTGTTCAAGTGAGTGGAG 1072
Query 968 AGATGTGGTCGCTGAAGGACTTCAATGGTGGGGAGGTTTTGATGCTGTCTATGAAAAGTA 1027
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGATGTGGTTGCTGAAGGACTTCAATGGTGGGGAGGTTTTGATGCTGTCTATGAAAAGTA 1132
Query 1028 TTGTGAGCGTATGCTCTTCTTTGATCGTTTAAGCTCTCAGCAACTCAAGGAAACTGGCAT 1087
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1133 TTGCGAGCGTATGCTCTTCTTTGATCGTTTAAGCTCTCAGCAGCTCAAGGAAACTGGCAT 1192
Query 1088 TGGAATTGCTCCAAGTCCTTCAACTCCATCGCCAAGATCTGCATCTAAGAAGCTGTCATC 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGGAATTGCTCCAAGTCCTTCAACTCCATCGCCAAGATCTGCATCTAAGAAGCTGTCATC 1252
Query 1148 GCCTTTTCGATGTCTTTCTCTCAAGAAGTTGGATGTTCCCGAGGAAGATATCGAGCATTT 1207
|||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 1253 GCCTTTCCGATGTCTTTCTCTCAAAAAGTTTGATGTTCCGGAGGAAGATATCGAGCATTT 1312
Query 1208 GCAGCCGACAGAAATT---GACCCTTACCAAGATCTAGAGACGGCTTATGTTGCTCAACT 1264
||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1313 GCAGCCGACAGAAGTTGACGACCCTTATCAAGATCTAGAGACGGCCTATGTTGCTCAACT 1372
Query 1265 CTGCCTCACTTGGGAGGCACTTCACTGTCAATACACGCAGCTGAGCCACTTAATCTCATG 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CTGCCTCACTTGGGAGGCACTTCACTGTCAATACACGCAGCTGAGCCACTTAATCTCATG 1432
Query 1325 CCAACCCGAAACTCCGACTTGCTACAACCATACTGCCCAACTGTTTCAGCAATTCTTAGT 1384
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1433 CCAACCCGAAACCCCGACTTGCTACAACCATACTGCCCAACTGTTTCAGCAATTCCTAGT 1492
Query 1385 CTTGTTGCAGAGGTATATAGAGAATGAACCATTTGAGCAGGGCTCAAGATCTGAACTTTA 1444
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1493 CTTGTTGCAGAGGTATATAGAGAATGAACCGTTTGAGCAAGGCTCAAGATCGGAACTTTA 1552
Query 1445 TGCACGTGCTAGAAATGCAATGCCTAAGCTACTTCAAGCTCCTAAGATTCAAGGGTCAGA 1504
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 TGCTCGTGCTAGAAATGCAATGCCTAAGCTACTTCAAGCTCCTAAGATTCAAGGGTCAGA 1612
Query 1505 TAAAAAGGAGATGGAGAAAGATACAGGCTTCATGGTCCTCGCTGATGATCTCATCCAAA- 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1613 TAAAAAGGAGATGGAGAAAGATACAGGCTTCATGGTCCTCGCTGATGATCTCATC-AAAG 1671
Query 1564 TCATCGAGAGCTCGATCCTTACTTTCAACGTTTTCTTGAAAATGGATAAGAAGAAACCAA 1623
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1672 TCATAGAGAGCTCGATCCTTACTTTCAACGTCTTCTTGAAAATGGATAAGAAGAAACCAA 1731
Query 1624 ATGGGGGTATTCACTTGTTTGGGAACCACAACAACAACCATTTAAATTCTATAACTCCTT 1683
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1732 ATGGGGGTATTCACTTGTTTGGGAACCACAACAACAACCATGTGAATTCTACAACTCCTT 1791
Query 1684 TACTACTGGTTCAGTCATCCATTGATAAGAAGAGAGTGAAAGCGAAGGAGCTTTCAAAGA 1743
||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct 1792 TACTACTGGTTCAGTCATCCATTGATAAGAAAAGGGTGAAAGCAAAGGAGCTTTCAAAGA 1851
Query 1744 AGACAAAAGGATTGAGAAAGAAATCATGGCCTCAAACATGGGAAGGTGTTCAACTCTTGT 1803
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 AGACAAAAGGGCTGAGAAAGAAATCATGGCCTCAAACATGGGAAGGTGTTCAACTCTTGT 1911
Query 1804 TTGCAGCCATTGACATCAAACTCGCAACACGGGTATTGAGGATGGCGAAAATCAGTAAAG 1863
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 1912 TTGCAGCCATTGACATCAAACTCGCAACACGGGTTTTGAGGATGTCGAAAATCAGTAAAG 1971
Query 1864 AGCAACTTCTATGGTGTGAAGAAAAGATGAAAAAGCTCAACTTTTCAGCTGGGAAGCTTC 1923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1972 AGCAACTTCTATGGTGTGAAGAAAAGATGAAAAAGCTCAACTTTTCAGCTGGGAAGCTTC 2031
Query 1924 AAAGACACCCATCTCCAATTCTTTTCCCATGTTGATA-AA------------CACACAAT 1970
|||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 2032 AAAGACACCCATCTCCAATTCTTTTCCCTTGTTGATATAATAAAGTGATGAACACACAAT 2091
Query 1971 GATTTCAAATTCAGTCGCATCAACTGTTCCCTTTTTATCCGATCATTAAGATTCCGGTTT 2030
|||||||||| | || |||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 2092 GATTTCAAATACTGTAGCATCAACTGTTCCCTTTTTATACGATCTTTAAGAT-CCGGTTT 2150
Query 2031 GGGGATTTTTCTTTTGCAGACAAATCAAAGAAGAAATTGTGTGT 2074
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 GGGGATTTTTCTTTTGCAGACAAATCAAAGAAGAAATTGTGTGT 2194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102810716160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5