BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg479547
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20270.1 | Symbols: | lipid-binding serum glycoprotein fami... 2436 0.0
> AT3G20270.1 | Symbols: | lipid-binding serum glycoprotein family
protein | chr3:7067059-7070946 FORWARD LENGTH=2314
Length=2314
Score = 2436 bits (1319), Expect = 0.0
Identities = 1590/1715 (93%), Gaps = 42/1715 (2%)
Strand=Plus/Plus
Query 464 GGCTTTCTTCCATATCCATATTCAAGACCGATCAAAATCCAGTGGAAGGTGTTTGAGAAA 523
||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||||||
Sbjct 615 GGCTTTCTTCCATATCCATATTCAAGACCAATCAAAGTGCAGTGGAAGGTGTTCGAGAAA 674
Query 524 CTGTTTGTGGATTTCCGCGACTTGCTTGATCATTCAGAGTATTGCGACCTAATAGGAATT 583
|||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||
Sbjct 675 CTGTTTGTAGATTTCCGTGACTTGCTTGATCATTCAGAGTACTGCGACTTAATAGGAATT 734
Query 584 GCCAAGAAGAAGTTTCAAACAATACCTTATGTTTGTTTTAAAGCAAAAGTCAAACTTCTG 643
||||| || ||||||||||| |||||||| ||| | ||| | ||
Sbjct 735 GCCAAAAATAAGTTTCAAACCATACCTTA-------TTT----C---AGT--TA--TC-- 774
Query 644 TTATCCACTTTATTCTTCTTCTTCTTGGAAATGGGTCTCATGAAAGTAATGACGATTCTG 703
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 775 -CATCCACTTTA---TTCTTCTTCTTGGAAATGGCTCTCATGAAAGTAATGACGATTCTG 830
Query 704 GTTCTCTTCGTCTCGGTGTCATCGACCTTGGCGCAATCCAACAATGGCGGTCACATTTCG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GTTCTCTTCGTCTCGGTGTCATCGACCTTGGCGCAATCCAACAATGGCGGTCACATTTCG 890
Query 764 ATACTCGTCTCGGAAATGGGTCTTGACTTTGCGAAAGATTACCTTATCAAGAAAGTGATC 823
||| |||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 891 ATAATCGTCTCGGAAACAGGTCTTGAATTTGCTAAAGATTACCTCATCAAGAAAGTGATC 950
Query 824 ACTGTGACGCTTCCGCTTCAGCTACCAGACATTGAGAATAAGGTTAAGATCCCTTTAATC 883
||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 951 ACTACGACGCTTCCACTTCAGCTACCAGACATTGAGAATAAGGTTAAGATCCCTCTAATC 1010
Query 884 GGGAAAGTTCGAATGGGTCTATCGAATATTCAGATTGATGCAGTTCATGTCCAGTCTTCG 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GGGAAAGTTCGAATGGGTCTATCGAATATTCAGATTGATGCAGTTCATGTCCAGTCTTCG 1070
Query 944 AAGATCGAGACGAGAAAAGATGGAATTGTTTTGAGTGTTTTAGGTGCTACAGCAAATTTT 1003
||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1071 AAGATGGAGACTCGAAAAGATGGAATCATTTTGAGTGTTTTAGGTGCTACAGCAAATTTG 1130
Query 1004 AGCATGGACTGGTCTTATACTTATAGAGCTTCCTTCTTTGAGATTTCTGATCATGGAGAT 1063
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGTATGGACTGGTCTTATACTTACAGAGCTTCCTTCTTTGAGATTTCTGATCATGGAGAT 1190
Query 1064 GCTTCTGTCGAGGTAAAAGGAATGGATGTGAGAATCACTGCCACTTTGGTTAATGATAAT 1123
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1191 GCTTCTGTTGAGGTTAAAGGAATGAATGTGAGAATCACTGCCACTTTGGTTAATGATAAT 1250
Query 1124 GGAAGTCTAAAGATTGTCTCACGGGAAAATGATTGTACAGTGGAGAACATTGATATTCAT 1183
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1251 GGAAGTCTAAAGATTGCCTCACGGGAAAATGATTGTACAGTAAAGAACATTGATATTCAT 1310
Query 1184 ATCAATGGTGGTGCTTCTTGGCTATATCAAGGGGTGGTTGATGCATTTCAAAAGATGATT 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1311 ATCAATGGTGGTGCTTCTTGGCTATATCAAGGGGTGGTTGATGCATTTCAAAAAATGATT 1370
Query 1244 ATATCTACTGTTGAAAAGACTGTCTCTACTAAAATTGTAGAAAATATGAAGAAGCTCGAT 1303
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1371 ATATCTACTGTTGAAAAAACTGTCTCTACTAAAATTGTAGAAAAAATGAAGAAGCTTGAT 1430
Query 1304 TCTTTCTTGCAATCACTTCCAAAACAGAGAAATATTGATGACTCTGCTGCAGTGAATCTT 1363
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1431 TCTTTCTTGCAATCACTTCCAAAACAGAGAAAGATTGATGACTCTGCTGCAGTGAATCTC 1490
Query 1364 ACTTTTACAGGCAACCCTGTCTTAGGGAATTCGTCGGTTGAAGTTGACATTAATGGTTTA 1423
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1491 ACTTTTACAGGCAACCCTGTCTTAGGGAATTCGTCGGTTGAAGTTGACATCAATGGTTTA 1550
Query 1424 TTCTTGCCAAAGGGTAATGATGTTAAAGTTTCAGGATCTCGTTCTTCTTCCGTCTTTGGT 1483
||| ||||||||||| ||||| |||||||| |||| ||||||||||||||| ||||||||
Sbjct 1551 TTCATGCCAAAGGGTGATGATATTAAAGTTGCAGGGTCTCGTTCTTCTTCCTTCTTTGGT 1610
Query 1484 GGGG-T-A-AAGAGAATGGTGACAATTTCAGTAGAAGAAGAAGTTTTTAACTCTGCAACA 1540
|||| | | ||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1611 GGGGTTAATAAGAGAATGGTGACAATTTCAGTAGAAGAAGGAGTTTTCAACTCTGCAACA 1670
Query 1541 CTTGTCTACTTCAGTGCTCAGGTGATGCATTTAGTTATCGG-GGAAACAAAGAACGGATC 1599
||||||||||||| ||| ||||||||||||||||||| || ||||||||||||||| ||
Sbjct 1671 CTTGTCTACTTCAACGCTAAGGTGATGCATTTAGTTAT-GGAGGAAACAAAGAACGGGTC 1729
Query 1600 GATTCTAAGCACATCTGACTGGAAACTCATCCTTCCAGAGCTGTACAAACATTATCCAGA 1659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 CATTCTAAGCACATCTGACTGGAAACTCATCCTTCCAGAGCTGTACAAACATTATCCAGA 1789
Query 1660 TAATAAAATGGTGCTTAACATGTCAGTAACATCTCCTCCTGCTGTTAAGATCACAGAGAA 1719
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1790 TAATAAAATGGTGCTTAACATGTCAGTAACATCTCCTCCTGCTGTTAAAATCACAGAGAA 1849
Query 1720 TGGAATTGATGCGACGATTCAGCTAGAGATAGCAATCGATGTTCAAGACTCCGGAGAAGT 1779
||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||
Sbjct 1850 TGGAATTGATGCGACGATTCAGCTAGATATAGCGTTCGATGTTCAAGACTCTGGAGAAAA 1909
Query 1780 TCTATCTGTAGCACGCCTATCAACAGTTTTGAATGTTGCATGTTCTGA-AGAAATAACAA 1838
||||||||||||||||||||||||| || ||| |||||| |||||| | |||||| ||
Sbjct 1910 TCTATCTGTAGCACGCCTATCAACAATTCTGAGTGTTGCGTGTTCT-ACAGAAATCGTAA 1968
Query 1839 AGAACAATCTAACCGGAAGCCTCAGATTAAATGATTTCAATGCAACAATGAAGATG-AGT 1897
|||| ||||||| ||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 1969 AGAATAATCTAATCGGTAGCCTCAGATTAAATGATTTCAATGCAACAATGAAG-TGGAGT 2027
Query 1898 AAAATTGGAGAGTTTCAATCAAACTATGTTCAGGCTGCTACATCTAGGATTCTTGAAGCC 1957
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 2028 AAAATTGGAGAGTTTCAAACAAACTATGTTCAGGCTGCTACGTCTAGGATTCTTGAAGCC 2087
Query 1958 TTGTTTTTGCCGTACGTAAACACACGCCTCAGGAGAGGATTCCCTTTGCCGATTCCCGGC 2017
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 2088 TTGTTTTTGCCGTACGTAAACACACGTCTCAAGAGAGGATTCCCTTTGCCGATTCCCGGC 2147
Query 2018 GATTTCACGAT-AAATAACATAAAGATTGTTTATGTTAGA-AGTGGCATTTTGGTATGTA 2075
||||||||||| ||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 2148 GATTTCACGATCAAA-AACATAAAGATTGTTTATGTTA-ATAGTGGCATTTTGGTATGTA 2205
Query 2076 CCGATATCGGCACTAGCACAAACCATTAAGC---TATTATATAACTTCTT-GCATTGCAT 2131
||||||||||||||||||||||||| ||||| ||||||||| |||||| | |||||||
Sbjct 2206 CCGATATCGGCACTAGCACAAACCAGTAAGCAAGTATTATATAGCTTCTTAG-ATTGCAT 2264
Query 2132 GTACGTAAGCCGGAAGAAAAATAATGACAACCATA 2166
||||||||||| ||||||| |||||||||||||||
Sbjct 2265 GTACGTAAGCCTGAAGAAATATAATGACAACCATA 2299
Score = 494 bits (267), Expect = 2e-138
Identities = 315/338 (93%), Gaps = 3/338 (1%)
Strand=Plus/Plus
Query 104 TGGGCAAATTTATTCCGTGGAGAATGCTTATGGCTGGCTGCTCTTAATCGGGTGTATCCT 163
||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 210 TGGGCTAATTTATTCCGCGGAGAATGCTTATGGCTGGCTGCTCTTAATCGGGCGTATCCA 269
Query 164 CTTGCTAGCAAAACCAAGTGCTGGACTGGACCAATCCGTCAAGGATTAAGCAAACGGAGA 223
|||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||
Sbjct 270 CTTGCTAGCAAAACTAAGAGCTGGATTGGACCAATTCGTCAAGGATTAAGCAAACGGAGA 329
Query 224 TATGTGGCTTTATACATCAGCAGAAACATATTAGCTGTGGAT-A--CAGACATAGATGAG 280
|||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 330 TATGTGGCTTTATACATCAGCAGAAACATATTAGGTGTGGATGATACAGACATAGATGAG 389
Query 281 ATGCTTGGACATATTTACTTGTTTTTGAAAGATCAGCTTCAACTTTCCACTATGCCTGCT 340
|||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 390 ATGCTTGGACATATTTACGTGTTCTTGAATGATCAGCTTCAACTTTCCACTATGCCTGCT 449
Query 341 TCAGGCGTTTTGCATGGAACCCTGATCGACCAACTGAGTGTTTGTGGCAAATCGAAAGAA 400
|||||| |||||||||||||||| ||||||||| ||| |||||||||| |||||||||||
Sbjct 450 TCAGGCATTTTGCATGGAACCCTTATCGACCAATTGATTGTTTGTGGCCAATCGAAAGAA 509
Query 401 GAAGCTGATGAGCTTGCTACAAAGATCTGGCTGGCTCT 438
||||||| ||||||||| |||||||| |||||||||||
Sbjct 510 GAAGCTGGTGAGCTTGCAACAAAGATTTGGCTGGCTCT 547
Score = 159 bits (86), Expect = 8e-38
Identities = 100/106 (94%), Gaps = 3/106 (3%)
Strand=Plus/Plus
Query 1 GATAGTAATGAACCGAAGT--A-AAGAGAACATTGCGCCGACAATGAAAGATGATAGTCC 57
||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||
Sbjct 59 GATAGTAATGAACCGAAGTAAAGAAGAGAACGTTGCTCCGACAATGAAAGATGATAGTCC 118
Query 58 ATTTGGAAAGCTTACAGAGGATCTCTTGATAGAGATATTTATAAGA 103
|||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 119 ATTTGGAAAGCTTACAGAGGATCTCTTGATAGAGATATTTATCAGA 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107429166300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5